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Carg27703 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg27703
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description40S ribosomal protein S12
Genome locationCarg_Chr17:7152796..7153831
RNA-Seq ExpressionCarg27703
SyntenyCarg27703
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR000530 - Ribosomal protein S12e
IPR004038 - Ribosomal protein L7Ae/L30e/S12e/Gadd45
IPR029064 - 50S ribosomal protein L30e-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7014176.1 40S ribosomal protein S12 [Cucurbita argyrosperma subsp. argyrosperma]1.3e-28100Show/hide
Query:  MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGKIAKPARLC
        MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGKIAKPARLC
Subjt:  MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGKIAKPARLC

XP_004135873.1 40S ribosomal protein S12 [Cucumis sativus]2.8e-2396.83Show/hide
Query:  MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGK
        MSADEVAVVAEAPAPALGEPMDIETALQ+VLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLG+
Subjt:  MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGK

XP_008461174.1 PREDICTED: 40S ribosomal protein S12 [Cucumis melo]2.8e-2396.83Show/hide
Query:  MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGK
        MSADEVAVVAEAPAPALGEPMDIETALQ+VLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLG+
Subjt:  MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGK

XP_022954225.1 40S ribosomal protein S12-like [Cucurbita moschata]1.6e-2398.41Show/hide
Query:  MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGK
        MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLG+
Subjt:  MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGK

XP_038896811.1 40S ribosomal protein S12-like [Benincasa hispida]4.8e-2396.83Show/hide
Query:  MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGK
        MSADEVAVVAEAP PALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLG+
Subjt:  MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGK

TrEMBL top hitse value%identityAlignment
A0A0A0KA08 40S ribosomal protein S121.4e-2396.83Show/hide
Query:  MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGK
        MSADEVAVVAEAPAPALGEPMDIETALQ+VLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLG+
Subjt:  MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGK

A0A1S3CDM3 40S ribosomal protein S121.4e-2396.83Show/hide
Query:  MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGK
        MSADEVAVVAEAPAPALGEPMDIETALQ+VLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLG+
Subjt:  MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGK

A0A5A7UX10 40S ribosomal protein S121.4e-2396.83Show/hide
Query:  MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGK
        MSADEVAVVAEAPAPALGEPMDIETALQ+VLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLG+
Subjt:  MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGK

A0A6J1GQC3 40S ribosomal protein S128.0e-2498.41Show/hide
Query:  MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGK
        MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLG+
Subjt:  MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGK

A0A6J1JWC7 40S ribosomal protein S122.3e-2396.83Show/hide
Query:  MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGK
        MSADEV VVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLG+
Subjt:  MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGK

SwissProt top hitse value%identityAlignment
P80455 40S ribosomal protein S125.0e-0749.15Show/hide
Query:  EVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGK
        +V V   + AP L   MDI TALQ VL+KSL   GLV G+H++ KA++K  A LC+L +
Subjt:  EVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGK

Q76I81 40S ribosomal protein S121.1e-0656.52Show/hide
Query:  ALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVL
        A G  MD+ TALQ VL+ +L H GL RG+ E+AKA++K  A LCVL
Subjt:  ALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVL

Q9S9P1 40S ribosomal protein S12-13.1e-0955.22Show/hide
Query:  MSADEVAVVAEAP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGK
        MS DE A V   P      A+ E MD+ TAL+L LRK+ A+GG+VRGLHE AK IEK  AQL VL +
Subjt:  MSADEVAVVAEAP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGK

Q9SKZ3 40S ribosomal protein S12-21.7e-1055.22Show/hide
Query:  MSADEVAVVAEAP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGK
        MS DE       P    A  + E MD+ TAL+L +RKS A+GG+VRGLHESAK IEK  AQLCVL +
Subjt:  MSADEVAVVAEAP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGK

Q9XHS0 40S ribosomal protein S128.5e-1568.97Show/hide
Query:  VAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGK
        V    EAP P LGEPMD+ TALQLV++KS AH GLV+GL E+AK+IEKHAAQLCVL +
Subjt:  VAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGK

Arabidopsis top hitse value%identityAlignment
AT1G15930.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein2.2e-1055.22Show/hide
Query:  MSADEVAVVAEAP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGK
        MS DE A V   P      A+ E MD+ TAL+L LRK+ A+GG+VRGLHE AK IEK  AQL VL +
Subjt:  MSADEVAVVAEAP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGK

AT1G15930.2 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein2.2e-1055.22Show/hide
Query:  MSADEVAVVAEAP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGK
        MS DE A V   P      A+ E MD+ TAL+L LRK+ A+GG+VRGLHE AK IEK  AQL VL +
Subjt:  MSADEVAVVAEAP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGK

AT2G32060.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein1.2e-1155.22Show/hide
Query:  MSADEVAVVAEAP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGK
        MS DE       P    A  + E MD+ TAL+L +RKS A+GG+VRGLHESAK IEK  AQLCVL +
Subjt:  MSADEVAVVAEAP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGK

AT2G32060.2 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein1.2e-1155.22Show/hide
Query:  MSADEVAVVAEAP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGK
        MS DE       P    A  + E MD+ TAL+L +RKS A+GG+VRGLHESAK IEK  AQLCVL +
Subjt:  MSADEVAVVAEAP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGK

AT2G32060.3 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein1.2e-1155.22Show/hide
Query:  MSADEVAVVAEAP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGK
        MS DE       P    A  + E MD+ TAL+L +RKS A+GG+VRGLHESAK IEK  AQLCVL +
Subjt:  MSADEVAVVAEAP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAGCTGATGAAGTTGCAGTTGTGGCTGAGGCTCCGGCCCCAGCTCTAGGTGAGCCAATGGACATTGAGACTGCTTTGCAACTTGTTCTTAGAAAATCATTGGCTCA
CGGCGGGCTTGTTCGAGGCCTCCATGAGAGTGCTAAAGCTATTGAGAAGCATGCTGCTCAGCTCTGTGTCTTGGGAAAGATTGCAAAACCAGCCAGACTATGTTAA
mRNA sequenceShow/hide mRNA sequence
CCTAATCTTCTCTACGAACATCCTCTCTCAGTCCTGCCGCCGCCGCAATTTCTCAATTCTCTGTGTTTTTCTGCAAAAGAAGGAGAAACAACTTCTAATCAAGAAGAAAG
ATGTCAGCTGATGAAGTTGCAGTTGTGGCTGAGGCTCCGGCCCCAGCTCTAGGTGAGCCAATGGACATTGAGACTGCTTTGCAACTTGTTCTTAGAAAATCATTGGCTCA
CGGCGGGCTTGTTCGAGGCCTCCATGAGAGTGCTAAAGCTATTGAGAAGCATGCTGCTCAGCTCTGTGTCTTGGGAAAGATTGCAAAACCAGCCAGACTATGTTAA
Protein sequenceShow/hide protein sequence
MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGKIAKPARLC