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Carg27570 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg27570
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionLOW QUALITY PROTEIN: uncharacterized protein LOC116190081
Genome locationCarg_Chr11:7933341..7935099
RNA-Seq ExpressionCarg27570
SyntenyCarg27570
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAC9268306.1 hypothetical protein E3N88_46072 [Mikania micrantha]9.1e-4245.02Show/hide
Query:  MSSSTVHFPAILVTVTCNPCKCVRTPLSGRERKEISRSNPPGSNPGVNFPI------GRLRVHRGSLLCLHT-RLSFSESSTGP-PTTNPRPCLLHKNTG
        MSS TV+FP ILVTVTCNP +CVRTPLSGRERK+ S   P        FP       G   VH     C +T    F ++     P    R  LL KN G
Subjt:  MSSSTVHFPAILVTVTCNPCKCVRTPLSGRERKEISRSNPPGSNPGVNFPI------GRLRVHRGSLLCLHT-RLSFSESSTGP-PTTNPRPCLLHKNTG

Query:  TQAPEEGRPTNLRCKAPHLIKIILAYS-------------------------------------------LISAYNSGIC-----KARAPCDLLKDHYEP
        TQAPEEG PTN+RCKAPHLIKIILAYS                                           L S Y    C        APCDLLKDHYEP
Subjt:  TQAPEEGRPTNLRCKAPHLIKIILAYS-------------------------------------------LISAYNSGIC-----KARAPCDLLKDHYEP

Query:  SP---YRTRM------NSGIQAGHTHPGASALLWGRVYIYISRGEEREEVARLEEERVAPRLTDFSESEEDLSFDDPEQEEAALDVRSAGK
        SP   +R +       N     GHTHPGA ALLWG    +I RG          + RVA RLTD SESEEDLS D PE E AALD RS  K
Subjt:  SP---YRTRM------NSGIQAGHTHPGASALLWGRVYIYISRGEEREEVARLEEERVAPRLTDFSESEEDLSFDDPEQEEAALDVRSAGK

KAD0429716.1 hypothetical protein E3N88_44274 [Mikania micrantha]2.2e-4044.91Show/hide
Query:  MSSSTVHFPAILVTVTCNPCKCVRTPLSGRERKEISRSNPPGSNPGVNFPI------GRLRVHRGSLLCLHT-RLSFSESSTGP-PTTNPRPCLLHKNTG
        MSS TV+FP ILVTVTCNP +CVRTPLSGRERK+ S   P        FP       G   VH     C +T    F ++     P    R  LL KN G
Subjt:  MSSSTVHFPAILVTVTCNPCKCVRTPLSGRERKEISRSNPPGSNPGVNFPI------GRLRVHRGSLLCLHT-RLSFSESSTGP-PTTNPRPCLLHKNTG

Query:  TQAPEEGRPTNLRCKAPHLIKIILAYS-------------------------------------------LISAYNSGIC-----KARAPCDLLKDHYEP
        TQAPEEG PTN+RCKAPHLIKIILAYS                                           L S Y    C        APCDLLKDHYEP
Subjt:  TQAPEEGRPTNLRCKAPHLIKIILAYS-------------------------------------------LISAYNSGIC-----KARAPCDLLKDHYEP

Query:  SP---YRTRM------NSGIQAGHTHPGASALLWGRVYIYISRGEEREEVARLEEERVAPRLTDFSESEEDLSFDDPEQEEAALD
        SP   +R +       N     GHTHPGA ALLWG    +I RG          + RVA RLTD SESEEDLS D PE E AALD
Subjt:  SP---YRTRM------NSGIQAGHTHPGASALLWGRVYIYISRGEEREEVARLEEERVAPRLTDFSESEEDLSFDDPEQEEAALD

KAG7022402.1 hypothetical protein SDJN02_16133, partial [Cucurbita argyrosperma subsp. argyrosperma]3.2e-135100Show/hide
Query:  MSSSTVHFPAILVTVTCNPCKCVRTPLSGRERKEISRSNPPGSNPGVNFPIGRLRVHRGSLLCLHTRLSFSESSTGPPTTNPRPCLLHKNTGTQAPEEGR
        MSSSTVHFPAILVTVTCNPCKCVRTPLSGRERKEISRSNPPGSNPGVNFPIGRLRVHRGSLLCLHTRLSFSESSTGPPTTNPRPCLLHKNTGTQAPEEGR
Subjt:  MSSSTVHFPAILVTVTCNPCKCVRTPLSGRERKEISRSNPPGSNPGVNFPIGRLRVHRGSLLCLHTRLSFSESSTGPPTTNPRPCLLHKNTGTQAPEEGR

Query:  PTNLRCKAPHLIKIILAYSLISAYNSGICKARAPCDLLKDHYEPSPYRTRMNSGIQAGHTHPGASALLWGRVYIYISRGEEREEVARLEEERVAPRLTDF
        PTNLRCKAPHLIKIILAYSLISAYNSGICKARAPCDLLKDHYEPSPYRTRMNSGIQAGHTHPGASALLWGRVYIYISRGEEREEVARLEEERVAPRLTDF
Subjt:  PTNLRCKAPHLIKIILAYSLISAYNSGICKARAPCDLLKDHYEPSPYRTRMNSGIQAGHTHPGASALLWGRVYIYISRGEEREEVARLEEERVAPRLTDF

Query:  SESEEDLSFDDPEQEEAALDVRSAGKERRGIGCPRAAALG
        SESEEDLSFDDPEQEEAALDVRSAGKERRGIGCPRAAALG
Subjt:  SESEEDLSFDDPEQEEAALDVRSAGKERRGIGCPRAAALG

XP_027185400.1 LOW QUALITY PROTEIN: uncharacterized protein LOC113783458 [Coffea eugenioides]2.6e-3644.44Show/hide
Query:  MSSSTVHFPAILVTVTCNPCKCVRTPLSGRERKEISRSNPPGSNPGVNFP----IGRLRVHRGSLLCLHTRLSFSESSTGPPTTNPR--PCLLHKNTGTQ
        MSS TV+FPAILVTVTCNP +CVRTPLSG+E+K+ S   P        FP    IGRLRV RGSLLCLHTRL FSESS GPPTT+ R    +  K  G +
Subjt:  MSSSTVHFPAILVTVTCNPCKCVRTPLSGRERKEISRSNPPGSNPGVNFP----IGRLRVHRGSLLCLHTRLSFSESSTGPPTTNPR--PCLLHKNTGTQ

Query:  APE-------EGRP-TNLRCKAPHLIKIILAYSLIS--AYNSGICKARAPCDLLKDHY-----EPSPYRTRMNSGIQA----------------------
         P+       + +P T+LR     L K      L +   YN  I   R     ++  Y     +P+   +    G++                       
Subjt:  APE-------EGRP-TNLRCKAPHLIKIILAYSLIS--AYNSGICKARAPCDLLKDHY-----EPSPYRTRMNSGIQA----------------------

Query:  -------GHTHPGASALLWGRVYIYISRGEEREEVARLEEERVAPRLTDFSESEEDLSFDDPEQEEAALDVRSAGKERR
               GHTH GA  LLWG V+ Y  RG          E RVA RLTDFSESEEDLS DDPEQE AALDVRS  KERR
Subjt:  -------GHTHPGASALLWGRVYIYISRGEEREEVARLEEERVAPRLTDFSESEEDLSFDDPEQEEAALDVRSAGKERR

XP_028115968.1 LOW QUALITY PROTEIN: uncharacterized protein LOC114313749 [Camellia sinensis]1.7e-4848.62Show/hide
Query:  MSSSTVHFPAILVTVTCNPCKCVRTPLSGRERKEISRSNPPGSNPGVNFP----IGRLRVHRGSLLCLHTRLSFSESSTGPPTTNPRPCLLHKNTGTQAP
        MSS TV+FPAILVTVTCNP +CVRTPLSGRERK+ S   P        FP    IGRLRV RGSLLCLHTRL FSESS GPPTT+ RP       G + P
Subjt:  MSSSTVHFPAILVTVTCNPCKCVRTPLSGRERKEISRSNPPGSNPGVNFP----IGRLRVHRGSLLCLHTRLSFSESSTGPPTTNPRPCLLHKNTGTQAP

Query:  E-------EGRP-TNLRCKAPHLIKIILAYSLISA--YNSGICKARAPCDLLKDHY-----EPSPYRTRMNSGIQA------------------------
        +       + +P T+LR     L K      L +   YN  I   R     ++  Y     +P+   +    G++                         
Subjt:  E-------EGRP-TNLRCKAPHLIKIILAYSLISA--YNSGICKARAPCDLLKDHY-----EPSPYRTRMNSGIQA------------------------

Query:  -------GHTHPGASALLWGRVYIYISRGEEREEVARLEEERVAPRLTDFSESEEDLSFDDPEQEEAALDVRSAGKERRGIGCPRAAALG
               GHTHPGASALLWG V+ Y  RG          E RVAPRLTDFSESEEDLS DDPEQE AALDVRSA KERRGIGCPRAAA G
Subjt:  -------GHTHPGASALLWGRVYIYISRGEEREEVARLEEERVAPRLTDFSESEEDLSFDDPEQEEAALDVRSAGKERRGIGCPRAAALG

TrEMBL top hitse value%identityAlignment
A0A1P8B2W4 Uncharacterized protein4.9e-2542.01Show/hide
Query:  MSSSTVHFPAILVTVTCNPCKCVRTPLSGRERKEISRSNPPGSNPGVNFP----IGRLRVHRGSLLCLHTRLSFSESSTGPPTTNPRP--CLLHKNTGTQ
        MSS TVHFPAILVTVTCNP  CVRTPLSGRERK+ S   P        FP    IGRLRV RGSLLCLHTRL FSES  GPPTT+ RP   +  K  G +
Subjt:  MSSSTVHFPAILVTVTCNPCKCVRTPLSGRERKEISRSNPPGSNPGVNFP----IGRLRVHRGSLLCLHTRLSFSESSTGPPTTNPRP--CLLHKNTGTQ

Query:  APEEGRP--------TNLRCKAPHLIKIILAYSLIS--AYNSGICKARAPCDLLKDHY----------------EPSPYRTRM-----------------
         P+            T+LR     L K      L +   YN  I   R     ++  Y                E   +  RM                 
Subjt:  APEEGRP--------TNLRCKAPHLIKIILAYSLIS--AYNSGICKARAPCDLLKDHY----------------EPSPYRTRM-----------------

Query:  -NSGIQAGHTHPGASALLW
         N     GHTHPGASALLW
Subjt:  -NSGIQAGHTHPGASALLW

A0A5N6L7A8 Uncharacterized protein4.4e-4245.02Show/hide
Query:  MSSSTVHFPAILVTVTCNPCKCVRTPLSGRERKEISRSNPPGSNPGVNFPI------GRLRVHRGSLLCLHT-RLSFSESSTGP-PTTNPRPCLLHKNTG
        MSS TV+FP ILVTVTCNP +CVRTPLSGRERK+ S   P        FP       G   VH     C +T    F ++     P    R  LL KN G
Subjt:  MSSSTVHFPAILVTVTCNPCKCVRTPLSGRERKEISRSNPPGSNPGVNFPI------GRLRVHRGSLLCLHT-RLSFSESSTGP-PTTNPRPCLLHKNTG

Query:  TQAPEEGRPTNLRCKAPHLIKIILAYS-------------------------------------------LISAYNSGIC-----KARAPCDLLKDHYEP
        TQAPEEG PTN+RCKAPHLIKIILAYS                                           L S Y    C        APCDLLKDHYEP
Subjt:  TQAPEEGRPTNLRCKAPHLIKIILAYS-------------------------------------------LISAYNSGIC-----KARAPCDLLKDHYEP

Query:  SP---YRTRM------NSGIQAGHTHPGASALLWGRVYIYISRGEEREEVARLEEERVAPRLTDFSESEEDLSFDDPEQEEAALDVRSAGK
        SP   +R +       N     GHTHPGA ALLWG    +I RG          + RVA RLTD SESEEDLS D PE E AALD RS  K
Subjt:  SP---YRTRM------NSGIQAGHTHPGASALLWGRVYIYISRGEEREEVARLEEERVAPRLTDFSESEEDLSFDDPEQEEAALDVRSAGK

A0A5N6LCQ5 Uncharacterized protein1.1e-4044.91Show/hide
Query:  MSSSTVHFPAILVTVTCNPCKCVRTPLSGRERKEISRSNPPGSNPGVNFPI------GRLRVHRGSLLCLHT-RLSFSESSTGP-PTTNPRPCLLHKNTG
        MSS TV+FP ILVTVTCNP +CVRTPLSGRERK+ S   P        FP       G   VH     C +T    F ++     P    R  LL KN G
Subjt:  MSSSTVHFPAILVTVTCNPCKCVRTPLSGRERKEISRSNPPGSNPGVNFPI------GRLRVHRGSLLCLHT-RLSFSESSTGP-PTTNPRPCLLHKNTG

Query:  TQAPEEGRPTNLRCKAPHLIKIILAYS-------------------------------------------LISAYNSGIC-----KARAPCDLLKDHYEP
        TQAPEEG PTN+RCKAPHLIKIILAYS                                           L S Y    C        APCDLLKDHYEP
Subjt:  TQAPEEGRPTNLRCKAPHLIKIILAYS-------------------------------------------LISAYNSGIC-----KARAPCDLLKDHYEP

Query:  SP---YRTRM------NSGIQAGHTHPGASALLWGRVYIYISRGEEREEVARLEEERVAPRLTDFSESEEDLSFDDPEQEEAALD
        SP   +R +       N     GHTHPGA ALLWG    +I RG          + RVA RLTD SESEEDLS D PE E AALD
Subjt:  SP---YRTRM------NSGIQAGHTHPGASALLWGRVYIYISRGEEREEVARLEEERVAPRLTDFSESEEDLSFDDPEQEEAALD

A0A654GF96 Uncharacterized protein4.9e-2542.01Show/hide
Query:  MSSSTVHFPAILVTVTCNPCKCVRTPLSGRERKEISRSNPPGSNPGVNFP----IGRLRVHRGSLLCLHTRLSFSESSTGPPTTNPRP--CLLHKNTGTQ
        MSS TVHFPAILVTVTCNP  CVRTPLSGRERK+ S   P        FP    IGRLRV RGSLLCLHTRL FSES  GPPTT+ RP   +  K  G +
Subjt:  MSSSTVHFPAILVTVTCNPCKCVRTPLSGRERKEISRSNPPGSNPGVNFP----IGRLRVHRGSLLCLHTRLSFSESSTGPPTTNPRP--CLLHKNTGTQ

Query:  APEEGRP--------TNLRCKAPHLIKIILAYSLIS--AYNSGICKARAPCDLLKDHY----------------EPSPYRTRM-----------------
         P+            T+LR     L K      L +   YN  I   R     ++  Y                E   +  RM                 
Subjt:  APEEGRP--------TNLRCKAPHLIKIILAYSLIS--AYNSGICKARAPCDLLKDHY----------------EPSPYRTRM-----------------

Query:  -NSGIQAGHTHPGASALLW
         N     GHTHPGASALLW
Subjt:  -NSGIQAGHTHPGASALLW

A0A6P8BX63 LOW QUALITY PROTEIN: uncharacterized protein LOC1161900814.7e-2842.67Show/hide
Query:  MSSSTVHFPAILVTVTCNPCKCVRTPLSGRERKEISRSNPPGSNPGVNFP----IGRLRVHRGSLLCLHTRLSFSESSTGPPTTNPRP--CLLHKNTGTQ
        MSS TVHFPAILVTVTCNP +CVRTPL+GRERK+ S   P        FP    IGRLRV RGSLLCLHTRL FSESS GPPTT+ RP   +  K  G +
Subjt:  MSSSTVHFPAILVTVTCNPCKCVRTPLSGRERKEISRSNPPGSNPGVNFP----IGRLRVHRGSLLCLHTRLSFSESSTGPPTTNPRP--CLLHKNTGTQ

Query:  APE-------EGRP-TNLRCKAPHLIKIILAYSLIS--AYNSGICKARAPCDLLKDHY-----EPSP------------------------------YRT
         P+       + +P T+LR     L K      L +   YN  I   R     ++  Y     +P+                               Y+ 
Subjt:  APE-------EGRP-TNLRCKAPHLIKIILAYSLIS--AYNSGICKARAPCDLLKDHY-----EPSP------------------------------YRT

Query:  RMNSGIQAGHTHPGASALLWGRVY--IYISRG
           SG   GHTHPGASALLWG V+  I +SRG
Subjt:  RMNSGIQAGHTHPGASALLWGRVY--IYISRG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGTCGAGTACTGTTCACTTCCCCGCCATTCTTGTAACCGTCACCTGTAATCCGTGCAAGTGTGTCCGCACCCCCCTGAGTGGACGAGAAAGAAAGGAGATTTCTCG
GAGCAACCCCCCAGGTTCCAACCCAGGAGTCAACTTTCCCATAGGTCGTCTGAGGGTTCACCGCGGTTCATTGTTGTGCTTACACACTAGGCTATCCTTCTCTGAAAGCT
CCACGGGACCACCTACCACTAATCCTCGGCCCTGTTTATTGCACAAAAACACCGGGACGCAGGCCCCTGAAGAGGGAAGGCCAACGAATCTCAGATGCAAAGCCCCGCAC
CTCATTAAGATCATATTGGCATACTCTCTGATAAGCGCCTACAATTCTGGAATTTGCAAAGCTAGAGCACCTTGTGATCTTCTCAAAGATCATTACGAGCCCTCTCCCTA
TCGGACGAGAATGAATTCGGGAATCCAGGCAGGACATACTCATCCTGGAGCTTCTGCTCTCCTCTGGGGAAGAGTTTATATATATATCTCGAGAGGTGAGGAGAGGGAGG
AAGTAGCTCGACTCGAAGAGGAGAGGGTAGCCCCCCGCTTGACCGATTTCTCGGAATCAGAGGAAGATCTCTCATTTGATGACCCTGAACAAGAAGAAGCTGCTCTCGAT
GTGAGATCCGCAGGAAAAGAAAGAAGAGGAATTGGATGCCCCAGAGCAGCAGCCCTCGGATAA
mRNA sequenceShow/hide mRNA sequence
ATGTCGTCGAGTACTGTTCACTTCCCCGCCATTCTTGTAACCGTCACCTGTAATCCGTGCAAGTGTGTCCGCACCCCCCTGAGTGGACGAGAAAGAAAGGAGATTTCTCG
GAGCAACCCCCCAGGTTCCAACCCAGGAGTCAACTTTCCCATAGGTCGTCTGAGGGTTCACCGCGGTTCATTGTTGTGCTTACACACTAGGCTATCCTTCTCTGAAAGCT
CCACGGGACCACCTACCACTAATCCTCGGCCCTGTTTATTGCACAAAAACACCGGGACGCAGGCCCCTGAAGAGGGAAGGCCAACGAATCTCAGATGCAAAGCCCCGCAC
CTCATTAAGATCATATTGGCATACTCTCTGATAAGCGCCTACAATTCTGGAATTTGCAAAGCTAGAGCACCTTGTGATCTTCTCAAAGATCATTACGAGCCCTCTCCCTA
TCGGACGAGAATGAATTCGGGAATCCAGGCAGGACATACTCATCCTGGAGCTTCTGCTCTCCTCTGGGGAAGAGTTTATATATATATCTCGAGAGGTGAGGAGAGGGAGG
AAGTAGCTCGACTCGAAGAGGAGAGGGTAGCCCCCCGCTTGACCGATTTCTCGGAATCAGAGGAAGATCTCTCATTTGATGACCCTGAACAAGAAGAAGCTGCTCTCGAT
GTGAGATCCGCAGGAAAAGAAAGAAGAGGAATTGGATGCCCCAGAGCAGCAGCCCTCGGATAA
Protein sequenceShow/hide protein sequence
MSSSTVHFPAILVTVTCNPCKCVRTPLSGRERKEISRSNPPGSNPGVNFPIGRLRVHRGSLLCLHTRLSFSESSTGPPTTNPRPCLLHKNTGTQAPEEGRPTNLRCKAPH
LIKIILAYSLISAYNSGICKARAPCDLLKDHYEPSPYRTRMNSGIQAGHTHPGASALLWGRVYIYISRGEEREEVARLEEERVAPRLTDFSESEEDLSFDDPEQEEAALD
VRSAGKERRGIGCPRAAALG