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Carg27610 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg27610
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionProtein YIP
Genome locationCarg_Chr10:7543727..7549631
RNA-Seq ExpressionCarg27610
SyntenyCarg27610
Gene Ontology termsGO:0016192 - vesicle-mediated transport (biological process)
GO:0055085 - transmembrane transport (biological process)
GO:0005794 - Golgi apparatus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0031267 - small GTPase binding (molecular function)
InterPro domainsIPR039765 - Protein Yip5/YIPF1/YIPF2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7023954.1 hypothetical protein SDJN02_14982 [Cucurbita argyrosperma subsp. argyrosperma]2.3e-65100Show/hide
Query:  MMSGGNYTTIDNQNVSGSVPAVPDQGQIAVKFTESNLQTFPPSGTQGKIAGGFQPPRDADDTFSKPISGSDEPPQQAGGWLQTFSISSYKQYFDVDTSDV
        MMSGGNYTTIDNQNVSGSVPAVPDQGQIAVKFTESNLQTFPPSGTQGKIAGGFQPPRDADDTFSKPISGSDEPPQQAGGWLQTFSISSYKQYFDVDTSDV
Subjt:  MMSGGNYTTIDNQNVSGSVPAVPDQGQIAVKFTESNLQTFPPSGTQGKIAGGFQPPRDADDTFSKPISGSDEPPQQAGGWLQTFSISSYKQYFDVDTSDV

Query:  LERIKDSLYPFKGTFNERTADTPDL
        LERIKDSLYPFKGTFNERTADTPDL
Subjt:  LERIKDSLYPFKGTFNERTADTPDL

XP_022961492.1 protein YIPF1 homolog [Cucurbita moschata]2.3e-65100Show/hide
Query:  MMSGGNYTTIDNQNVSGSVPAVPDQGQIAVKFTESNLQTFPPSGTQGKIAGGFQPPRDADDTFSKPISGSDEPPQQAGGWLQTFSISSYKQYFDVDTSDV
        MMSGGNYTTIDNQNVSGSVPAVPDQGQIAVKFTESNLQTFPPSGTQGKIAGGFQPPRDADDTFSKPISGSDEPPQQAGGWLQTFSISSYKQYFDVDTSDV
Subjt:  MMSGGNYTTIDNQNVSGSVPAVPDQGQIAVKFTESNLQTFPPSGTQGKIAGGFQPPRDADDTFSKPISGSDEPPQQAGGWLQTFSISSYKQYFDVDTSDV

Query:  LERIKDSLYPFKGTFNERTADTPDL
        LERIKDSLYPFKGTFNERTADTPDL
Subjt:  LERIKDSLYPFKGTFNERTADTPDL

XP_022968778.1 protein YIPF1 homolog [Cucurbita maxima]6.8e-6599.2Show/hide
Query:  MMSGGNYTTIDNQNVSGSVPAVPDQGQIAVKFTESNLQTFPPSGTQGKIAGGFQPPRDADDTFSKPISGSDEPPQQAGGWLQTFSISSYKQYFDVDTSDV
        MMSGGNYTTIDNQNVSGSVPAVPDQGQIAVKFTESNLQTFPPSGTQGKIAGGFQPPRDADDTFSKPISGSDEPPQQ GGWLQTFSISSYKQYFDVDTSDV
Subjt:  MMSGGNYTTIDNQNVSGSVPAVPDQGQIAVKFTESNLQTFPPSGTQGKIAGGFQPPRDADDTFSKPISGSDEPPQQAGGWLQTFSISSYKQYFDVDTSDV

Query:  LERIKDSLYPFKGTFNERTADTPDL
        LERIKDSLYPFKGTFNERTADTPDL
Subjt:  LERIKDSLYPFKGTFNERTADTPDL

XP_023515448.1 protein YIPF1 homolog [Cucurbita pepo subsp. pepo]2.3e-65100Show/hide
Query:  MMSGGNYTTIDNQNVSGSVPAVPDQGQIAVKFTESNLQTFPPSGTQGKIAGGFQPPRDADDTFSKPISGSDEPPQQAGGWLQTFSISSYKQYFDVDTSDV
        MMSGGNYTTIDNQNVSGSVPAVPDQGQIAVKFTESNLQTFPPSGTQGKIAGGFQPPRDADDTFSKPISGSDEPPQQAGGWLQTFSISSYKQYFDVDTSDV
Subjt:  MMSGGNYTTIDNQNVSGSVPAVPDQGQIAVKFTESNLQTFPPSGTQGKIAGGFQPPRDADDTFSKPISGSDEPPQQAGGWLQTFSISSYKQYFDVDTSDV

Query:  LERIKDSLYPFKGTFNERTADTPDL
        LERIKDSLYPFKGTFNERTADTPDL
Subjt:  LERIKDSLYPFKGTFNERTADTPDL

XP_038877563.1 protein YIPF1 homolog [Benincasa hispida]3.3e-5992.06Show/hide
Query:  MMSGGNYTTIDNQNVSGSVPAVPDQGQIAVKFTESNLQTFPPSGTQGKIAGGFQPPRDADDTFSKPISGSDEPPQQ-AGGWLQTFSISSYKQYFDVDTSD
        MMSGGNYTTIDNQNVSGSVPAVPDQGQI VKFT+SNLQTFPPSGTQGKI+GG QPPRDADDTFSKPISGSDE PQQ  GGW +TFSISSYKQYFDVDTSD
Subjt:  MMSGGNYTTIDNQNVSGSVPAVPDQGQIAVKFTESNLQTFPPSGTQGKIAGGFQPPRDADDTFSKPISGSDEPPQQ-AGGWLQTFSISSYKQYFDVDTSD

Query:  VLERIKDSLYPFKGTFNERTADTPDL
        VLERIKDSLYPF+GTFNERTADTPDL
Subjt:  VLERIKDSLYPFKGTFNERTADTPDL

TrEMBL top hitse value%identityAlignment
A0A0A0LWG0 Protein YIP1.5e-5786.15Show/hide
Query:  MMSGGNYTTIDNQNVSGSVPAVPDQGQIAVKFTESNLQTFPPSGTQGKIAGGFQPPRDADDTFSKPISGSDEPPQQ-----AGGWLQTFSISSYKQYFDV
        MMSGGNYTTIDNQNVSGSVPAVPDQGQ+ VKFT+SNLQTFPPSGTQGKI+GG QPPRDADDTFSKPIS SDE PQQ      GGWL+TF++SSYKQYFDV
Subjt:  MMSGGNYTTIDNQNVSGSVPAVPDQGQIAVKFTESNLQTFPPSGTQGKIAGGFQPPRDADDTFSKPISGSDEPPQQ-----AGGWLQTFSISSYKQYFDV

Query:  DTSDVLERIKDSLYPFKGTFNERTADTPDL
        DTSDVLERIKDSL+PF+GTFNERTADTPDL
Subjt:  DTSDVLERIKDSLYPFKGTFNERTADTPDL

A0A1S3BPN2 Protein YIP8.7e-5888.89Show/hide
Query:  MMSGGNYTTIDNQNVSGSVPAVPDQGQIAVKFTESNLQTFPPSGTQGKIAGGFQPPRDADDTFSKPISGSDEPPQQ-AGGWLQTFSISSYKQYFDVDTSD
        MMSGGNYTTIDNQNVSGSVPAVPDQGQ+ VKFT+SNLQTFPPSGTQGKI+GG QPPRDADDTFSKPISGSDE  QQ  GGWL+TF++SSYKQYFDVDTSD
Subjt:  MMSGGNYTTIDNQNVSGSVPAVPDQGQIAVKFTESNLQTFPPSGTQGKIAGGFQPPRDADDTFSKPISGSDEPPQQ-AGGWLQTFSISSYKQYFDVDTSD

Query:  VLERIKDSLYPFKGTFNERTADTPDL
        VLERIKDSL+PF+GTFNERTADTPDL
Subjt:  VLERIKDSLYPFKGTFNERTADTPDL

A0A6J1HAC1 Protein YIP1.1e-65100Show/hide
Query:  MMSGGNYTTIDNQNVSGSVPAVPDQGQIAVKFTESNLQTFPPSGTQGKIAGGFQPPRDADDTFSKPISGSDEPPQQAGGWLQTFSISSYKQYFDVDTSDV
        MMSGGNYTTIDNQNVSGSVPAVPDQGQIAVKFTESNLQTFPPSGTQGKIAGGFQPPRDADDTFSKPISGSDEPPQQAGGWLQTFSISSYKQYFDVDTSDV
Subjt:  MMSGGNYTTIDNQNVSGSVPAVPDQGQIAVKFTESNLQTFPPSGTQGKIAGGFQPPRDADDTFSKPISGSDEPPQQAGGWLQTFSISSYKQYFDVDTSDV

Query:  LERIKDSLYPFKGTFNERTADTPDL
        LERIKDSLYPFKGTFNERTADTPDL
Subjt:  LERIKDSLYPFKGTFNERTADTPDL

A0A6J1HXI0 Protein YIP1.9e-5789.6Show/hide
Query:  MMSGGNYTTIDNQNVSGSVPAVPDQGQIAVKFTESNLQTFPPSGTQGKIAGGFQPPRDADDTFSKPISGSDEPPQQAGGWLQTFSISSYKQYFDVDTSDV
        MMSGGNYTTIDNQNVSG+VPAVPDQGQI VKF +S+LQTFPPSGTQGKI GG QPPRDADDTFSKPISGSDE PQQ GGWL+TF+ISSYKQYFDVDTSDV
Subjt:  MMSGGNYTTIDNQNVSGSVPAVPDQGQIAVKFTESNLQTFPPSGTQGKIAGGFQPPRDADDTFSKPISGSDEPPQQAGGWLQTFSISSYKQYFDVDTSDV

Query:  LERIKDSLYPFKGTFNERTADTPDL
        LERIKDSL+PF+GTFNERTADTPDL
Subjt:  LERIKDSLYPFKGTFNERTADTPDL

A0A6J1HZ32 Protein YIP3.3e-6599.2Show/hide
Query:  MMSGGNYTTIDNQNVSGSVPAVPDQGQIAVKFTESNLQTFPPSGTQGKIAGGFQPPRDADDTFSKPISGSDEPPQQAGGWLQTFSISSYKQYFDVDTSDV
        MMSGGNYTTIDNQNVSGSVPAVPDQGQIAVKFTESNLQTFPPSGTQGKIAGGFQPPRDADDTFSKPISGSDEPPQQ GGWLQTFSISSYKQYFDVDTSDV
Subjt:  MMSGGNYTTIDNQNVSGSVPAVPDQGQIAVKFTESNLQTFPPSGTQGKIAGGFQPPRDADDTFSKPISGSDEPPQQAGGWLQTFSISSYKQYFDVDTSDV

Query:  LERIKDSLYPFKGTFNERTADTPDL
        LERIKDSLYPFKGTFNERTADTPDL
Subjt:  LERIKDSLYPFKGTFNERTADTPDL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G39805.1 Integral membrane Yip1 family protein3.0e-1033.59Show/hide
Query:  NYTTIDNQNVSGSVPAV--PDQGQIAVKFTESN------LQTFPPSGTQGKIAGGFQPPRDADDTFSKPISGSDEPPQQAGGWLQTFSISSYKQYFDVDT
        ++  + + ++ GSVPAV   D+    V     N      +Q FPP+   G    G+Q       T   P  G  + P  +  W   F++ SY QYFDVDT
Subjt:  NYTTIDNQNVSGSVPAV--PDQGQIAVKFTESN------LQTFPPSGTQGKIAGGFQPPRDADDTFSKPISGSDEPPQQAGGWLQTFSISSYKQYFDVDT

Query:  SDVLERIKDSLYPFKGTFNERTADTPDL
          VL R+  SLYP  G F  +    PDL
Subjt:  SDVLERIKDSLYPFKGTFNERTADTPDL

AT2G39805.2 Integral membrane Yip1 family protein2.5e-0933.33Show/hide
Query:  NYTTIDNQNVSGSVPAV--PDQGQIAVKFTESN------LQTFPPSGTQGKIAGGFQPPRDADDTFSKP-ISGSDEPPQQAGGWLQTFSISSYKQYFDVD
        ++  + + ++ GSVPAV   D+    V     N      +Q FPP+   G    G+Q       T   P + G  + P  +  W   F++ SY QYFDVD
Subjt:  NYTTIDNQNVSGSVPAV--PDQGQIAVKFTESN------LQTFPPSGTQGKIAGGFQPPRDADDTFSKP-ISGSDEPPQQAGGWLQTFSISSYKQYFDVD

Query:  TSDVLERIKDSLYPFKGTFNERTADTPDL
        T  VL R+  SLYP  G F  +    PDL
Subjt:  TSDVLERIKDSLYPFKGTFNERTADTPDL

AT3G05280.1 Integral membrane Yip1 family protein5.2e-4769.6Show/hide
Query:  MMSGGNYTTIDNQNVSGSVPAVPDQGQIAVKFTESNLQTFPPSGTQGKIAGGFQPPRDADDTFSKPISGSDEPPQQAGGWLQTFSISSYKQYFDVDTSDV
        MMSGGNYTTID+Q VSGSVP+VPD G   VKF ESNLQTFPPS TQGKI+GG  PPRDADD+FS   +GS + P Q+GGWL  F++ +YK +FDVDTSDV
Subjt:  MMSGGNYTTIDNQNVSGSVPAVPDQGQIAVKFTESNLQTFPPSGTQGKIAGGFQPPRDADDTFSKPISGSDEPPQQAGGWLQTFSISSYKQYFDVDTSDV

Query:  LERIKDSLYPFKGTFNERTADTPDL
        +ER+K+SL+PF+GTF E+TAD PDL
Subjt:  LERIKDSLYPFKGTFNERTADTPDL

AT5G27490.1 Integral membrane Yip1 family protein4.7e-4868Show/hide
Query:  MMSGGNYTTIDNQNVSGSVPAVPDQGQIAVKFTESNLQTFPPSGTQGKIAGGFQPPRDADDTFSKPISGSDEPPQQAGGWLQTFSISSYKQYFDVDTSDV
        MMSGG+YT ID+Q VSGSVPAVPD G + VKF +SNLQTFPPS TQGKI+GG  PPRDADDTFS+P++G+ + P Q+ GWL  F++ +YK YFDVDTSDV
Subjt:  MMSGGNYTTIDNQNVSGSVPAVPDQGQIAVKFTESNLQTFPPSGTQGKIAGGFQPPRDADDTFSKPISGSDEPPQQAGGWLQTFSISSYKQYFDVDTSDV

Query:  LERIKDSLYPFKGTFNERTADTPDL
        +ER+K+SL+PF+GTF E+TA+ PDL
Subjt:  LERIKDSLYPFKGTFNERTADTPDL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGTCCGGTGGTAACTACACGACTATAGATAACCAAAATGTTTCAGGATCTGTTCCCGCTGTTCCAGATCAGGGACAGATAGCCGTTAAATTCACTGAGTCAAATCT
TCAAACGTTTCCTCCTTCCGGAACTCAAGGAAAGATCGCTGGTGGATTCCAGCCACCTCGTGATGCTGATGATACATTTTCAAAACCTATCTCTGGTTCTGATGAACCCC
CCCAACAGGCTGGTGGCTGGCTTCAGACCTTCTCAATTTCTTCCTACAAACAATATTTTGATGTCGATACTTCAGACGTTCTAGAGAGGATCAAGGATTCGCTTTATCCA
TTTAAAGGAACTTTTAACGAAAGGACAGCCGACACTCCAGATTTGTAA
mRNA sequenceShow/hide mRNA sequence
TGGAGATACTTCTCTGAGAAGGGAGAAGAAGAAGCAAGAATACGCAGAAGATGATGTCCGGTGGTAACTACACGACTATAGATAACCAAAATGTTTCAGGATCTGTTCCC
GCTGTTCCAGATCAGGGACAGATAGCCGTTAAATTCACTGAGTCAAATCTTCAAACGTTTCCTCCTTCCGGAACTCAAGGAAAGATCGCTGGTGGATTCCAGCCACCTCG
TGATGCTGATGATACATTTTCAAAACCTATCTCTGGTTCTGATGAACCCCCCCAACAGGCTGGTGGCTGGCTTCAGACCTTCTCAATTTCTTCCTACAAACAATATTTTG
ATGTCGATACTTCAGACGTTCTAGAGAGGATCAAGGATTCGCTTTATCCATTTAAAGGAACTTTTAACGAAAGGACAGCCGACACTCCAGATTTGTAAGCTCCTTTTTCT
GTAACTATACTAATTTTGTATCCTATCTATTGAGAGAGTCCCACGTCAGCTAATTTAGGGAATGATCATAGGTTTATTAAGTAGGGAATACATTTCTATTGATATGAGGC
CTTTTGGGGAAAGGCCAAAGCAAAGCCATGAGAGCTTATGCTCAAAATGGACAATATCGTACTATTGTGGAGAGTCGTGTTAGATTATAGTCGGAAGGCTTTATGATTAT
AGTATCATTTTCTCTCCAGATACGGACCATTTTGGATATGTACAACCTTGATATTTGTGGCTGCTTCTATTGGAACGTTTGTAACATACATAGCACAAAAGTTACAACAT
AAAGATTGGAACTATGACATAAATTTGGTAACTTGGTCTGCTGGTTTGTTCTATGGCTATGTCACCATTGTTCCTCTTGGACTATATGTAGTCCTCAAGTACTTCTCGGT
GCCTTCTGGCCTTGTTCAGCTCTTATGTCTCTATGGCTACTCTTTATTTGTGTTCATCCCAGCACTGTGTCTCTCTGTTGTTCCTTTGGAAATTTTTCGATGGGTTATTG
CGGGCGTTGCGGGATTCATGTCTGCATCCTTTGTGGCACTCAATCTCCGAGCTCACATAATGTCAGCTGGTGAGAGGTGGGTTTTGATTGTGGCTTGTATCTTCTTGCTG
CAGTTAGCTCTTGCTGTCATTCTCAAACTATATTTGTTCACCGTAACTGTATTAAACTAAACTCCCCGACCCTTGATAAACATGTCGTAGATTACGCACGAGAATTTCTT
TTGGTTTTCAATACTTGTCATGTTTAGTGTTACAGTCATGCTTGTCCAAAGTGTGTTGCTTATGGTCGCATGGTAGATGTTTCAGTCTTTCTT
Protein sequenceShow/hide protein sequence
MMSGGNYTTIDNQNVSGSVPAVPDQGQIAVKFTESNLQTFPPSGTQGKIAGGFQPPRDADDTFSKPISGSDEPPQQAGGWLQTFSISSYKQYFDVDTSDVLERIKDSLYP
FKGTFNERTADTPDL