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Carg27492 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg27492
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionTrafficking protein particle complex subunit
Genome locationCarg_Chr05:6594616..6597281
RNA-Seq ExpressionCarg27492
SyntenyCarg27492
Gene Ontology termsGO:0006888 - endoplasmic reticulum to Golgi vesicle-mediated transport (biological process)
GO:0005783 - endoplasmic reticulum (cellular component)
GO:0005794 - Golgi apparatus (cellular component)
GO:0030008 - TRAPP complex (cellular component)
InterPro domainsIPR007233 - Trafficking protein particle complex subunit
IPR011012 - Longin-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7029968.1 hypothetical protein SDJN02_08312 [Cucurbita argyrosperma subsp. argyrosperma]1.3e-38100Show/hide
Query:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASFMAFRCMPFPSSFRLFPVVRVLNSLKPTHSTSIASSHLLDVDLVLEK
        MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASFMAFRCMPFPSSFRLFPVVRVLNSLKPTHSTSIASSHLLDVDLVLEK
Subjt:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASFMAFRCMPFPSSFRLFPVVRVLNSLKPTHSTSIASSHLLDVDLVLEK
OUZ99569.1 Sybindin-like protein [Macleaya cordata]3.6e-1770.24Show/hide
Query:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASFMAFRCMPFPSSFRLFPVVRVLNSLKPTHSTSIASSHLLDVDLVLE
        MAAIYSL+IINKSGGLIFYKDYGS+GRMDTNDSLR+AS           S +L PVV  LNSLKPT S SIASSH L V L+LE
Subjt:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASFMAFRCMPFPSSFRLFPVVRVLNSLKPTHSTSIASSHLLDVDLVLE
XP_021619998.1 trafficking protein particle complex subunit 4-like [Manihot esculenta]3.9e-11100Show/hide
Query:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVAS
        MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVAS
Subjt:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVAS
XP_024019104.1 trafficking protein particle complex subunit 4 [Morus notabilis]3.9e-11100Show/hide
Query:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVAS
        MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVAS
Subjt:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVAS
XP_041018648.1 trafficking protein particle complex subunit 4 [Juglans microcarpa x Juglans regia]3.9e-11100Show/hide
Query:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVAS
        MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVAS
Subjt:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVAS
TrEMBL top hitse value%identityAlignment
A0A200PMY2 Trafficking protein particle complex subunit1.7e-1770.24Show/hide
Query:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASFMAFRCMPFPSSFRLFPVVRVLNSLKPTHSTSIASSHLLDVDLVLE
        MAAIYSL+IINKSGGLIFYKDYGS+GRMDTNDSLR+AS           S +L PVV  LNSLKPT S SIASSH L V L+LE
Subjt:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASFMAFRCMPFPSSFRLFPVVRVLNSLKPTHSTSIASSHLLDVDLVLE
A0A6J1DUU4 Trafficking protein particle complex subunit1.9e-11100Show/hide
Query:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVAS
        MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVAS
Subjt:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVAS
A0A6J1G4Q4 Trafficking protein particle complex subunit1.9e-11100Show/hide
Query:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVAS
        MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVAS
Subjt:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVAS
A0A6J1KK16 Trafficking protein particle complex subunit1.9e-11100Show/hide
Query:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVAS
        MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVAS
Subjt:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVAS
A0A7J6ELS8 Trafficking protein particle complex subunit1.9e-11100Show/hide
Query:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVAS
        MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVAS
Subjt:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVAS
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G02280.1 SNARE-like superfamily protein3.4e-1392.11Show/hide
Query:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVAS
        MAAIYSLYIINKSGGLIFYKD G+ GRMDTNDSLRVAS
Subjt:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVAS

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGCAATTTACAGCCTCTACATCATCAACAAATCTGGTGGCTTGATCTTCTACAAGGATTATGGGTCTGCTGGACGAATGGACACAAACGATAGCTTAAGAGTGGC
GAGTTTTATGGCATTTCGATGCATGCCATTTCCCAGCAGCTTTCGCCTATTTCCGGTTGTTCGGGTACTGAACTCCTTGAAGCCGACACATTCGACCTCCATTGCTTCCA
GTCACTTACTGGATGTTGATCTTGTTTTAGAAAAATGA
mRNA sequenceShow/hide mRNA sequence
TTGATTTATAAAATTTATAACAAAAATAGTTTAATATTAATTTTTGGTATCTCCCAAAACTCACCCACTCGCTTTAAGTTCGGCGTTCATTGAAACTGGGTCTGTATTTT
GCGCCCTTGAATCTACGCTCTTCACCACACTCACAATCGCATTCATTCCATTTCTTTCATTAAGACTTCAGAAGTTTCAACCCGGAAAGATCTGAAGAGGATGGCAGCAA
TTTACAGCCTCTACATCATCAACAAATCTGGTGGCTTGATCTTCTACAAGGATTATGGGTCTGCTGGACGAATGGACACAAACGATAGCTTAAGAGTGGCGAGTTTTATG
GCATTTCGATGCATGCCATTTCCCAGCAGCTTTCGCCTATTTCCGGTTGTTCGGGTACTGAACTCCTTGAAGCCGACACATTCGACCTCCATTGCTTCCAGTCACTTACT
GGATGTTGATCTTGTTTTAGAAAAATGAACAAAGTTTTTTGTTGTGTGTGAGCCCGGGACAGTGCACATGGAGGGTCTTCTGAAGTACATTTATGAGTTATACACAGATT
ATGTCTTGAAGAATCCATTCTATGAGATGGAGATGCCTATTCGGTGTGAGCTCTTTGATATCAACCTCGTGCAGGCAGTGCAAAAGGATCGTGTTGCTTTGCTTGGCCGA
TGAACTTTGAATATCCTTCATTTTGCCAGTATTAACCATCCATAATTCAAGACAGGCTCATGACATTGTTGTCCAAATACTTGATAATTTGCCTGCTAAATGTACTCCAT
GTACTCCATGGTCCTTTTCAGTGTTCACCGGATAATCATGGTTCATTTTATAGCCAATTTTTTGTCAATGGTATACAGAACTGAATCCAGGCTTTGAGCTTTTGGGGCAT
GAGTTGCAGCAATGCGCCACCAAATGAACACAAGCACCCAAATAATCAACGTTTTACTTAGATCAGTTTGTAGTTGTTACATGTTTCATGCCAGCCAAATCTTAAATTTT
TCTGCATTGTTATGATATTATTACTGACTCGATGCTGTATATAAAGGGTTAGCTGTAGATCAAGCCTTCTCAACAGATGAAGAGTGTGTCAGGACAATGAACCAATTCTG
CAATTCTCAAGAGCAGCTCTGTTGCTGGATCGTTGCACTATGAACTGATAGGTATTGGAAGCATTTCTATTAAGGTCAGGTTATCTCTTTTCTTTCTCTAGAGATAACAT
ACGTTGAAGAAAGATTTGACTAAGAAAGTT
Protein sequenceShow/hide protein sequence
MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASFMAFRCMPFPSSFRLFPVVRVLNSLKPTHSTSIASSHLLDVDLVLEK