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Carg27590 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg27590
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionType IV secretion system protein virB10-like
Genome locationCarg_Chr11:8451640..8451903
RNA-Seq ExpressionCarg27590
SyntenyCarg27590
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6588645.1 hypothetical protein SDJN03_17210, partial [Cucurbita argyrosperma subsp. sororia]2.7e-44100Show/hide
Query:  MIGRVCFGRPVFGYNAHYDVEDWVEKKCATCLDGSLDPPPHLRPPPPIEAIPVSEPLGEPPNIKEGGDGDRERENLQSVAPGSGGES
        MIGRVCFGRPVFGYNAHYDVEDWVEKKCATCLDGSLDPPPHLRPPPPIEAIPVSEPLGEPPNIKEGGDGDRERENLQSVAPGSGGES
Subjt:  MIGRVCFGRPVFGYNAHYDVEDWVEKKCATCLDGSLDPPPHLRPPPPIEAIPVSEPLGEPPNIKEGGDGDRERENLQSVAPGSGGES

KAG7022440.1 hypothetical protein SDJN02_16171, partial [Cucurbita argyrosperma subsp. argyrosperma]2.7e-44100Show/hide
Query:  MIGRVCFGRPVFGYNAHYDVEDWVEKKCATCLDGSLDPPPHLRPPPPIEAIPVSEPLGEPPNIKEGGDGDRERENLQSVAPGSGGES
        MIGRVCFGRPVFGYNAHYDVEDWVEKKCATCLDGSLDPPPHLRPPPPIEAIPVSEPLGEPPNIKEGGDGDRERENLQSVAPGSGGES
Subjt:  MIGRVCFGRPVFGYNAHYDVEDWVEKKCATCLDGSLDPPPHLRPPPPIEAIPVSEPLGEPPNIKEGGDGDRERENLQSVAPGSGGES

XP_022927713.1 uncharacterized protein LOC111434531 [Cucurbita moschata]4.3e-4296.55Show/hide
Query:  MIGRVCFGRPVFGYNAHYDVEDWVEKKCATCLDGSLDPPPHLRPPPPIEAIPVSEPLGEPPNIKEGGDGDRERENLQSVAPGSGGES
        MIGRVCFGRPVFGYNA YDVEDWVEKKCA+CLDGSLDPPPHLRPPPPIEAIPVSEPLG PPNIKEGGDGDRERENLQSVAPGSGGES
Subjt:  MIGRVCFGRPVFGYNAHYDVEDWVEKKCATCLDGSLDPPPHLRPPPPIEAIPVSEPLGEPPNIKEGGDGDRERENLQSVAPGSGGES

XP_022989510.1 uncharacterized protein LOC111486567 [Cucurbita maxima]4.0e-4093.1Show/hide
Query:  MIGRVCFGRPVFGYNAHYDVEDWVEKKCATCLDGSLDPPPHLRPPPPIEAIPVSEPLGEPPNIKEGGDGDRERENLQSVAPGSGGES
        MIGRVCFGRPVFGYNAHYDVEDWVEKKCATCLDGSLDPPP LRPPPPIEAIPV+EPLG PPNIKE GDGD+ERENLQSV PGSGGES
Subjt:  MIGRVCFGRPVFGYNAHYDVEDWVEKKCATCLDGSLDPPPHLRPPPPIEAIPVSEPLGEPPNIKEGGDGDRERENLQSVAPGSGGES

XP_023530142.1 uncharacterized protein LOC111792788 [Cucurbita pepo subsp. pepo]1.2e-3993.1Show/hide
Query:  MIGRVCFGRPVFGYNAHYDVEDWVEKKCATCLDGSLDPPPHLRPPPPIEAIPVSEPLGEPPNIKEG--GDGDRERENLQSVAPGSGG
        MIGRVCFGRPVFGYNAHYDVEDWVEKKCA+CLDGSLDPPPHLRPPPPIEAIPV+EPLG PPNIKEG  GDGDRERENLQSV PGSGG
Subjt:  MIGRVCFGRPVFGYNAHYDVEDWVEKKCATCLDGSLDPPPHLRPPPPIEAIPVSEPLGEPPNIKEG--GDGDRERENLQSVAPGSGG

TrEMBL top hitse value%identityAlignment
A0A1S3C1T9 type IV secretion system protein virB10-like2.4e-3070.53Show/hide
Query:  MIGRVCFGRPVFGYNAHYDVEDWVEKKCATCLDGSLD-------PPPHLRPPPPIEAIPVSEPL-GEPPNIKEGGDGDRERENLQSVAPGSGGES
        MIGR+C GRPVFGY AHYDVEDWVEKKCA+CLDGSLD       PPPHLR PPP++++PV+EPL G PP IK+G D D + ENLQS APG+GGES
Subjt:  MIGRVCFGRPVFGYNAHYDVEDWVEKKCATCLDGSLD-------PPPHLRPPPPIEAIPVSEPL-GEPPNIKEGGDGDRERENLQSVAPGSGGES

A0A5A7SPN0 Type IV secretion system protein virB10-like2.4e-3070.53Show/hide
Query:  MIGRVCFGRPVFGYNAHYDVEDWVEKKCATCLDGSLD-------PPPHLRPPPPIEAIPVSEPL-GEPPNIKEGGDGDRERENLQSVAPGSGGES
        MIGR+C GRPVFGY AHYDVEDWVEKKCA+CLDGSLD       PPPHLR PPP++++PV+EPL G PP IK+G D D + ENLQS APG+GGES
Subjt:  MIGRVCFGRPVFGYNAHYDVEDWVEKKCATCLDGSLD-------PPPHLRPPPPIEAIPVSEPL-GEPPNIKEGGDGDRERENLQSVAPGSGGES

A0A5D3C4A1 Type IV secretion system protein virB10-like8.3e-3173.63Show/hide
Query:  MIGRVCFGRPVFGYNAHYDVEDWVEKKCATCLDGSLD---PPPHLRPPPPIEAIPVSEPL-GEPPNIKEGGDGDRERENLQSVAPGSGGES
        MIGR+C GRPVFGY AHYDVEDWVEKKCA+CLDGSLD   PPPHLR PPP++++PV+EPL G PP IK+G D D + ENLQS APG+GGES
Subjt:  MIGRVCFGRPVFGYNAHYDVEDWVEKKCATCLDGSLD---PPPHLRPPPPIEAIPVSEPL-GEPPNIKEGGDGDRERENLQSVAPGSGGES

A0A6J1ELS6 uncharacterized protein LOC1114345312.1e-4296.55Show/hide
Query:  MIGRVCFGRPVFGYNAHYDVEDWVEKKCATCLDGSLDPPPHLRPPPPIEAIPVSEPLGEPPNIKEGGDGDRERENLQSVAPGSGGES
        MIGRVCFGRPVFGYNA YDVEDWVEKKCA+CLDGSLDPPPHLRPPPPIEAIPVSEPLG PPNIKEGGDGDRERENLQSVAPGSGGES
Subjt:  MIGRVCFGRPVFGYNAHYDVEDWVEKKCATCLDGSLDPPPHLRPPPPIEAIPVSEPLGEPPNIKEGGDGDRERENLQSVAPGSGGES

A0A6J1JMK0 uncharacterized protein LOC1114865672.0e-4093.1Show/hide
Query:  MIGRVCFGRPVFGYNAHYDVEDWVEKKCATCLDGSLDPPPHLRPPPPIEAIPVSEPLGEPPNIKEGGDGDRERENLQSVAPGSGGES
        MIGRVCFGRPVFGYNAHYDVEDWVEKKCATCLDGSLDPPP LRPPPPIEAIPV+EPLG PPNIKE GDGD+ERENLQSV PGSGGES
Subjt:  MIGRVCFGRPVFGYNAHYDVEDWVEKKCATCLDGSLDPPPHLRPPPPIEAIPVSEPLGEPPNIKEGGDGDRERENLQSVAPGSGGES

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G57500.1 unknown protein1.2e-0536.36Show/hide
Query:  MIGRVCFGRPVFGYNAHYDVEDWVEKKCATCLDGSL-------DPPPHLRPPPPIEAIPVSEPLGE
        +  R+C GR +  +   +D+E WVE+KC +C+D  +        PPP   PPPP  A   S+P  E
Subjt:  MIGRVCFGRPVFGYNAHYDVEDWVEKKCATCLDGSL-------DPPPHLRPPPPIEAIPVSEPLGE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCGGCCGCGTCTGCTTTGGGCGTCCCGTTTTTGGCTACAACGCCCACTACGACGTCGAAGATTGGGTCGAGAAGAAATGTGCTACCTGCCTCGATGGGTCTCTAGA
CCCTCCCCCGCATCTCCGCCCCCCGCCACCGATCGAAGCTATTCCGGTGTCGGAGCCGCTTGGTGAACCGCCGAACATCAAAGAAGGTGGCGATGGCGATAGGGAACGCG
AGAATTTGCAGTCGGTGGCTCCCGGCAGTGGCGGTGAGTCGTGA
mRNA sequenceShow/hide mRNA sequence
ATGATCGGCCGCGTCTGCTTTGGGCGTCCCGTTTTTGGCTACAACGCCCACTACGACGTCGAAGATTGGGTCGAGAAGAAATGTGCTACCTGCCTCGATGGGTCTCTAGA
CCCTCCCCCGCATCTCCGCCCCCCGCCACCGATCGAAGCTATTCCGGTGTCGGAGCCGCTTGGTGAACCGCCGAACATCAAAGAAGGTGGCGATGGCGATAGGGAACGCG
AGAATTTGCAGTCGGTGGCTCCCGGCAGTGGCGGTGAGTCGTGA
Protein sequenceShow/hide protein sequence
MIGRVCFGRPVFGYNAHYDVEDWVEKKCATCLDGSLDPPPHLRPPPPIEAIPVSEPLGEPPNIKEGGDGDRERENLQSVAPGSGGES