; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg27687 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg27687
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionProtein LATERAL ROOT PRIMORDIUM 1
Genome locationCarg_Chr11:4497832..4499226
RNA-Seq ExpressionCarg27687
SyntenyCarg27687
Gene Ontology termsGO:0009734 - auxin-activated signaling pathway (biological process)
GO:0009851 - auxin biosynthetic process (biological process)
GO:0045893 - positive regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR006510 - Zinc finger, lateral root primordium type 1
IPR006511 - SHORT INTERNODES, C-terminal
IPR007818 - SHI protein family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6588219.1 Protein LATERAL ROOT PRIMORDIUM 1, partial [Cucurbita argyrosperma subsp. sororia]1.2e-17290.58Show/hide
Query:  SSAVAAARRLPSDSGAFADWVAPPTADDELSLGFNSAAAVPVARMWPSTSSTRPIAGAYGHTAPPPTDMVGLMASGY-----------------------
        +S+VAAARRLPSDSGAFADWVAPPTADDELSLGFNSAAAVPVARMWPS+SSTRPIAGAYGHTAPPPTDMVGLMASGY                       
Subjt:  SSAVAAARRLPSDSGAFADWVAPPTADDELSLGFNSAAAVPVARMWPSTSSTRPIAGAYGHTAPPPTDMVGLMASGY-----------------------

Query:  ------GPRGGDGGGGGGGVQFHGNNFDGFGFLGGGSSLNSGVGTCHDCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLSAAAAAA
              G  GGDGGGGGGGVQFHGNNFDGFGFLGGGSSLNSGVGTCHDCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLSAAAAAA
Subjt:  ------GPRGGDGGGGGGGVQFHGNNFDGFGFLGGGSSLNSGVGTCHDCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLSAAAAAA

Query:  AATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDTCSAADMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGSGGNEYAYQAVVKIGGHVFKGY
        AATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDTCSAADMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGSGGNEYAYQAVVKIGGHVFKGY
Subjt:  AATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDTCSAADMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGSGGNEYAYQAVVKIGGHVFKGY

Query:  LYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGRGGGLAGGSGYGNPIN
        LYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGRGGGLAGGSGYGNPIN
Subjt:  LYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGRGGGLAGGSGYGNPIN

KAG7022130.1 Protein LATERAL ROOT PRIMORDIUM 1, partial [Cucurbita argyrosperma subsp. argyrosperma]4.7e-185100Show/hide
Query:  VFFFLAGDSSAVAAARRLPSDSGAFADWVAPPTADDELSLGFNSAAAVPVARMWPSTSSTRPIAGAYGHTAPPPTDMVGLMASGYGPRGGDGGGGGGGVQ
        VFFFLAGDSSAVAAARRLPSDSGAFADWVAPPTADDELSLGFNSAAAVPVARMWPSTSSTRPIAGAYGHTAPPPTDMVGLMASGYGPRGGDGGGGGGGVQ
Subjt:  VFFFLAGDSSAVAAARRLPSDSGAFADWVAPPTADDELSLGFNSAAAVPVARMWPSTSSTRPIAGAYGHTAPPPTDMVGLMASGYGPRGGDGGGGGGGVQ

Query:  FHGNNFDGFGFLGGGSSLNSGVGTCHDCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLSAAAAAAAATGGTSSGSTSGGKKPRLIA
        FHGNNFDGFGFLGGGSSLNSGVGTCHDCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLSAAAAAAAATGGTSSGSTSGGKKPRLIA
Subjt:  FHGNNFDGFGFLGGGSSLNSGVGTCHDCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLSAAAAAAAATGGTSSGSTSGGKKPRLIA

Query:  SQTTTNSHTSTSNTPTRSFDTCSAADMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGSGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLG
        SQTTTNSHTSTSNTPTRSFDTCSAADMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGSGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLG
Subjt:  SQTTTNSHTSTSNTPTRSFDTCSAADMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGSGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLG

Query:  GGGDGGSTSSPIIDPSDVYGSSAGRGGGLAGGSGYGNPIN
        GGGDGGSTSSPIIDPSDVYGSSAGRGGGLAGGSGYGNPIN
Subjt:  GGGDGGSTSSPIIDPSDVYGSSAGRGGGLAGGSGYGNPIN

XP_022933450.1 protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 [Cucurbita moschata]1.0e-14790.45Show/hide
Query:  MWPSTSSTRPIAGAYGHTAPPPTDMVGLMASGYG--------------------------PRGGDGGGGGGGVQFHGNNFDGFGFLGGGSSLNSGVGTCH
        MWPSTSSTRPIAGAYGHTAPPPTDMVGLMASGYG                           RGGDGGGGGGGVQFHGNNFDGFGFLGGGSSLNSGVGTCH
Subjt:  MWPSTSSTRPIAGAYGHTAPPPTDMVGLMASGYG--------------------------PRGGDGGGGGGGVQFHGNNFDGFGFLGGGSSLNSGVGTCH

Query:  DCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLSAAAAAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDTCSAAD
        DCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLS AAAAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDTCSAAD
Subjt:  DCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLSAAAAAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDTCSAAD

Query:  MSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGSGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGRG
        MSYKRAKKLPEQVRAPAVFKCVRVTAVEGGG+GGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGRG
Subjt:  MSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGSGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGRG

Query:  GGLAGGSGYGNPIN
        GGLAG SGYGNPIN
Subjt:  GGLAGGSGYGNPIN

XP_022974160.1 protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 [Cucurbita maxima]1.1e-14689.56Show/hide
Query:  MWPSTSSTRPIAGAYGHTAPPPTDMVGLMASGYG----------------------------PRGGDGGGGGGGVQFHGNNFDGFGFLGGGSSLNSGVGT
        MWPS+SS+RPIAGAYGHTAPPPTDMVGLMASGYG                              GGDGGGGGGGVQFHGNNFDGFGFLGGGSSLNSGVGT
Subjt:  MWPSTSSTRPIAGAYGHTAPPPTDMVGLMASGYG----------------------------PRGGDGGGGGGGVQFHGNNFDGFGFLGGGSSLNSGVGT

Query:  CHDCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLSAAAAAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDTCSA
        CHDCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLS AAAAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDTCSA
Subjt:  CHDCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLSAAAAAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDTCSA

Query:  ADMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGSGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAG
        ADMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGSGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAG
Subjt:  ADMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGSGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAG

Query:  RGGGLAGGSGYGNPIN
        RGGGLAGGSGYGNPIN
Subjt:  RGGGLAGGSGYGNPIN

XP_023531847.1 protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 [Cucurbita pepo subsp. pepo]4.3e-14689.24Show/hide
Query:  MWPSTSSTRPIAGAYGHTAPPPTDMVGLMASGYG----------------------------PRGGDGGGGGGGVQFHGNNFDGFGFLGGGSSLNSGVGT
        MWPS+SS+RPIAGAYGHTAPPPTDMVGLMASGYG                              GGDGGGGGGGVQFHGNNFDGFGFLGGGSSLNSGVGT
Subjt:  MWPSTSSTRPIAGAYGHTAPPPTDMVGLMASGYG----------------------------PRGGDGGGGGGGVQFHGNNFDGFGFLGGGSSLNSGVGT

Query:  CHDCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLSAAAAAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDTCSA
        CHDCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLS AAAAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDTCSA
Subjt:  CHDCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLSAAAAAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDTCSA

Query:  ADMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGSGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAG
        ADMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGSGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAG
Subjt:  ADMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGSGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAG

Query:  RGGGLAGGSGYGNPIN
        RGGGLAGGSGYGNPI+
Subjt:  RGGGLAGGSGYGNPIN

TrEMBL top hitse value%identityAlignment
A0A5A7UJ85 Protein LATERAL ROOT PRIMORDIUM 11.8e-13776.02Show/hide
Query:  FFLAGDSSAVAAARRLPSDSGAFADWVAPPTA--DDELSLGFNSAAAVPVARMWPSTSSTRPIAGAYGHTAPPPTDMVGLMASGYG--------------
        F  A DS AVAAARRLPSDSGAFADWVAPP+A   DELSLGFNSA+++P  RMWP   S+RP+   Y HT  P  DMVGLMASG+G              
Subjt:  FFLAGDSSAVAAARRLPSDSGAFADWVAPPTA--DDELSLGFNSAAAVPVARMWPSTSSTRPIAGAYGHTAPPPTDMVGLMASGYG--------------

Query:  ------------PRGGDGGGGGGGVQFHGNNFDGFGFLGGGSSLNSGVGTCHDCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLSA
                     RGG G  GGGG+QF+GNN DGFG LGGGSSLNSGVGTCHDCGNQAKKDC+HRRCRSCCKSRGFDC+THVKSTWVPAARRRERQ++ A
Subjt:  ------------PRGGDGGGGGGGVQFHGNNFDGFGFLGGGSSLNSGVGTCHDCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLSA

Query:  AAAAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDTCSAADMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGS-GGNEYAYQAVVKIGG
        A+ AAA  GGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPT SFD  SAADMS K+AKKLPEQ+RAPAVFKCVRVTAVEGG S GGNEYAYQAVVKIGG
Subjt:  AAAAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDTCSAADMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGS-GGNEYAYQAVVKIGG

Query:  HVFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGRGGGLAGGSGYGNPIN
        HVFKGYLYDHGVEAR+GFP +S+LHL   GDGGSTSSP+IDPSDVYGSSA RGGGLAGGSGYGN IN
Subjt:  HVFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGRGGGLAGGSGYGNPIN

A0A6J1EZ30 protein LATERAL ROOT PRIMORDIUM 1-like isoform X21.0e-14589.81Show/hide
Query:  MWPSTSSTRPIAGAYGHTAPPPTDMVGLMASGYG--------------------------PRGGDGGGGGGGVQFHGNNFDGFGFLGGGSSLNSGVGTCH
        MWPSTSSTRPIAGAYGHTAPPPTDMVGLMASGYG                           RGGDGGGGGGGVQFHGNNFDGFGFLGGGSSLNSGVGTCH
Subjt:  MWPSTSSTRPIAGAYGHTAPPPTDMVGLMASGYG--------------------------PRGGDGGGGGGGVQFHGNNFDGFGFLGGGSSLNSGVGTCH

Query:  DCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLSAAAAAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDTCSAAD
        DCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLS AAAAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDTCS  D
Subjt:  DCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLSAAAAAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDTCSAAD

Query:  MSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGSGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGRG
        MSYKRAKKLPEQVRAPAVFKCVRVTAVEGGG+GGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGRG
Subjt:  MSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGSGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGRG

Query:  GGLAGGSGYGNPIN
        GGLAG SGYGNPIN
Subjt:  GGLAGGSGYGNPIN

A0A6J1F4X3 protein LATERAL ROOT PRIMORDIUM 1-like isoform X15.0e-14890.45Show/hide
Query:  MWPSTSSTRPIAGAYGHTAPPPTDMVGLMASGYG--------------------------PRGGDGGGGGGGVQFHGNNFDGFGFLGGGSSLNSGVGTCH
        MWPSTSSTRPIAGAYGHTAPPPTDMVGLMASGYG                           RGGDGGGGGGGVQFHGNNFDGFGFLGGGSSLNSGVGTCH
Subjt:  MWPSTSSTRPIAGAYGHTAPPPTDMVGLMASGYG--------------------------PRGGDGGGGGGGVQFHGNNFDGFGFLGGGSSLNSGVGTCH

Query:  DCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLSAAAAAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDTCSAAD
        DCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLS AAAAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDTCSAAD
Subjt:  DCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLSAAAAAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDTCSAAD

Query:  MSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGSGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGRG
        MSYKRAKKLPEQVRAPAVFKCVRVTAVEGGG+GGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGRG
Subjt:  MSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGSGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGRG

Query:  GGLAGGSGYGNPIN
        GGLAG SGYGNPIN
Subjt:  GGLAGGSGYGNPIN

A0A6J1ID91 protein LATERAL ROOT PRIMORDIUM 1-like isoform X15.5e-14789.56Show/hide
Query:  MWPSTSSTRPIAGAYGHTAPPPTDMVGLMASGYG----------------------------PRGGDGGGGGGGVQFHGNNFDGFGFLGGGSSLNSGVGT
        MWPS+SS+RPIAGAYGHTAPPPTDMVGLMASGYG                              GGDGGGGGGGVQFHGNNFDGFGFLGGGSSLNSGVGT
Subjt:  MWPSTSSTRPIAGAYGHTAPPPTDMVGLMASGYG----------------------------PRGGDGGGGGGGVQFHGNNFDGFGFLGGGSSLNSGVGT

Query:  CHDCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLSAAAAAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDTCSA
        CHDCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLS AAAAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDTCSA
Subjt:  CHDCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLSAAAAAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDTCSA

Query:  ADMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGSGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAG
        ADMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGSGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAG
Subjt:  ADMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGSGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAG

Query:  RGGGLAGGSGYGNPIN
        RGGGLAGGSGYGNPIN
Subjt:  RGGGLAGGSGYGNPIN

A0A6J1IFF1 protein LATERAL ROOT PRIMORDIUM 1-like isoform X21.1e-14488.92Show/hide
Query:  MWPSTSSTRPIAGAYGHTAPPPTDMVGLMASGYG----------------------------PRGGDGGGGGGGVQFHGNNFDGFGFLGGGSSLNSGVGT
        MWPS+SS+RPIAGAYGHTAPPPTDMVGLMASGYG                              GGDGGGGGGGVQFHGNNFDGFGFLGGGSSLNSGVGT
Subjt:  MWPSTSSTRPIAGAYGHTAPPPTDMVGLMASGYG----------------------------PRGGDGGGGGGGVQFHGNNFDGFGFLGGGSSLNSGVGT

Query:  CHDCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLSAAAAAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDTCSA
        CHDCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLS AAAAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDTCS 
Subjt:  CHDCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLSAAAAAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDTCSA

Query:  ADMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGSGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAG
         DMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGSGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAG
Subjt:  ADMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGSGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAG

Query:  RGGGLAGGSGYGNPIN
        RGGGLAGGSGYGNPIN
Subjt:  RGGGLAGGSGYGNPIN

SwissProt top hitse value%identityAlignment
O65517 Protein SHI RELATED SEQUENCE 22.8e-3142.4Show/hide
Query:  TCHDCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLSAAAAAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDTCS
        +C DCGNQAKKDC H RCR+CCKSRGFDC+THV+STW+P ARRRERQ     + +    G  S G+  GG          T    +S+S  P+ S     
Subjt:  TCHDCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLSAAAAAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDTCS

Query:  AADMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGSGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSA
         A +    A   P +V + A+F+CV+++ V+ GG G  +YAYQ  V IGGH+FKG LYD G E+          ++ GG  G          SD   SSA
Subjt:  AADMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGSGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSA

Query:  GRGGGLAGGSGYGNPIN
        G GGG       G+P N
Subjt:  GRGGGLAGGSGYGNPIN

Q94CK9 Protein LATERAL ROOT PRIMORDIUM 18.4e-6060.54Show/hide
Query:  GGSSLNSGVGTCHDCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLSAAAAAAAATGGTSSGSTSGGKKPRLIAS----QTTTNSHT
        G  S  SG  TC DCGNQAKK+C  RRCR+CCKSRGFDC+THVKSTWV AARRRERQV+      A  T G+S  ++SG KKPR++ S    Q    SHT
Subjt:  GGSSLNSGVGTCHDCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLSAAAAAAAATGGTSSGSTSGGKKPRLIAS----QTTTNSHT

Query:  STSNTPTRSFDTCSAADMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGSGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGG---DGG
        STSNTP +SF+T S+        +  P QVRA AVFKCVRVTAVE    G +EYAYQAVVKIGGHVFKG+LYD G+E +EGFP +SDLHLGG     +G 
Subjt:  STSNTPTRSFDTCSAADMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGSGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGG---DGG

Query:  STSSPIIDPSD-VYGSSAGRGGG
        S S+PI+DP + VYG   G GGG
Subjt:  STSSPIIDPSD-VYGSSAGRGGG

Q9LQZ5 Protein SHI RELATED SEQUENCE 52.5e-2743.48Show/hide
Query:  GGGSSLNSGVGTCHDCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLSAAAAAAAATGGTSSGSTSGGKKPRLIASQTTTNSH----
        GG +    G   C DCGNQAKKDC H RCR+CCKSRGF C THVKSTWVPAA+RRER     A  A+      SS  T   K+ R  +     +      
Subjt:  GGGSSLNSGVGTCHDCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLSAAAAAAAATGGTSSGSTSGGKKPRLIASQTTTNSH----

Query:  ---TSTSNTPTRSFDTCSAADMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGSGGNEYAYQAVVKIGGHVFKGYLYDHGVEARE
           ++ +NT   + ++ S  ++S    + LP +V +PA+F+CVRV+++E        YAYQ  V IGGH+FKG LYD G E ++
Subjt:  ---TSTSNTPTRSFDTCSAADMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGSGGNEYAYQAVVKIGGHVFKGYLYDHGVEARE

Q9SD40 Protein SHI RELATED SEQUENCE 11.9e-2739.01Show/hide
Query:  GGSSLNSGVGTCHDCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLSAAAAAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSN
        GGS   SG  +C DCGNQAKKDC+H RCR+CCKSRGF+C+THV+STWVPAA+RRERQ   A                    + +L   ++    H     
Subjt:  GGSSLNSGVGTCHDCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLSAAAAAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSN

Query:  TPTRSFDTCSAADMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGSGGNEYAYQAVVKIGGHVFKGYLYD--HGVEAREGFPMLSDLHLGGGGDGGSTSSP
          + S         S       P +V + AVF+CVRV++VE    G  E+AYQ  V IGGH+FKG LYD   G     G+ +++      GG GG+    
Subjt:  TPTRSFDTCSAADMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGSGGNEYAYQAVVKIGGHVFKGYLYD--HGVEAREGFPMLSDLHLGGGGDGGSTSSP

Query:  IIDPSDVYGSSAGRGGGLAGGSG
        +I    V  ++A       GG G
Subjt:  IIDPSDVYGSSAGRGGGLAGGSG

Q9XGX0 Protein SHORT INTERNODES6.5e-2840.95Show/hide
Query:  SSLNSGVGTCHDCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLSAAAAAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTP
        S   SG  +C DCGNQ+KKDC+H RCR+CCKSRG DC THVKSTWVPAA+RRERQ   +        GG+        ++   I +++T+ ++T   +  
Subjt:  SSLNSGVGTCHDCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLSAAAAAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTP

Query:  TRSFDTCSAADMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGSGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSD-LHLGGGGDGGSTSSPIID
        T   +               P +V + AVF+CVRV++V+       EYAY+  V IGGHVFKG LYD G   R      S  L+L   G   S+SSP + 
Subjt:  TRSFDTCSAADMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGSGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSD-LHLGGGGDGGSTSSPIID

Query:  PSD-VYGSSA
         ++ V GS++
Subjt:  PSD-VYGSSA

Arabidopsis top hitse value%identityAlignment
AT4G36260.1 Lateral root primordium (LRP) protein-related2.0e-3242.4Show/hide
Query:  TCHDCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLSAAAAAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDTCS
        +C DCGNQAKKDC H RCR+CCKSRGFDC+THV+STW+P ARRRERQ     + +    G  S G+  GG          T    +S+S  P+ S     
Subjt:  TCHDCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLSAAAAAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDTCS

Query:  AADMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGSGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSA
         A +    A   P +V + A+F+CV+++ V+ GG G  +YAYQ  V IGGH+FKG LYD G E+          ++ GG  G          SD   SSA
Subjt:  AADMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGSGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSA

Query:  GRGGGLAGGSGYGNPIN
        G GGG       G+P N
Subjt:  GRGGGLAGGSGYGNPIN

AT5G12330.1 Lateral root primordium (LRP) protein-related6.0e-6160.54Show/hide
Query:  GGSSLNSGVGTCHDCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLSAAAAAAAATGGTSSGSTSGGKKPRLIAS----QTTTNSHT
        G  S  SG  TC DCGNQAKK+C  RRCR+CCKSRGFDC+THVKSTWV AARRRERQV+      A  T G+S  ++SG KKPR++ S    Q    SHT
Subjt:  GGSSLNSGVGTCHDCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLSAAAAAAAATGGTSSGSTSGGKKPRLIAS----QTTTNSHT

Query:  STSNTPTRSFDTCSAADMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGSGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGG---DGG
        STSNTP +SF+T S+        +  P QVRA AVFKCVRVTAVE    G +EYAYQAVVKIGGHVFKG+LYD G+E +EGFP +SDLHLGG     +G 
Subjt:  STSNTPTRSFDTCSAADMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGSGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGG---DGG

Query:  STSSPIIDPSD-VYGSSAGRGGG
        S S+PI+DP + VYG   G GGG
Subjt:  STSSPIIDPSD-VYGSSAGRGGG

AT5G12330.2 Lateral root primordium (LRP) protein-related6.0e-6160.54Show/hide
Query:  GGSSLNSGVGTCHDCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLSAAAAAAAATGGTSSGSTSGGKKPRLIAS----QTTTNSHT
        G  S  SG  TC DCGNQAKK+C  RRCR+CCKSRGFDC+THVKSTWV AARRRERQV+      A  T G+S  ++SG KKPR++ S    Q    SHT
Subjt:  GGSSLNSGVGTCHDCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLSAAAAAAAATGGTSSGSTSGGKKPRLIAS----QTTTNSHT

Query:  STSNTPTRSFDTCSAADMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGSGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGG---DGG
        STSNTP +SF+T S+        +  P QVRA AVFKCVRVTAVE    G +EYAYQAVVKIGGHVFKG+LYD G+E +EGFP +SDLHLGG     +G 
Subjt:  STSNTPTRSFDTCSAADMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGSGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGG---DGG

Query:  STSSPIIDPSD-VYGSSAGRGGG
        S S+PI+DP + VYG   G GGG
Subjt:  STSSPIIDPSD-VYGSSAGRGGG

AT5G12330.4 Lateral root primordium (LRP) protein-related7.3e-5944.25Show/hide
Query:  GDSSAVAAARR--LP-SDSGAFADWVA----PPTADDELSLGFN-----------SAAAVPVARMWPSTSSTRPIAGAYGHTAPPPTDMVG-----LMAS
        G   +VA  RR  LP SDSGAF DW A    P  A ++LSLGFN           SA+       WP  SS R   G     A     MVG     L+A 
Subjt:  GDSSAVAAARR--LP-SDSGAFADWVA----PPTADDELSLGFN-----------SAAAVPVARMWPSTSSTRPIAGAYGHTAPPPTDMVG-----LMAS

Query:  GYGPRGGDGGGGG--------------------------------GGVQFHGNN----------------FDGFGFLGGGSSLN--------SGVGTCHD
         Y  +      G                                   + F GNN                F        G+S N        SG  TC D
Subjt:  GYGPRGGDGGGGG--------------------------------GGVQFHGNN----------------FDGFGFLGGGSSLN--------SGVGTCHD

Query:  CGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLSAAAAAAAATGGTSSGSTSGGKKPRLIAS----QTTTNSHTSTSNTPTRSFDTCS
        CGNQAKK+C  RRCR+CCKSRGFDC+THVKSTWV AARRRERQV+      A  T G+S  ++SG KKPR++ S    Q    SHTSTSNTP +SF+T S
Subjt:  CGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLSAAAAAAAATGGTSSGSTSGGKKPRLIAS----QTTTNSHTSTSNTPTRSFDTCS

Query:  AADMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGSGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGG---DGGSTSSPIIDPSD-VY
        +        +  P QVRA AVFKCVRVTAVE    G +EYAYQAVVKIGGHVFKG+LYD G+E +EGFP +SDLHLGG     +G S S+PI+DP + VY
Subjt:  AADMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGSGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGG---DGGSTSSPIIDPSD-VY

Query:  GSSAGRGGG
        G   G GGG
Subjt:  GSSAGRGGG

AT5G66350.1 Lateral root primordium (LRP) protein-related4.6e-2940.95Show/hide
Query:  SSLNSGVGTCHDCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLSAAAAAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTP
        S   SG  +C DCGNQ+KKDC+H RCR+CCKSRG DC THVKSTWVPAA+RRERQ   +        GG+        ++   I +++T+ ++T   +  
Subjt:  SSLNSGVGTCHDCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLSAAAAAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTP

Query:  TRSFDTCSAADMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGSGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSD-LHLGGGGDGGSTSSPIID
        T   +               P +V + AVF+CVRV++V+       EYAY+  V IGGHVFKG LYD G   R      S  L+L   G   S+SSP + 
Subjt:  TRSFDTCSAADMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGSGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSD-LHLGGGGDGGSTSSPIID

Query:  PSD-VYGSSA
         ++ V GS++
Subjt:  PSD-VYGSSA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GTTTTTTTTTTTCTCGCCGGAGATTCATCAGCTGTGGCTGCCGCACGCCGCCTTCCTTCCGATTCCGGTGCCTTTGCCGATTGGGTGGCTCCTCCCACCGCCGATGATGA
ACTTTCTCTCGGTTTCAATTCTGCTGCTGCCGTACCGGTTGCTAGGATGTGGCCCTCCACCTCCTCCACCAGACCTATTGCCGGTGCGTATGGCCACACGGCACCACCGC
CGACGGACATGGTGGGTCTCATGGCCTCTGGCTATGGACCGCGCGGCGGCGATGGCGGCGGCGGAGGTGGTGGGGTTCAATTTCATGGGAATAATTTTGATGGGTTTGGG
TTTTTGGGAGGTGGGTCGAGCTTGAATTCCGGCGTTGGGACTTGCCATGACTGTGGGAACCAAGCTAAGAAAGACTGCAACCACCGCCGGTGCCGGAGTTGCTGTAAAAG
CCGAGGTTTTGACTGTGCTACTCACGTGAAGAGCACGTGGGTTCCAGCAGCCCGTCGGAGAGAACGCCAAGTACTGAGCGCCGCCGCAGCCGCCGCCGCCGCCACTGGTG
GGACTTCATCGGGATCCACCTCCGGCGGGAAGAAGCCGAGGCTCATTGCATCACAAACAACCACCAATTCTCACACTTCCACTTCCAATACTCCAACACGAAGCTTCGAC
ACTTGCTCAGCTGCAGATATGAGTTATAAAAGGGCGAAAAAGCTACCGGAACAAGTACGAGCGCCGGCAGTGTTCAAGTGCGTCCGGGTGACGGCGGTGGAGGGTGGCGG
TAGTGGGGGGAATGAATATGCATATCAAGCCGTGGTGAAGATCGGCGGCCATGTTTTCAAAGGCTATTTATACGACCATGGAGTGGAGGCTAGAGAAGGGTTTCCAATGT
TGTCGGATTTGCATCTGGGAGGAGGCGGAGATGGCGGTTCGACGTCGTCACCGATCATCGATCCTAGTGATGTTTATGGAAGCTCCGCCGGGCGCGGTGGAGGATTGGCT
GGGGGTTCCGGCTATGGTAATCCAATAAATTGA
mRNA sequenceShow/hide mRNA sequence
GTTTTTTTTTTTCTCGCCGGAGATTCATCAGCTGTGGCTGCCGCACGCCGCCTTCCTTCCGATTCCGGTGCCTTTGCCGATTGGGTGGCTCCTCCCACCGCCGATGATGA
ACTTTCTCTCGGTTTCAATTCTGCTGCTGCCGTACCGGTTGCTAGGATGTGGCCCTCCACCTCCTCCACCAGACCTATTGCCGGTGCGTATGGCCACACGGCACCACCGC
CGACGGACATGGTGGGTCTCATGGCCTCTGGCTATGGACCGCGCGGCGGCGATGGCGGCGGCGGAGGTGGTGGGGTTCAATTTCATGGGAATAATTTTGATGGGTTTGGG
TTTTTGGGAGGTGGGTCGAGCTTGAATTCCGGCGTTGGGACTTGCCATGACTGTGGGAACCAAGCTAAGAAAGACTGCAACCACCGCCGGTGCCGGAGTTGCTGTAAAAG
CCGAGGTTTTGACTGTGCTACTCACGTGAAGAGCACGTGGGTTCCAGCAGCCCGTCGGAGAGAACGCCAAGTACTGAGCGCCGCCGCAGCCGCCGCCGCCGCCACTGGTG
GGACTTCATCGGGATCCACCTCCGGCGGGAAGAAGCCGAGGCTCATTGCATCACAAACAACCACCAATTCTCACACTTCCACTTCCAATACTCCAACACGAAGCTTCGAC
ACTTGCTCAGCTGCAGATATGAGTTATAAAAGGGCGAAAAAGCTACCGGAACAAGTACGAGCGCCGGCAGTGTTCAAGTGCGTCCGGGTGACGGCGGTGGAGGGTGGCGG
TAGTGGGGGGAATGAATATGCATATCAAGCCGTGGTGAAGATCGGCGGCCATGTTTTCAAAGGCTATTTATACGACCATGGAGTGGAGGCTAGAGAAGGGTTTCCAATGT
TGTCGGATTTGCATCTGGGAGGAGGCGGAGATGGCGGTTCGACGTCGTCACCGATCATCGATCCTAGTGATGTTTATGGAAGCTCCGCCGGGCGCGGTGGAGGATTGGCT
GGGGGTTCCGGCTATGGTAATCCAATAAATTGA
Protein sequenceShow/hide protein sequence
VFFFLAGDSSAVAAARRLPSDSGAFADWVAPPTADDELSLGFNSAAAVPVARMWPSTSSTRPIAGAYGHTAPPPTDMVGLMASGYGPRGGDGGGGGGGVQFHGNNFDGFG
FLGGGSSLNSGVGTCHDCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLSAAAAAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFD
TCSAADMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGSGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGRGGGLA
GGSGYGNPIN