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Carg27662 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg27662
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionRNA polymerase II transcriptional coactivator KIWI-like
Genome locationCarg_Chr03:2591725..2593043
RNA-Seq ExpressionCarg27662
SyntenyCarg27662
Gene Ontology termsGO:0060261 - positive regulation of transcription initiation from RNA polymerase II promoter (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005667 - transcription factor complex (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003713 - transcription coactivator activity (molecular function)
InterPro domainsIPR003173 - Transcriptional coactivator p15 (PC4), C-terminal
IPR009044 - ssDNA-binding transcriptional regulator
IPR045125 - RNA polymerase II transcriptional coactivator Sub1/Tcp4-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6603408.1 RNA polymerase II transcriptional coactivator KIWI, partial [Cucurbita argyrosperma subsp. sororia]4.8e-3498.7Show/hide
Query:  MSARGKRKDDEDHVSEGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGSS
        MSARGKRKDDEDHVSEGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKG S
Subjt:  MSARGKRKDDEDHVSEGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGSS

KAG7033606.1 RNA polymerase II transcriptional coactivator KIWI [Cucurbita argyrosperma subsp. argyrosperma]1.7e-47100Show/hide
Query:  MSARGKRKDDEDHVSEGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGSSHHRLLFSLRTSPVFRFSCSG
        MSARGKRKDDEDHVSEGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGSSHHRLLFSLRTSPVFRFSCSG
Subjt:  MSARGKRKDDEDHVSEGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGSSHHRLLFSLRTSPVFRFSCSG

XP_022932999.1 RNA polymerase II transcriptional coactivator KIWI-like isoform X1 [Cucurbita moschata]2.4e-3397.4Show/hide
Query:  MSARGKRKDDEDHVSEGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGSS
        MSARGKRKDDEDHV EGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKG S
Subjt:  MSARGKRKDDEDHVSEGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGSS

XP_023543026.1 RNA polymerase II transcriptional coactivator KIWI-like isoform X1 [Cucurbita pepo subsp. pepo]2.4e-3398.67Show/hide
Query:  MSARGKRKDDEDHVSEGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKG
        MSARGKRK+DEDHVSEGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKG
Subjt:  MSARGKRKDDEDHVSEGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKG

XP_023543027.1 RNA polymerase II transcriptional coactivator KIWI-like isoform X2 [Cucurbita pepo subsp. pepo]1.4e-3397.4Show/hide
Query:  MSARGKRKDDEDHVSEGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGSS
        MSARGKRK+DEDHVSEGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKG S
Subjt:  MSARGKRKDDEDHVSEGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGSS

TrEMBL top hitse value%identityAlignment
A0A6J1EXX8 RNA polymerase II transcriptional coactivator KIWI-like isoform X21.5e-3397.37Show/hide
Query:  MSARGKRKDDEDHVSEGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGS
        MSARGKRKDDEDHV EGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKG+
Subjt:  MSARGKRKDDEDHVSEGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGS

A0A6J1EYF6 RNA polymerase II transcriptional coactivator KIWI-like isoform X39.8e-3398.65Show/hide
Query:  MSARGKRKDDEDHVSEGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKK
        MSARGKRKDDEDHV EGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKK
Subjt:  MSARGKRKDDEDHVSEGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKK

A0A6J1EYI2 RNA polymerase II transcriptional coactivator KIWI-like isoform X11.2e-3397.4Show/hide
Query:  MSARGKRKDDEDHVSEGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGSS
        MSARGKRKDDEDHV EGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKG S
Subjt:  MSARGKRKDDEDHVSEGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGSS

A0A6J1HRT2 RNA polymerase II transcriptional coactivator KIWI-like isoform X19.8e-3393.51Show/hide
Query:  MSARGKRKDDEDHVSEGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGSS
        MSARGKRKDDEDH SEGDAPPKKTF+KDS+ETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGK+MPGKKG S
Subjt:  MSARGKRKDDEDHVSEGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGSS

A0A6J1IRG1 RNA polymerase II transcriptional coactivator KIWI-like isoform X13.4e-3394.81Show/hide
Query:  MSARGKRKDDEDHVSEGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGSS
        MSARGKR+DDEDHVSEGDAPPKKTFRKDSDETDEIVVCEISKNR+V+VRNWQGKIVVDIREFYVKDGKQMPGKKG S
Subjt:  MSARGKRKDDEDHVSEGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGSS

SwissProt top hitse value%identityAlignment
O65154 RNA polymerase II transcriptional coactivator KIWI1.4e-2065.06Show/hide
Query:  MSARGKRKDDE----DHVSEGDAPPKKTFR--KDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGSS
        MS+RGKRKD++    D  SE  AP KK  +   DSD++D+IVVC ISKNRRV VRNW GKI +DIREFYVKDGK +PGKKG S
Subjt:  MSARGKRKDDE----DHVSEGDAPPKKTFR--KDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGSS

O65155 RNA polymerase II transcriptional coactivator KELP2.6e-0640Show/hide
Query:  KDDEDHVSEGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGSS
        K++ED    GD    K   K+ D+  ++++C +S  RRV ++ ++GK +V IRE+Y KDGK++P  KG S
Subjt:  KDDEDHVSEGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGSS

Arabidopsis top hitse value%identityAlignment
AT5G09240.1 ssDNA-binding transcriptional regulator9.5e-1248.24Show/hide
Query:  MSARGKRKD------DEDHVSEGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMP--GKKGSS
        MS  GKRKD      D+   SE  APPKK   K +DE ++I +C + KNRRV VRN  G+I + IR+F+VKDG  +P   K+G S
Subjt:  MSARGKRKD------DEDHVSEGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMP--GKKGSS

AT5G09240.2 ssDNA-binding transcriptional regulator9.5e-1248.24Show/hide
Query:  MSARGKRKD------DEDHVSEGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMP--GKKGSS
        MS  GKRKD      D+   SE  APPKK   K +DE ++I +C + KNRRV VRN  G+I + IR+F+VKDG  +P   K+G S
Subjt:  MSARGKRKD------DEDHVSEGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMP--GKKGSS

AT5G09240.3 ssDNA-binding transcriptional regulator5.5e-1243.14Show/hide
Query:  MSARGKRKD------DEDHVSEGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGSSHHRLLFSLRTSPVFRFS
        MS  GKRKD      D+   SE  APPKK   K +DE ++I +C + KNRRV VRN  G+I + IR+F+VKDG  +P         L+  L    + RFS
Subjt:  MSARGKRKD------DEDHVSEGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGSSHHRLLFSLRTSPVFRFS

Query:  CS
         S
Subjt:  CS

AT5G09250.1 ssDNA-binding transcriptional regulator1.0e-2165.06Show/hide
Query:  MSARGKRKDDE----DHVSEGDAPPKKTFR--KDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGSS
        MS+RGKRKD++    D  SE  AP KK  +   DSD++D+IVVC ISKNRRV VRNW GKI +DIREFYVKDGK +PGKKG S
Subjt:  MSARGKRKDDE----DHVSEGDAPPKKTFR--KDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGSS

AT5G09250.2 ssDNA-binding transcriptional regulator1.3e-2164.63Show/hide
Query:  MSARGKRKDDE----DHVSEGDAPPKKTFR--KDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGS
        MS+RGKRKD++    D  SE  AP KK  +   DSD++D+IVVC ISKNRRV VRNW GKI +DIREFYVKDGK +PGKKG+
Subjt:  MSARGKRKDDE----DHVSEGDAPPKKTFR--KDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGCAAGAGGAAAGCGAAAAGACGACGAAGATCATGTATCTGAGGGAGATGCTCCTCCAAAGAAGACATTCAGGAAAGATTCCGATGAAACTGATGAAATCGTTGT
CTGCGAGATTTCAAAGAACCGTAGGGTTATGGTGAGGAACTGGCAAGGAAAGATTGTGGTGGATATTCGGGAGTTTTATGTCAAAGATGGAAAGCAGATGCCTGGAAAGA
AAGGTTCATCTCATCATCGTCTTCTTTTTTCTCTCCGTACCTCTCCGGTTTTTCGTTTTTCTTGTAGTGGATGA
mRNA sequenceShow/hide mRNA sequence
AAAATGACTGTTTATTTATCACACAGGAAATTGTATAGGTTTAATTTGACGTTCGTACCCGATTTCCGTCCTACTCACTTGAGCACACATACTCGGGAAGAAGACCAAAG
GAGGAAGAAATGTCTGCAAGAGGAAAGCGAAAAGACGACGAAGATCATGTATCTGAGGGAGATGCTCCTCCAAAGAAGACATTCAGGAAAGATTCCGATGAAACTGATGA
AATCGTTGTCTGCGAGATTTCAAAGAACCGTAGGGTTATGGTGAGGAACTGGCAAGGAAAGATTGTGGTGGATATTCGGGAGTTTTATGTCAAAGATGGAAAGCAGATGC
CTGGAAAGAAAGGTTCATCTCATCATCGTCTTCTTTTTTCTCTCCGTACCTCTCCGGTTTTTCGTTTTTCTTGTAGTGGATGAATTGATTTTTCGTTTTGGATTTAGAAG
TCGGTTTGCTGTTTTTCTAGGGTTTATGTTTCACTTTGAGTTTTCTGTTGTCTTCGTTTTCAGATTTGTCTTGGTATTTGTTTTGAATTGTCTAATGATGGTCGAGGGAG
AATTTGGTGGTGAAATGGAATTCTAATGTGGGGAACTTTTCTTGCTTCATACTTGTGTTTCACTGTCTACACGATCACTTGGGCTGAACCGATAGTTTTTTTCAGCTCCA
TTTTAGTTGTTGGAGATTCTTTTTGCATCAGATATTGAGATTGTAAAGCGTTACTCCATATTTTTTCTCTCTAGAATTTGATATAGGGGTTTGAGTAATGATGTTTGGAA
ACTGCATTTATGGCTTTATCATAGATGTTTGTTCAAAGTGAAGAGGAAATATTTTTGGATGATCATATATATTCTTATGAACTTCATTTGGTCTACAGGCAATTTTATAA
AATTTACCTTTCTCTGGACTTTTGCTATGACATAATTTAGTGAGGTTCCAATTTTTATGATCCACCAAGAATTTTGATTTGGGGATAGTTTTCTTATCTGGTTCATGTAA
AATAGTTGTTGGGAATATTTAAGGAAGAACGTATGTATAGGGATGAAAGAATAATTTTGAAGGGCTGGGTAGAGGGTTTGAAGAAAAAAAGATGGTGAAGAAGAGACTTG
AGTATGCCCAATTTGGCTGGAAACATACCTTTCTAGTGACTAGACGTCAATTTCACACTAATTGATACAGTATTACGGAAGCCTTAAAGGAAGGTTATACATTAAGAATC
ACATGCTCAATCCTTTGCTATGA
Protein sequenceShow/hide protein sequence
MSARGKRKDDEDHVSEGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGSSHHRLLFSLRTSPVFRFSCSG