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Carg27530 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg27530
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionRibosome biogenesis protein BRX1-like
Genome locationCarg_Chr10:10133935..10136597
RNA-Seq ExpressionCarg27530
SyntenyCarg27530
Gene Ontology termsGO:0006364 - rRNA processing (biological process)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsIPR026532 - Ribosome biogenesis protein BRX1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6590497.1 Ribosome biogenesis protein BRX1-like 1, partial [Cucurbita argyrosperma subsp. sororia]2.9e-2798.53Show/hide
Query:  MVKKRKHSETLPAVSVKKDDVAPERSKRTLTGWKDKEVATKSESDSDHAVFRNKEKVLVTCSRRINFR
        MVKKRKHSETLPAVSVKKDDVAPERSKRTLTGWKDKEV TKSESDSDHAVFRNKEKVLVTCSRRINFR
Subjt:  MVKKRKHSETLPAVSVKKDDVAPERSKRTLTGWKDKEVATKSESDSDHAVFRNKEKVLVTCSRRINFR
KAG7024028.1 Ribosome biogenesis protein BRX1-like 1 [Cucurbita argyrosperma subsp. argyrosperma]1.5e-36100Show/hide
Query:  MVKKRKHSETLPAVSVKKDDVAPERSKRTLTGWKDKEVATKSESDSDHAVFRNKEKVLVTCSRRINFRLSAFDVEYGITFATL
        MVKKRKHSETLPAVSVKKDDVAPERSKRTLTGWKDKEVATKSESDSDHAVFRNKEKVLVTCSRRINFRLSAFDVEYGITFATL
Subjt:  MVKKRKHSETLPAVSVKKDDVAPERSKRTLTGWKDKEVATKSESDSDHAVFRNKEKVLVTCSRRINFRLSAFDVEYGITFATL
XP_022961481.1 ribosome biogenesis protein BRX1 homolog 1-like [Cucurbita moschata]3.2e-2697.06Show/hide
Query:  MVKKRKHSETLPAVSVKKDDVAPERSKRTLTGWKDKEVATKSESDSDHAVFRNKEKVLVTCSRRINFR
        MVKKRKHSETLPAVSVKKDDVAPERSKRTLTGWKDKEV TKSES SDHAVFRNKEKVLVTCSRRINFR
Subjt:  MVKKRKHSETLPAVSVKKDDVAPERSKRTLTGWKDKEVATKSESDSDHAVFRNKEKVLVTCSRRINFR
XP_022968762.1 ribosome biogenesis protein BRX1 homolog 1-like [Cucurbita maxima]2.2e-2798.53Show/hide
Query:  MVKKRKHSETLPAVSVKKDDVAPERSKRTLTGWKDKEVATKSESDSDHAVFRNKEKVLVTCSRRINFR
        MVKKRKHSETLPAVSVKKDDVAPERSKRTLTGWKDKEV TKSESDSDHAVFRNKEKVLVTCSRRINFR
Subjt:  MVKKRKHSETLPAVSVKKDDVAPERSKRTLTGWKDKEVATKSESDSDHAVFRNKEKVLVTCSRRINFR
XP_023515692.1 ribosome biogenesis protein BRX1 homolog 1-like [Cucurbita pepo subsp. pepo]1.1e-2697.06Show/hide
Query:  MVKKRKHSETLPAVSVKKDDVAPERSKRTLTGWKDKEVATKSESDSDHAVFRNKEKVLVTCSRRINFR
        MVKKRKHSETLPAV VKKDDVAPERSKRTLTGWKDKEV TKSESDSDHAVFRNKEKVLVTCSRRINFR
Subjt:  MVKKRKHSETLPAVSVKKDDVAPERSKRTLTGWKDKEVATKSESDSDHAVFRNKEKVLVTCSRRINFR
TrEMBL top hitse value%identityAlignment
A0A1S3BQS3 ribosome biogenesis protein BRX1-like7.4e-2182.35Show/hide
Query:  MVKKRKHSETLPAVSVKKDDVAPERSKRTLTGWKDKEVATKSESDSDHAVFRNKEKVLVTCSRRINFR
        M KKRKHSET+P VSVKKD+ A ER KRTL GWKDKEV  KSE+ SDHAVFRNKEKVLVTCSRRINFR
Subjt:  MVKKRKHSETLPAVSVKKDDVAPERSKRTLTGWKDKEVATKSESDSDHAVFRNKEKVLVTCSRRINFR
A0A6J1EW75 ribosome biogenesis protein BRX1 homolog 1-like1.0e-2286.76Show/hide
Query:  MVKKRKHSETLPAVSVKKDDVAPERSKRTLTGWKDKEVATKSESDSDHAVFRNKEKVLVTCSRRINFR
        M KKRKHSETLP VSVKKD+ APER KRTLTGWKDKEVA ++ES SDHAVFRNKEKVLVTCSRRINFR
Subjt:  MVKKRKHSETLPAVSVKKDDVAPERSKRTLTGWKDKEVATKSESDSDHAVFRNKEKVLVTCSRRINFR
A0A6J1HE68 ribosome biogenesis protein BRX1 homolog 1-like1.5e-2697.06Show/hide
Query:  MVKKRKHSETLPAVSVKKDDVAPERSKRTLTGWKDKEVATKSESDSDHAVFRNKEKVLVTCSRRINFR
        MVKKRKHSETLPAVSVKKDDVAPERSKRTLTGWKDKEV TKSES SDHAVFRNKEKVLVTCSRRINFR
Subjt:  MVKKRKHSETLPAVSVKKDDVAPERSKRTLTGWKDKEVATKSESDSDHAVFRNKEKVLVTCSRRINFR
A0A6J1HZ18 ribosome biogenesis protein BRX1 homolog 1-like1.1e-2798.53Show/hide
Query:  MVKKRKHSETLPAVSVKKDDVAPERSKRTLTGWKDKEVATKSESDSDHAVFRNKEKVLVTCSRRINFR
        MVKKRKHSETLPAVSVKKDDVAPERSKRTLTGWKDKEV TKSESDSDHAVFRNKEKVLVTCSRRINFR
Subjt:  MVKKRKHSETLPAVSVKKDDVAPERSKRTLTGWKDKEVATKSESDSDHAVFRNKEKVLVTCSRRINFR
A0A6J1I0V9 ribosome biogenesis protein BRX1 homolog 1-like2.5e-2183.82Show/hide
Query:  MVKKRKHSETLPAVSVKKDDVAPERSKRTLTGWKDKEVATKSESDSDHAVFRNKEKVLVTCSRRINFR
        M KKRKHSETLP VSVKKD+ A ER KRTLTGWKDKEV  ++ES SDHAVFRNKEKVLVTCSRRINFR
Subjt:  MVKKRKHSETLPAVSVKKDDVAPERSKRTLTGWKDKEVATKSESDSDHAVFRNKEKVLVTCSRRINFR
SwissProt top hitse value%identityAlignment
Q9C928 Ribosome biogenesis protein BRX1 homolog 22.3e-1157.53Show/hide
Query:  MVKKRKHSET-LPAVSVKKDDVAPERSKRTLTGWKDKEVATKSESDSDHAV----FRNKEKVLVTCSRRINFR
        M +KRKHSET  PA   K D+ AP+R KRTL GWKDK   ++ E++   A+    F+NKEKVLVTCSRRI+FR
Subjt:  MVKKRKHSET-LPAVSVKKDDVAPERSKRTLTGWKDKEVATKSESDSDHAV----FRNKEKVLVTCSRRINFR
Q9LE16 Ribosome biogenesis protein BRX1 homolog 13.8e-1463.24Show/hide
Query:  MVKKRKHSETLPAVSVKKDDVAPERSKRTLTGWKDKEVATKSESDSDHAVFRNKEKVLVTCSRRINFR
        M +KRKHSET+ A  VK  D APER +RTL GWKDK+   ++   +  +VFRNKEKVLVTCSRRINFR
Subjt:  MVKKRKHSETLPAVSVKKDDVAPERSKRTLTGWKDKEVATKSESDSDHAVFRNKEKVLVTCSRRINFR
Arabidopsis top hitse value%identityAlignment
AT1G52930.1 Ribosomal RNA processing Brix domain protein1.6e-1257.53Show/hide
Query:  MVKKRKHSET-LPAVSVKKDDVAPERSKRTLTGWKDKEVATKSESDSDHAV----FRNKEKVLVTCSRRINFR
        M +KRKHSET  PA   K D+ AP+R KRTL GWKDK   ++ E++   A+    F+NKEKVLVTCSRRI+FR
Subjt:  MVKKRKHSET-LPAVSVKKDDVAPERSKRTLTGWKDKEVATKSESDSDHAV----FRNKEKVLVTCSRRINFR
AT3G15460.1 Ribosomal RNA processing Brix domain protein2.7e-1563.24Show/hide
Query:  MVKKRKHSETLPAVSVKKDDVAPERSKRTLTGWKDKEVATKSESDSDHAVFRNKEKVLVTCSRRINFR
        M +KRKHSET+ A  VK  D APER +RTL GWKDK+   ++   +  +VFRNKEKVLVTCSRRINFR
Subjt:  MVKKRKHSETLPAVSVKKDDVAPERSKRTLTGWKDKEVATKSESDSDHAVFRNKEKVLVTCSRRINFR

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGAAGAAGAGGAAGCATAGCGAGACTTTGCCGGCGGTATCGGTTAAGAAGGATGATGTTGCCCCTGAGAGATCCAAGCGGACGCTCACGGGTTGGAAAGACAAAGA
AGTCGCAACAAAGAGTGAATCTGATTCTGATCATGCTGTTTTTCGAAATAAAGAGAAAGTTCTTGTCACTTGTTCCCGCCGAATCAATTTTAGGTTATCGGCATTTGATG
TTGAATATGGTATCACTTTTGCCACATTGTAA
mRNA sequenceShow/hide mRNA sequence
CGACGACGTCTCAGCGGTTGCCGCCGCACGCTGCACTCTCAACTGTTTCAGTCTCAGTATTCCGTCGAACTCGCCGTTGCTCCCTCCCTCTCATACTCTCTCGCCTCTCC
GAGCAGTCAGAAACAGTGGTTCAGCCACTAACCCTCGGCGTGGGGGTGACATTCTCAATGGTGAAGAAGAGGAAGCATAGCGAGACTTTGCCGGCGGTATCGGTTAAGAA
GGATGATGTTGCCCCTGAGAGATCCAAGCGGACGCTCACGGGTTGGAAAGACAAAGAAGTCGCAACAAAGAGTGAATCTGATTCTGATCATGCTGTTTTTCGAAATAAAG
AGAAAGTTCTTGTCACTTGTTCCCGCCGAATCAATTTTAGGTTATCGGCATTTGATGTTGAATATGGTATCACTTTTGCCACATTGTAA
Protein sequenceShow/hide protein sequence
MVKKRKHSETLPAVSVKKDDVAPERSKRTLTGWKDKEVATKSESDSDHAVFRNKEKVLVTCSRRINFRLSAFDVEYGITFATL