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Carg27575 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg27575
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description60S ribosomal protein L39
Genome locationCarg_Chr11:8005089..8006259
RNA-Seq ExpressionCarg27575
SyntenyCarg27575
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR000077 - Ribosomal protein L39e
IPR020083 - Ribosomal protein L39e, conserved site
IPR023626 - Ribosomal protein L39e domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EXB38641.1 60S ribosomal protein L39 [Morus notabilis]1.7e-20100Show/hide
Query:  QPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        QPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  QPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
KAA0050937.1 60S ribosomal protein L39 [Cucumis melo var. makuwa]6.7e-22100Show/hide
Query:  MGQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MGQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  MGQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
OWM65802.1 hypothetical protein CDL15_Pgr015227 [Punica granatum]3.3e-2196.23Show/hide
Query:  MGQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        +GQPSHKTFRIKKKLAKKMRQNRPIPHWIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  MGQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
PKI64675.1 hypothetical protein CRG98_014891 [Punica granatum]2.8e-2098.04Show/hide
Query:  QPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        QPSHKTFRIKKKLAKKMRQNRPIPHWIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  QPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
THU60008.1 hypothetical protein C4D60_Mb07t08090 [Musa balbisiana]9.7e-2196.15Show/hide
Query:  GQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        G+PSHKTFRIKKKLAKKMRQNRPIPHWIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  GQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
TrEMBL top hitse value%identityAlignment
A0A218W104 Uncharacterized protein1.6e-2196.23Show/hide
Query:  MGQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        +GQPSHKTFRIKKKLAKKMRQNRPIPHWIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  MGQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
A0A2I0K803 Uncharacterized protein1.4e-2098.04Show/hide
Query:  QPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        QPSHKTFRIKKKLAKKMRQNRPIPHWIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  QPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
A0A4S8JDT2 Uncharacterized protein4.7e-2196.15Show/hide
Query:  GQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        G+PSHKTFRIKKKLAKKMRQNRPIPHWIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  GQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
A0A5A7U961 60S ribosomal protein L393.3e-22100Show/hide
Query:  MGQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MGQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  MGQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
W9R5P2 60S ribosomal protein L398.0e-21100Show/hide
Query:  QPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        QPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  QPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
SwissProt top hitse value%identityAlignment
P51424 60S ribosomal protein L39-12.7e-2194Show/hide
Query:  PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        PSHK+F IKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
P51425 60S ribosomal protein L395.4e-2296Show/hide
Query:  PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        PSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
P51426 60S ribosomal protein L39-25.4e-2296Show/hide
Query:  PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        PSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Q5SMI4 60S ribosomal protein L39-31.6e-2194Show/hide
Query:  PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        PSHKTF+IKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Q6KAJ8 60S ribosomal protein L39-15.4e-2296Show/hide
Query:  PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        PSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Arabidopsis top hitse value%identityAlignment
AT2G25210.1 Ribosomal protein L39 family protein4.4e-1997.67Show/hide
Query:  IKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        IKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  IKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
AT3G02190.1 Ribosomal protein L39 family protein6.1e-2190Show/hide
Query:  PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        PSHK+F IKKKL KKMRQNRPIP+WIRLRTDN IRYNAKRRHWRRTKLGF
Subjt:  PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
AT4G31985.1 Ribosomal protein L39 family protein1.9e-2294Show/hide
Query:  PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        PSHK+F IKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTCAGCCGTCTCACAAGACCTTTAGAATCAAGAAGAAGTTGGCCAAGAAGATGAGACAGAACAGGCCCATTCCTCACTGGATCCGCTTGAGGACCGACAATACCAT
CAGGTATAATGCGAAACGAAGGCACTGGCGCCGCACCAAGCTTGGATTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGTCAGCCGTCTCACAAGACCTTTAGAATCAAGAAGAAGTTGGCCAAGAAGATGAGACAGAACAGGCCCATTCCTCACTGGATCCGCTTGAGGACCGACAATACCAT
CAGGTATAATGCGAAACGAAGGCACTGGCGCCGCACCAAGCTTGGATTTTGAGGTGTTCCTCTTGTGATTTGCTCTTCATCCTGTTTTGAACCTATTTAAGTGTTATGAT
GTTAGTTGTGGAGAAGACGAAGGATAGATGTTTGAATCTTTTTGCGTCTCAATTTAAGAACTTATGGAATAGAAAATCATGTAGTCTTTAGGCTGGCATCTATCTATGTT
CAATCTATATCTGGAGTAATTTCAATTCTTAAGATAAATCTCGTGTTCATTTTGTTTAATTTCTATCACAGTTCATTTCTGGTACCCCAGTTTGGAATTTTATTCTGATC
TTAATTGCTCAAATATTCATGTGGATGAGCTGAGCTGAGCTGAGATGAGCTGGGTGTCTACATTTCTGTTGCTTTACAAATTGTTCTTCCGATTCATGTATTTTTCTTAG
TAAAGCTATTTGTAAGTGTTTTCTAAAACTATGTAATTGGTGTTAATTTTTGTAACTGTCGTAAATTTTGTTTTAAATAGGGTTTTGTTAAAACTATTTGTAATTTGTAT
GGTGAAAATTAATATATAAATTCCTACAAAATGGGTACACTTAACTAAATCTACCCTTCTTTTTTACACTCTCACAACCATAAATATCAACACATAATTTCTACAATAAC
CACAATCAATTCTCTAAATAACCTGTAAACTTTTCAGAAATTTAAAATATCTAATAAACTTTAAATTTATTTTCTTGTCTCATAAATTCATAATTTTTAAAATCATCTGA
TTAGTTAGAAATAAG
Protein sequenceShow/hide protein sequence
MGQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF