; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg27592 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg27592
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionexosome complex exonuclease RRP44 homolog A-like
Genome locationCarg_Chr11:8462520..8463664
RNA-Seq ExpressionCarg27592
SyntenyCarg27592
Gene Ontology termsGO:0016075 - rRNA catabolic process (biological process)
GO:0090503 - RNA phosphodiester bond hydrolysis, exonucleolytic (biological process)
GO:0000176 - nuclear exosome (RNase complex) (cellular component)
GO:0000177 - cytoplasmic exosome (RNase complex) (cellular component)
GO:0000175 - 3'-5'-exoribonuclease activity (molecular function)
GO:0003723 - RNA binding (molecular function)
GO:0004519 - endonuclease activity (molecular function)
InterPro domainsIPR012340 - Nucleic acid-binding, OB-fold
IPR033770 - Exosome complex exonuclease RRP44, S1 domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6588646.1 Exosome complex exonuclease RRP44-like A, partial [Cucurbita argyrosperma subsp. sororia]3.1e-5797.41Show/hide
Query:  DLNYRHRNAQMAGRASVELHTLIYFKKRPTDTEARIVKIRSNGFIVFVPKFGIEGPIYLSARGEKQNGEWLVDEQDQKIKRLDGSITYNVLQAVRIHMEV
        +LNYRHRNAQMAGRASVELHTLIYFKKRPTDTEARIVKIRSNGFIVFVPKFGIEGPIYLSARGEKQN EWLVDEQDQKIK+LDGSITYNVLQAVRIHMEV
Subjt:  DLNYRHRNAQMAGRASVELHTLIYFKKRPTDTEARIVKIRSNGFIVFVPKFGIEGPIYLSARGEKQNGEWLVDEQDQKIKRLDGSITYNVLQAVRIHMEV

Query:  VEPQPNRPKLQLKLIT
        VEPQPNRPKLQLKLIT
Subjt:  VEPQPNRPKLQLKLIT

KAG7022442.1 Exosome complex exonuclease RRP44-like A, partial [Cucurbita argyrosperma subsp. argyrosperma]2.1e-66100Show/hide
Query:  MDVHCCKLFPDLNYRHRNAQMAGRASVELHTLIYFKKRPTDTEARIVKIRSNGFIVFVPKFGIEGPIYLSARGEKQNGEWLVDEQDQKIKRLDGSITYNV
        MDVHCCKLFPDLNYRHRNAQMAGRASVELHTLIYFKKRPTDTEARIVKIRSNGFIVFVPKFGIEGPIYLSARGEKQNGEWLVDEQDQKIKRLDGSITYNV
Subjt:  MDVHCCKLFPDLNYRHRNAQMAGRASVELHTLIYFKKRPTDTEARIVKIRSNGFIVFVPKFGIEGPIYLSARGEKQNGEWLVDEQDQKIKRLDGSITYNV

Query:  LQAVRIHMEVVEPQPNRPKLQLKLIT
        LQAVRIHMEVVEPQPNRPKLQLKLIT
Subjt:  LQAVRIHMEVVEPQPNRPKLQLKLIT

XP_022927909.1 exosome complex exonuclease RRP44 homolog A-like [Cucurbita moschata]1.1e-5798.28Show/hide
Query:  DLNYRHRNAQMAGRASVELHTLIYFKKRPTDTEARIVKIRSNGFIVFVPKFGIEGPIYLSARGEKQNGEWLVDEQDQKIKRLDGSITYNVLQAVRIHMEV
        +LNYRHRNAQMAGRASVELHTLIYFKKRPTDTEARIVKIRSNGFIVFVPKFGIEGPI+LSARGEKQNGEWLVDEQDQKIKRLDGSITYNVLQAVRIHMEV
Subjt:  DLNYRHRNAQMAGRASVELHTLIYFKKRPTDTEARIVKIRSNGFIVFVPKFGIEGPIYLSARGEKQNGEWLVDEQDQKIKRLDGSITYNVLQAVRIHMEV

Query:  VEPQPNRPKLQLKLIT
        VEPQPNRPKLQLKLIT
Subjt:  VEPQPNRPKLQLKLIT

XP_022988682.1 exosome complex exonuclease RRP44 homolog A-like [Cucurbita maxima]6.9e-5796.55Show/hide
Query:  DLNYRHRNAQMAGRASVELHTLIYFKKRPTDTEARIVKIRSNGFIVFVPKFGIEGPIYLSARGEKQNGEWLVDEQDQKIKRLDGSITYNVLQAVRIHMEV
        +LNYRHRNAQMAGRASVELHTLIYFKKRPTDTEARIVKIRSNGFIVFVPKFGIEGPIYLSARGEKQNGEWLVDEQDQK+K+LDGSITYNVLQAVRIHMEV
Subjt:  DLNYRHRNAQMAGRASVELHTLIYFKKRPTDTEARIVKIRSNGFIVFVPKFGIEGPIYLSARGEKQNGEWLVDEQDQKIKRLDGSITYNVLQAVRIHMEV

Query:  VEPQPNRPKLQLKLIT
        VEPQPNRPKLQL LIT
Subjt:  VEPQPNRPKLQLKLIT

XP_023530073.1 exosome complex exonuclease RRP44 homolog A-like [Cucurbita pepo subsp. pepo]6.2e-5898.28Show/hide
Query:  DLNYRHRNAQMAGRASVELHTLIYFKKRPTDTEARIVKIRSNGFIVFVPKFGIEGPIYLSARGEKQNGEWLVDEQDQKIKRLDGSITYNVLQAVRIHMEV
        +LNYRHRNAQMAGR+SVELHTLIYFKKRPTDTEARIVKIRSNGFIVFVPKFGIEGPIYLSARGEKQNGEWLVDEQDQKIKRLDGSITYNVLQAVRIHMEV
Subjt:  DLNYRHRNAQMAGRASVELHTLIYFKKRPTDTEARIVKIRSNGFIVFVPKFGIEGPIYLSARGEKQNGEWLVDEQDQKIKRLDGSITYNVLQAVRIHMEV

Query:  VEPQPNRPKLQLKLIT
        VEPQPNRPKLQLKLIT
Subjt:  VEPQPNRPKLQLKLIT

TrEMBL top hitse value%identityAlignment
A0A1S3BZS3 exosome complex exonuclease RRP44 homolog A1.7e-5389.57Show/hide
Query:  DLNYRHRNAQMAGRASVELHTLIYFKKRPTDTEARIVKIRSNGFIVFVPKFGIEGPIYLSARGEKQNGEWLVDEQDQKIKRLDGSITYNVLQAVRIHMEV
        +LNYRHRNAQMAGRASVELHTLIYFKKRPTDTEARIVKIRSNGFIVFVPKFGIEGP+YLS + EKQ+GEW VDEQ+QKIK+LDGSITYN+LQAVRIHMEV
Subjt:  DLNYRHRNAQMAGRASVELHTLIYFKKRPTDTEARIVKIRSNGFIVFVPKFGIEGPIYLSARGEKQNGEWLVDEQDQKIKRLDGSITYNVLQAVRIHMEV

Query:  VEPQPNRPKLQLKLI
        VEPQPNRPKLQL L+
Subjt:  VEPQPNRPKLQLKLI

A0A5A7SKL0 Exosome complex exonuclease RRP44-like protein A1.7e-5389.57Show/hide
Query:  DLNYRHRNAQMAGRASVELHTLIYFKKRPTDTEARIVKIRSNGFIVFVPKFGIEGPIYLSARGEKQNGEWLVDEQDQKIKRLDGSITYNVLQAVRIHMEV
        +LNYRHRNAQMAGRASVELHTLIYFKKRPTDTEARIVKIRSNGFIVFVPKFGIEGP+YLS + EKQ+GEW VDEQ+QKIK+LDGSITYN+LQAVRIHMEV
Subjt:  DLNYRHRNAQMAGRASVELHTLIYFKKRPTDTEARIVKIRSNGFIVFVPKFGIEGPIYLSARGEKQNGEWLVDEQDQKIKRLDGSITYNVLQAVRIHMEV

Query:  VEPQPNRPKLQLKLI
        VEPQPNRPKLQL L+
Subjt:  VEPQPNRPKLQLKLI

A0A6J1EJB8 exosome complex exonuclease RRP44 homolog A-like5.1e-5898.28Show/hide
Query:  DLNYRHRNAQMAGRASVELHTLIYFKKRPTDTEARIVKIRSNGFIVFVPKFGIEGPIYLSARGEKQNGEWLVDEQDQKIKRLDGSITYNVLQAVRIHMEV
        +LNYRHRNAQMAGRASVELHTLIYFKKRPTDTEARIVKIRSNGFIVFVPKFGIEGPI+LSARGEKQNGEWLVDEQDQKIKRLDGSITYNVLQAVRIHMEV
Subjt:  DLNYRHRNAQMAGRASVELHTLIYFKKRPTDTEARIVKIRSNGFIVFVPKFGIEGPIYLSARGEKQNGEWLVDEQDQKIKRLDGSITYNVLQAVRIHMEV

Query:  VEPQPNRPKLQLKLIT
        VEPQPNRPKLQLKLIT
Subjt:  VEPQPNRPKLQLKLIT

A0A6J1GLL6 exosome complex exonuclease RRP44 homolog A-like1.7e-5388.7Show/hide
Query:  DLNYRHRNAQMAGRASVELHTLIYFKKRPTDTEARIVKIRSNGFIVFVPKFGIEGPIYLSARGEKQNGEWLVDEQDQKIKRLDGSITYNVLQAVRIHMEV
        +LNYRHRNAQMAGRASVELHTLIYFKKRPTDTEARIVKIRSNGFIVFVPKFGIEGP+YLS +GEKQ+GEW VDEQ+QKIK+LDGS+ YN+LQAVRIHMEV
Subjt:  DLNYRHRNAQMAGRASVELHTLIYFKKRPTDTEARIVKIRSNGFIVFVPKFGIEGPIYLSARGEKQNGEWLVDEQDQKIKRLDGSITYNVLQAVRIHMEV

Query:  VEPQPNRPKLQLKLI
        VEPQPNRPKLQL L+
Subjt:  VEPQPNRPKLQLKLI

A0A6J1JDQ5 exosome complex exonuclease RRP44 homolog A-like3.3e-5796.55Show/hide
Query:  DLNYRHRNAQMAGRASVELHTLIYFKKRPTDTEARIVKIRSNGFIVFVPKFGIEGPIYLSARGEKQNGEWLVDEQDQKIKRLDGSITYNVLQAVRIHMEV
        +LNYRHRNAQMAGRASVELHTLIYFKKRPTDTEARIVKIRSNGFIVFVPKFGIEGPIYLSARGEKQNGEWLVDEQDQK+K+LDGSITYNVLQAVRIHMEV
Subjt:  DLNYRHRNAQMAGRASVELHTLIYFKKRPTDTEARIVKIRSNGFIVFVPKFGIEGPIYLSARGEKQNGEWLVDEQDQKIKRLDGSITYNVLQAVRIHMEV

Query:  VEPQPNRPKLQLKLIT
        VEPQPNRPKLQL LIT
Subjt:  VEPQPNRPKLQLKLIT

SwissProt top hitse value%identityAlignment
P37202 Exosome complex exonuclease dis33.1e-1233.06Show/hide
Query:  LNYRHRNAQMAGRASVELHTLIYFKKRPTDTEARIVKIRSNGFIVFVPKFGIEGPIYLSARGE--KQNGEWLVDEQDQKIKRLD----GSITYNVLQAVR
        +NYRHR AQMAGRAS+E +     K    + +A ++K+  NGF+VF+ +FG+EG +Y  +     + N E++ DE    I+  D     ++   + Q VR
Subjt:  LNYRHRNAQMAGRASVELHTLIYFKKRPTDTEARIVKIRSNGFIVFVPKFGIEGPIYLSARGE--KQNGEWLVDEQDQKIKRLD----GSITYNVLQAVR

Query:  IHMEVV-EPQPNRPKLQLKLI
        + +  V +    + K+Q+ L+
Subjt:  IHMEVV-EPQPNRPKLQLKLI

Q17632 Probable exosome complex exonuclease RRP442.1e-1635.54Show/hide
Query:  CCKLFPDLNYRHRNAQMAGRASVELHTLIYFKKRPTDTEARIVKIRSNGFIVFVPKFGIEGPIYLSARGEKQNGEWLVDEQDQKIKRLDGSITYNVLQAV
        C K+  ++NYRH+ AQ AGRASV+L+ + YFK +    E  ++ +R+NG  VFVPK+G+E  I L            +D ++  +K ++G +    L+ V
Subjt:  CCKLFPDLNYRHRNAQMAGRASVELHTLIYFKKRPTDTEARIVKIRSNGFIVFVPKFGIEGPIYLSARGEKQNGEWLVDEQDQKIKRLDGSITYNVLQAV

Query:  RIHMEVVEPQPNRPKLQLKLI
         + + V E    RP+++L+LI
Subjt:  RIHMEVVEPQPNRPKLQLKLI

Q9CSH3 Exosome complex exonuclease RRP442.3e-1030.17Show/hide
Query:  DLNYRHRNAQMAGRASVELHTLIYFK-KRPTDTEARIVKIRSNGFIVFVPKFGIEGPIYLSARGEKQNGEWLVDEQDQKIKRLDGSITYNVLQAVRIHME
        +LN+RH+ AQ A RASV  HT ++FK K     EA I+ +R N  +V +PK+G+EG ++   + +K       D++   + R++G++ ++V   V++ + 
Subjt:  DLNYRHRNAQMAGRASVELHTLIYFK-KRPTDTEARIVKIRSNGFIVFVPKFGIEGPIYLSARGEKQNGEWLVDEQDQKIKRLDGSITYNVLQAVRIHME

Query:  VVEPQPNRPKLQLKLI
        +        K+++ L+
Subjt:  VVEPQPNRPKLQLKLI

Q9SHL7 Exosome complex exonuclease RRP44 homolog A1.4e-4775.65Show/hide
Query:  DLNYRHRNAQMAGRASVELHTLIYFKKRPTDTEARIVKIRSNGFIVFVPKFGIEGPIYLSARGEKQNGEWLVDEQDQKIKRLDGSITYNVLQAVRIHMEV
        +LNYRHRNAQMAGRASVEL+ LIYF+ RPTD EAR+VKIRSNGFIVFVPK+GIEGP+YL+ +GEK  G+W VDE+ QKI ++DGS++Y+VLQ V+IHMEV
Subjt:  DLNYRHRNAQMAGRASVELHTLIYFKKRPTDTEARIVKIRSNGFIVFVPKFGIEGPIYLSARGEKQNGEWLVDEQDQKIKRLDGSITYNVLQAVRIHMEV

Query:  VEPQPNRPKLQLKLI
        VEPQPNRPKLQL L+
Subjt:  VEPQPNRPKLQLKLI

Q9Y2L1 Exosome complex exonuclease RRP444.5e-1131.03Show/hide
Query:  DLNYRHRNAQMAGRASVELHTLIYFK-KRPTDTEARIVKIRSNGFIVFVPKFGIEGPIYLSARGEKQNGEWLVDEQDQKIKRLDGSITYNVLQAVRIHME
        +LN+RH+ AQ A RASV  HT ++FK K     EA I+ +R N  +V +PK+G+EG ++   + +K N + + D++   +K  D    ++V   V++ + 
Subjt:  DLNYRHRNAQMAGRASVELHTLIYFK-KRPTDTEARIVKIRSNGFIVFVPKFGIEGPIYLSARGEKQNGEWLVDEQDQKIKRLDGSITYNVLQAVRIHME

Query:  VVEPQPNRPKLQLKLI
        +        K+++ L+
Subjt:  VVEPQPNRPKLQLKLI

Arabidopsis top hitse value%identityAlignment
AT2G17510.1 ribonuclease II family protein9.6e-4975.65Show/hide
Query:  DLNYRHRNAQMAGRASVELHTLIYFKKRPTDTEARIVKIRSNGFIVFVPKFGIEGPIYLSARGEKQNGEWLVDEQDQKIKRLDGSITYNVLQAVRIHMEV
        +LNYRHRNAQMAGRASVEL+ LIYF+ RPTD EAR+VKIRSNGFIVFVPK+GIEGP+YL+ +GEK  G+W VDE+ QKI ++DGS++Y+VLQ V+IHMEV
Subjt:  DLNYRHRNAQMAGRASVELHTLIYFKKRPTDTEARIVKIRSNGFIVFVPKFGIEGPIYLSARGEKQNGEWLVDEQDQKIKRLDGSITYNVLQAVRIHMEV

Query:  VEPQPNRPKLQLKLI
        VEPQPNRPKLQL L+
Subjt:  VEPQPNRPKLQLKLI

AT2G17510.2 ribonuclease II family protein9.6e-4975.65Show/hide
Query:  DLNYRHRNAQMAGRASVELHTLIYFKKRPTDTEARIVKIRSNGFIVFVPKFGIEGPIYLSARGEKQNGEWLVDEQDQKIKRLDGSITYNVLQAVRIHMEV
        +LNYRHRNAQMAGRASVEL+ LIYF+ RPTD EAR+VKIRSNGFIVFVPK+GIEGP+YL+ +GEK  G+W VDE+ QKI ++DGS++Y+VLQ V+IHMEV
Subjt:  DLNYRHRNAQMAGRASVELHTLIYFKKRPTDTEARIVKIRSNGFIVFVPKFGIEGPIYLSARGEKQNGEWLVDEQDQKIKRLDGSITYNVLQAVRIHMEV

Query:  VEPQPNRPKLQLKLI
        VEPQPNRPKLQL L+
Subjt:  VEPQPNRPKLQLKLI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGTTCACTGCTGTAAATTGTTTCCAGACTTGAATTATCGACATAGAAACGCCCAGATGGCTGGCCGGGCTTCAGTAGAGCTTCATACTTTAATTTACTTCAAAAA
ACGGCCTACGGACACGGAGGCCAGAATTGTGAAGATAAGATCAAACGGTTTTATAGTATTTGTTCCCAAATTTGGTATCGAGGGACCAATATACTTGTCAGCAAGAGGTG
AGAAGCAAAATGGAGAATGGTTGGTGGATGAGCAAGACCAGAAGATCAAAAGGTTGGATGGTAGCATAACATACAACGTTCTACAGGCAGTGAGAATTCACATGGAGGTT
GTGGAGCCCCAACCAAATCGACCAAAGCTTCAGCTTAAACTTATTACTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGATGTTCACTGCTGTAAATTGTTTCCAGACTTGAATTATCGACATAGAAACGCCCAGATGGCTGGCCGGGCTTCAGTAGAGCTTCATACTTTAATTTACTTCAAAAA
ACGGCCTACGGACACGGAGGCCAGAATTGTGAAGATAAGATCAAACGGTTTTATAGTATTTGTTCCCAAATTTGGTATCGAGGGACCAATATACTTGTCAGCAAGAGGTG
AGAAGCAAAATGGAGAATGGTTGGTGGATGAGCAAGACCAGAAGATCAAAAGGTTGGATGGTAGCATAACATACAACGTTCTACAGGCAGTGAGAATTCACATGGAGGTT
GTGGAGCCCCAACCAAATCGACCAAAGCTTCAGCTTAAACTTATTACTTAATGTCTCCAAAACCACTTGTGTAAAAGGTAGAGTTCTTTTGTTTTTTTTAAAGCTTGCGA
GTTTACAGAGTTCATGTTGTGAGAGTAGATAGAGCTGCAGCGCTGCTAAAACAGATTGCTGGTAGAAATGTATATTTATTTTTATTATAAATAATTTACCACTAATTTTT
TGAACTCAGATGTGTAATTTGTTTAAAATGTTTCAATTTCTTTTTGATGTGTTCAAGTTTAT
Protein sequenceShow/hide protein sequence
MDVHCCKLFPDLNYRHRNAQMAGRASVELHTLIYFKKRPTDTEARIVKIRSNGFIVFVPKFGIEGPIYLSARGEKQNGEWLVDEQDQKIKRLDGSITYNVLQAVRIHMEV
VEPQPNRPKLQLKLIT