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Carg27682 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg27682
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionPentatricopeptide repeat-containing protein
Genome locationCarg_Chr11:4464093..4465462
RNA-Seq ExpressionCarg27682
SyntenyCarg27682
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR002885 - Pentatricopeptide repeat
IPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6588214.1 Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia]4.3e-14100Show/hide
Query:  MIENGVNPDRATYSSLINGHVSQDNMKDAFRFHDEMLQRGL
        MIENGVNPDRATYSSLINGHVSQDNMKDAFRFHDEMLQRGL
Subjt:  MIENGVNPDRATYSSLINGHVSQDNMKDAFRFHDEMLQRGL

KAG7022113.1 Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma]9.6e-3082.76Show/hide
Query:  MIENGVNPDRATYSSLINGHVSQDNMKDAFRFHDEMLQRGLGYFISDPKLGADAFTLMLSLQLLRIEALDILWAIVSCQ--PEYRIA
        MIENGVNPDRATYSSLINGHVSQDNMKDAFRFHDEMLQRGLGYFISDPKLGADAFTLMLSLQLLRIEAL +   ++  +  P  R+A
Subjt:  MIENGVNPDRATYSSLINGHVSQDNMKDAFRFHDEMLQRGLGYFISDPKLGADAFTLMLSLQLLRIEALDILWAIVSCQ--PEYRIA

KAG7022125.1 Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma]1.3e-47100Show/hide
Query:  MIENGVNPDRATYSSLINGHVSQDNMKDAFRFHDEMLQRGLGYFISDPKLGADAFTLMLSLQLLRIEALDILWAIVSCQPEYRIAHISLFVVIRRNQST
        MIENGVNPDRATYSSLINGHVSQDNMKDAFRFHDEMLQRGLGYFISDPKLGADAFTLMLSLQLLRIEALDILWAIVSCQPEYRIAHISLFVVIRRNQST
Subjt:  MIENGVNPDRATYSSLINGHVSQDNMKDAFRFHDEMLQRGLGYFISDPKLGADAFTLMLSLQLLRIEALDILWAIVSCQPEYRIAHISLFVVIRRNQST

XP_022973817.1 pentatricopeptide repeat-containing protein At5g01110 [Cucurbita maxima]4.3e-14100Show/hide
Query:  MIENGVNPDRATYSSLINGHVSQDNMKDAFRFHDEMLQRGL
        MIENGVNPDRATYSSLINGHVSQDNMKDAFRFHDEMLQRGL
Subjt:  MIENGVNPDRATYSSLINGHVSQDNMKDAFRFHDEMLQRGL

XP_023530884.1 pentatricopeptide repeat-containing protein At5g01110 [Cucurbita pepo subsp. pepo]4.3e-14100Show/hide
Query:  MIENGVNPDRATYSSLINGHVSQDNMKDAFRFHDEMLQRGL
        MIENGVNPDRATYSSLINGHVSQDNMKDAFRFHDEMLQRGL
Subjt:  MIENGVNPDRATYSSLINGHVSQDNMKDAFRFHDEMLQRGL

TrEMBL top hitse value%identityAlignment
A0A1S3BNF5 pentatricopeptide repeat-containing protein At5g011104.4e-1290.24Show/hide
Query:  MIENGVNPDRATYSSLINGHVSQDNMKDAFRFHDEMLQRGL
        MIE G+NPDRATYS LINGHVSQDNMK+AFRFHDEMLQRGL
Subjt:  MIENGVNPDRATYSSLINGHVSQDNMKDAFRFHDEMLQRGL

A0A3Q7G2U4 Uncharacterized protein3.4e-1275.51Show/hide
Query:  MIENGVNPDRATYSSLINGHVSQDNMKDAFRFHDEMLQRGLGYFISDPK
        M+E G+NPDR+TY+SLINGHVSQDN+K+AFRFHDEMLQRG   FI D K
Subjt:  MIENGVNPDRATYSSLINGHVSQDNMKDAFRFHDEMLQRGLGYFISDPK

A0A6J1DJZ9 pentatricopeptide repeat-containing protein At5g011108.0e-1495.12Show/hide
Query:  MIENGVNPDRATYSSLINGHVSQDNMKDAFRFHDEMLQRGL
        MIENG+NPDRAT+SSLINGHVSQDNMKDAFRFHDEMLQRGL
Subjt:  MIENGVNPDRATYSSLINGHVSQDNMKDAFRFHDEMLQRGL

A0A6J1F5T7 pentatricopeptide repeat-containing protein At5g011102.1e-14100Show/hide
Query:  MIENGVNPDRATYSSLINGHVSQDNMKDAFRFHDEMLQRGL
        MIENGVNPDRATYSSLINGHVSQDNMKDAFRFHDEMLQRGL
Subjt:  MIENGVNPDRATYSSLINGHVSQDNMKDAFRFHDEMLQRGL

A0A6J1I8K2 pentatricopeptide repeat-containing protein At5g011102.1e-14100Show/hide
Query:  MIENGVNPDRATYSSLINGHVSQDNMKDAFRFHDEMLQRGL
        MIENGVNPDRATYSSLINGHVSQDNMKDAFRFHDEMLQRGL
Subjt:  MIENGVNPDRATYSSLINGHVSQDNMKDAFRFHDEMLQRGL

SwissProt top hitse value%identityAlignment
Q0WVK7 Pentatricopeptide repeat-containing protein At1g05670, mitochondrial4.2e-0447.5Show/hide
Query:  MIENGVNPDRATYSSLINGHVSQDNMKDAFRFHDEMLQRG
        M   G+ PD  T++ LING+    +MKDAFR H+ M+Q G
Subjt:  MIENGVNPDRATYSSLINGHVSQDNMKDAFRFHDEMLQRG

Q9LFC5 Pentatricopeptide repeat-containing protein At5g011104.7e-1175Show/hide
Query:  MIENGVNPDRATYSSLINGHVSQDNMKDAFRFHDEMLQRG
        MIE GVNPDR+TY+ +ING VSQDN+ +AFR HDEMLQRG
Subjt:  MIENGVNPDRATYSSLINGHVSQDNMKDAFRFHDEMLQRG

Q9SV46 Pentatricopeptide repeat-containing protein At3g54980, mitochondrial7.2e-0443.9Show/hide
Query:  MIENGVNPDRATYSSLINGHVSQDNMKDAFRFHDEMLQRGL
        M +N V P+   Y+++I GH  + N+ +AFR HDEML +G+
Subjt:  MIENGVNPDRATYSSLINGHVSQDNMKDAFRFHDEMLQRGL

Arabidopsis top hitse value%identityAlignment
AT1G05670.1 Pentatricopeptide repeat (PPR-like) superfamily protein3.0e-0547.5Show/hide
Query:  MIENGVNPDRATYSSLINGHVSQDNMKDAFRFHDEMLQRG
        M   G+ PD  T++ LING+    +MKDAFR H+ M+Q G
Subjt:  MIENGVNPDRATYSSLINGHVSQDNMKDAFRFHDEMLQRG

AT1G05670.2 Pentatricopeptide repeat (PPR-like) superfamily protein3.0e-0547.5Show/hide
Query:  MIENGVNPDRATYSSLINGHVSQDNMKDAFRFHDEMLQRG
        M   G+ PD  T++ LING+    +MKDAFR H+ M+Q G
Subjt:  MIENGVNPDRATYSSLINGHVSQDNMKDAFRFHDEMLQRG

AT3G54980.1 Pentatricopeptide repeat (PPR) superfamily protein5.1e-0543.9Show/hide
Query:  MIENGVNPDRATYSSLINGHVSQDNMKDAFRFHDEMLQRGL
        M +N V P+   Y+++I GH  + N+ +AFR HDEML +G+
Subjt:  MIENGVNPDRATYSSLINGHVSQDNMKDAFRFHDEMLQRGL

AT5G01110.1 Tetratricopeptide repeat (TPR)-like superfamily protein3.3e-1275Show/hide
Query:  MIENGVNPDRATYSSLINGHVSQDNMKDAFRFHDEMLQRG
        MIE GVNPDR+TY+ +ING VSQDN+ +AFR HDEMLQRG
Subjt:  MIENGVNPDRATYSSLINGHVSQDNMKDAFRFHDEMLQRG

AT5G18390.1 Pentatricopeptide repeat (PPR) superfamily protein8.7e-0550Show/hide
Query:  MIENGVNPDRATYSSLINGHVSQDNMKDAFRFHDEMLQRG
        MI  G+ PD+ TY+ L+NG  S   MK+A  F DEM +RG
Subjt:  MIENGVNPDRATYSSLINGHVSQDNMKDAFRFHDEMLQRG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTGAGAATGGTGTAAATCCTGACAGAGCCACTTATTCTTCTCTGATAAATGGTCACGTCAGCCAAGACAATATGAAGGATGCATTTCGTTTCCACGACGAAATGCT
ACAAAGAGGACTCGGATACTTCATATCTGATCCAAAACTCGGTGCAGATGCTTTTACATTGATGTTGTCTCTTCAATTACTGAGAATTGAGGCATTGGATATCTTGTGGG
CTATTGTCAGCTGCCAACCAGAATATAGGATAGCCCACATTTCACTTTTTGTTGTCATAAGGAGAAACCAGTCAACTTGA
mRNA sequenceShow/hide mRNA sequence
ATGATTGAGAATGGTGTAAATCCTGACAGAGCCACTTATTCTTCTCTGATAAATGGTCACGTCAGCCAAGACAATATGAAGGATGCATTTCGTTTCCACGACGAAATGCT
ACAAAGAGGACTCGGATACTTCATATCTGATCCAAAACTCGGTGCAGATGCTTTTACATTGATGTTGTCTCTTCAATTACTGAGAATTGAGGCATTGGATATCTTGTGGG
CTATTGTCAGCTGCCAACCAGAATATAGGATAGCCCACATTTCACTTTTTGTTGTCATAAGGAGAAACCAGTCAACTTGA
Protein sequenceShow/hide protein sequence
MIENGVNPDRATYSSLINGHVSQDNMKDAFRFHDEMLQRGLGYFISDPKLGADAFTLMLSLQLLRIEALDILWAIVSCQPEYRIAHISLFVVIRRNQST