CuGenDBv2

Gene ID	Carg27831
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	PAP_fibrillin domain-containing protein
Genome location	Carg_Chr14:9125251..9126583
RNA-Seq Expression	Carg27831
Synteny	Carg27831
Gene Ontology terms	NA
InterPro domains	IPR006843 - Plastid lipid-associated protein/fibrillin conserved domain IPR039633 - Plastid-lipid-associated protein

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7018203.1 putative plastid-lipid-associated protein 10, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]

1.7e-87

100

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Query:  MDLSFVSPVYPSIQKRAFSGRNRFCTVRREEPCRRMFQCLATVVSQTSQTYNYGLETKKNDLLVAVQETQRGLVASSDQRCAIEDALVNVETYNMGLPID
        MDLSFVSPVYPSIQKRAFSGRNRFCTVRREEPCRRMFQCLATVVSQTSQTYNYGLETKKNDLLVAVQETQRGLVASSDQRCAIEDALVNVETYNMGLPID
Subjt:  MDLSFVSPVYPSIQKRAFSGRNRFCTVRREEPCRRMFQCLATVVSQTSQTYNYGLETKKNDLLVAVQETQRGLVASSDQRCAIEDALVNVETYNMGLPID

Query:  LMKLDGTWRLQYTSAPDVLILLEAAARLPFFQASKIQITLLIEYLKAKTLFEIRITLRARSIMSSLNDSC
        LMKLDGTWRLQYTSAPDVLILLEAAARLPFFQASKIQITLLIEYLKAKTLFEIRITLRARSIMSSLNDSC
Subjt:  LMKLDGTWRLQYTSAPDVLILLEAAARLPFFQASKIQITLLIEYLKAKTLFEIRITLRARSIMSSLNDSC

XP_022956189.1 probable plastid-lipid-associated protein 10, chloroplastic [Cucurbita moschata]

6.9e-68

97.79

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Query:  MDLSFVSPVYPSIQKRAFSGRNRFCTVRREEPCRRMFQCLATVVSQTSQTYNYGLETKKNDLLVAVQETQRGLVASSDQRCAIEDALVNVETYNMGLPID
        MDLSFVSPVYPSIQKRAFSGRNRFCTVRREEPCRRMFQCLATVVSQTSQTYNYGLETKKNDLLVAVQETQRGLVASSDQRCAIEDALVNVETYNMGLPID
Subjt:  MDLSFVSPVYPSIQKRAFSGRNRFCTVRREEPCRRMFQCLATVVSQTSQTYNYGLETKKNDLLVAVQETQRGLVASSDQRCAIEDALVNVETYNMGLPID

Query:  LMKLDGTWRLQYTSAPDVLILLEAAARLPFFQASKI
        LMKLDGTWRLQYTSAPDVLILLEAAARLPFFQ  +I
Subjt:  LMKLDGTWRLQYTSAPDVLILLEAAARLPFFQASKI

XP_023527018.1 probable plastid-lipid-associated protein 10, chloroplastic isoform X1 [Cucurbita pepo subsp. pepo]

4.9e-66

95.59

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Query:  MDLSFVSPVYPSIQKRAFSGRNRFCTVRREEPCRRMFQCLATVVSQTSQTYNYGLETKKNDLLVAVQETQRGLVASSDQRCAIEDALVNVETYNMGLPID
        MDL FVSPVYPSIQKRA SG NRFCTVRREEPCRRMFQCLATVVSQTSQTYNYGLETKKNDLLVAVQETQRGLVASSDQRCAIEDALVNVETYNMGLPID
Subjt:  MDLSFVSPVYPSIQKRAFSGRNRFCTVRREEPCRRMFQCLATVVSQTSQTYNYGLETKKNDLLVAVQETQRGLVASSDQRCAIEDALVNVETYNMGLPID

Query:  LMKLDGTWRLQYTSAPDVLILLEAAARLPFFQASKI
        LMKLDGTWRLQYTSAPDVLILLEAAARLPFFQ  +I
Subjt:  LMKLDGTWRLQYTSAPDVLILLEAAARLPFFQASKI

XP_023527019.1 probable plastid-lipid-associated protein 10, chloroplastic isoform X2 [Cucurbita pepo subsp. pepo]

4.9e-66

95.59

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Query:  MDLSFVSPVYPSIQKRAFSGRNRFCTVRREEPCRRMFQCLATVVSQTSQTYNYGLETKKNDLLVAVQETQRGLVASSDQRCAIEDALVNVETYNMGLPID
        MDL FVSPVYPSIQKRA SG NRFCTVRREEPCRRMFQCLATVVSQTSQTYNYGLETKKNDLLVAVQETQRGLVASSDQRCAIEDALVNVETYNMGLPID
Subjt:  MDLSFVSPVYPSIQKRAFSGRNRFCTVRREEPCRRMFQCLATVVSQTSQTYNYGLETKKNDLLVAVQETQRGLVASSDQRCAIEDALVNVETYNMGLPID

Query:  LMKLDGTWRLQYTSAPDVLILLEAAARLPFFQASKI
        LMKLDGTWRLQYTSAPDVLILLEAAARLPFFQ  +I
Subjt:  LMKLDGTWRLQYTSAPDVLILLEAAARLPFFQASKI

XP_038897398.1 probable plastid-lipid-associated protein 10, chloroplastic [Benincasa hispida]

1.3e-58

86.03

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Query:  MDLSFVSPVYPSIQKRAFSGRNRFCTVRREEPCRRMFQCLATVVSQTSQTYNYGLETKKNDLLVAVQETQRGLVASSDQRCAIEDALVNVETYNMGLPID
        MDL FVSP+YPS QK+AFSG +RFC VRREE  RRMFQCLATV +QT+QTYNYGLETKKN+LLVAVQETQRGLVASSDQRC IE+ALVNVE YNMGLPID
Subjt:  MDLSFVSPVYPSIQKRAFSGRNRFCTVRREEPCRRMFQCLATVVSQTSQTYNYGLETKKNDLLVAVQETQRGLVASSDQRCAIEDALVNVETYNMGLPID

Query:  LMKLDGTWRLQYTSAPDVLILLEAAARLPFFQASKI
        LMKLDGTWRLQYTSAPDVLILLEAAARLPFFQ  +I
Subjt:  LMKLDGTWRLQYTSAPDVLILLEAAARLPFFQASKI

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L8Y5 PAP_fibrillin domain-containing protein

3.4e-57

83.82

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Query:  MDLSFVSPVYPSIQKRAFSGRNRFCTVRREEPCRRMFQCLATVVSQTSQTYNYGLETKKNDLLVAVQETQRGLVASSDQRCAIEDALVNVETYNMGLPID
        MDL FVSP+Y S QK+AF+G N FC VRRE+ CRR FQCLATV SQT+QTYNYGLETKKNDLLVAVQETQRGLVASSDQRC IE+ALVNVE Y+MGLPID
Subjt:  MDLSFVSPVYPSIQKRAFSGRNRFCTVRREEPCRRMFQCLATVVSQTSQTYNYGLETKKNDLLVAVQETQRGLVASSDQRCAIEDALVNVETYNMGLPID

Query:  LMKLDGTWRLQYTSAPDVLILLEAAARLPFFQASKI
        LMKLDGTWRLQYTSAPDVLILLEAA RLPFFQ  +I
Subjt:  LMKLDGTWRLQYTSAPDVLILLEAAARLPFFQASKI

A0A1S3CN36 probable plastid-lipid-associated protein 10, chloroplastic isoform X1

1.0e-56

83.09

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Query:  MDLSFVSPVYPSIQKRAFSGRNRFCTVRREEPCRRMFQCLATVVSQTSQTYNYGLETKKNDLLVAVQETQRGLVASSDQRCAIEDALVNVETYNMGLPID
        MDL FVSP+Y S QK+AF+G N FC V RE+ CR+MFQCLATV SQT+QTY YGLETKKNDLLVAVQETQRGLVASSDQRC IE+ALVNVE Y+MGLPID
Subjt:  MDLSFVSPVYPSIQKRAFSGRNRFCTVRREEPCRRMFQCLATVVSQTSQTYNYGLETKKNDLLVAVQETQRGLVASSDQRCAIEDALVNVETYNMGLPID

Query:  LMKLDGTWRLQYTSAPDVLILLEAAARLPFFQASKI
        LMKLDGTWRLQYTSAPDVLILLEAAARLPFFQ  +I
Subjt:  LMKLDGTWRLQYTSAPDVLILLEAAARLPFFQASKI

A0A1S3CNH6 probable plastid-lipid-associated protein 10, chloroplastic isoform X2

1.0e-56

83.09

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Query:  MDLSFVSPVYPSIQKRAFSGRNRFCTVRREEPCRRMFQCLATVVSQTSQTYNYGLETKKNDLLVAVQETQRGLVASSDQRCAIEDALVNVETYNMGLPID
        MDL FVSP+Y S QK+AF+G N FC V RE+ CR+MFQCLATV SQT+QTY YGLETKKNDLLVAVQETQRGLVASSDQRC IE+ALVNVE Y+MGLPID
Subjt:  MDLSFVSPVYPSIQKRAFSGRNRFCTVRREEPCRRMFQCLATVVSQTSQTYNYGLETKKNDLLVAVQETQRGLVASSDQRCAIEDALVNVETYNMGLPID

Query:  LMKLDGTWRLQYTSAPDVLILLEAAARLPFFQASKI
        LMKLDGTWRLQYTSAPDVLILLEAAARLPFFQ  +I
Subjt:  LMKLDGTWRLQYTSAPDVLILLEAAARLPFFQASKI

A0A5D3DBT1 Putative plastid-lipid-associated protein 10

1.0e-56

83.09

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Query:  MDLSFVSPVYPSIQKRAFSGRNRFCTVRREEPCRRMFQCLATVVSQTSQTYNYGLETKKNDLLVAVQETQRGLVASSDQRCAIEDALVNVETYNMGLPID
        MDL FVSP+Y S QK+AF+G N FC V RE+ CR+MFQCLATV SQT+QTY YGLETKKNDLLVAVQETQRGLVASSDQRC IE+ALVNVE Y+MGLPID
Subjt:  MDLSFVSPVYPSIQKRAFSGRNRFCTVRREEPCRRMFQCLATVVSQTSQTYNYGLETKKNDLLVAVQETQRGLVASSDQRCAIEDALVNVETYNMGLPID

Query:  LMKLDGTWRLQYTSAPDVLILLEAAARLPFFQASKI
        LMKLDGTWRLQYTSAPDVLILLEAAARLPFFQ  +I
Subjt:  LMKLDGTWRLQYTSAPDVLILLEAAARLPFFQASKI

A0A6J1GYC1 probable plastid-lipid-associated protein 10, chloroplastic

3.3e-68

97.79

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Query:  MDLSFVSPVYPSIQKRAFSGRNRFCTVRREEPCRRMFQCLATVVSQTSQTYNYGLETKKNDLLVAVQETQRGLVASSDQRCAIEDALVNVETYNMGLPID
        MDLSFVSPVYPSIQKRAFSGRNRFCTVRREEPCRRMFQCLATVVSQTSQTYNYGLETKKNDLLVAVQETQRGLVASSDQRCAIEDALVNVETYNMGLPID
Subjt:  MDLSFVSPVYPSIQKRAFSGRNRFCTVRREEPCRRMFQCLATVVSQTSQTYNYGLETKKNDLLVAVQETQRGLVASSDQRCAIEDALVNVETYNMGLPID

Query:  LMKLDGTWRLQYTSAPDVLILLEAAARLPFFQASKI
        LMKLDGTWRLQYTSAPDVLILLEAAARLPFFQ  +I
Subjt:  LMKLDGTWRLQYTSAPDVLILLEAAARLPFFQASKI

SwissProt top hits

e value

%identity

Alignment

Q8W4F1 Probable plastid-lipid-associated protein 10, chloroplastic

3.4e-25

59.26

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Query:  RRMFQCLATVVS-QTSQTY----NYGLETKKNDLLVAVQETQRGLVASSDQRCAIEDALVNVETYNMGLPIDLMKLDGTWRLQYTSAPDVLILLEAAARL
        R+ F C   V S +TS          LE KK+DLL AVQ+TQRGL A+SDQR  IE+ALV VE +N G  ID +KLDGTWRLQYTSAPDV++L EAA+RL
Subjt:  RRMFQCLATVVS-QTSQTY----NYGLETKKNDLLVAVQETQRGLVASSDQRCAIEDALVNVETYNMGLPIDLMKLDGTWRLQYTSAPDVLILLEAAARL

Query:  PFFQASKI
        PFFQ  ++
Subjt:  PFFQASKI

Arabidopsis top hits

e value

%identity

Alignment

AT2G46910.1 Plastid-lipid associated protein PAP / fibrillin family protein

2.4e-26

59.26

Show/hide

Query:  RRMFQCLATVVS-QTSQTY----NYGLETKKNDLLVAVQETQRGLVASSDQRCAIEDALVNVETYNMGLPIDLMKLDGTWRLQYTSAPDVLILLEAAARL
        R+ F C   V S +TS          LE KK+DLL AVQ+TQRGL A+SDQR  IE+ALV VE +N G  ID +KLDGTWRLQYTSAPDV++L EAA+RL
Subjt:  RRMFQCLATVVS-QTSQTY----NYGLETKKNDLLVAVQETQRGLVASSDQRCAIEDALVNVETYNMGLPIDLMKLDGTWRLQYTSAPDVLILLEAAARL

Query:  PFFQASKI
        PFFQ  ++
Subjt:  PFFQASKI

Sequences

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CDS sequence

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ATGGACTTGTCGTTCGTCTCCCCAGTGTATCCTTCGATCCAAAAGAGAGCTTTCAGTGGACGTAACCGATTTTGCACGGTGCGTAGGGAAGAGCCTTGTAGAAGAATGTT
TCAATGTTTGGCAACCGTTGTTAGCCAAACATCTCAGACATATAATTACGGGTTGGAAACCAAAAAGAACGATCTTCTGGTTGCCGTTCAAGAAACACAACGGGGCCTCG
TCGCATCATCTGATCAACGTTGTGCCATTGAGGACGCTCTGGTCAATGTAGAAACGTATAACATGGGTCTTCCTATTGACCTGATGAAGTTGGATGGCACATGGCGGCTG
CAGTATACTTCTGCTCCTGATGTTCTTATTCTCCTAGAAGCTGCAGCCAGGCTTCCTTTCTTTCAGGCGAGTAAGATTCAGATTACCTTGTTGATCGAATATCTCAAGGC
AAAAACATTGTTTGAGATTCGAATCACTCTACGAGCAAGATCGATCATGTCTAGCTTGAATGATTCTTGTTGA

mRNA sequence

Show/hide mRNA sequence

ATAATCCACCACCAAGTATAGATTGGGCTAATCCAACCCGGACTCCAATCGGAAGTCTGTAAAGGTTATGCACCAATGCGGTGACGGGATTCAGAATTAGCCCCTGGATA
TCATCGTCTTCCAAACCCGACCAACGAATCCGGTTGAGCAGTAATCTCGTCGTCAGAGATGGACTTGTCGTTCGTCTCCCCAGTGTATCCTTCGATCCAAAAGAGAGCTT
TCAGTGGACGTAACCGATTTTGCACGGTGCGTAGGGAAGAGCCTTGTAGAAGAATGTTTCAATGTTTGGCAACCGTTGTTAGCCAAACATCTCAGACATATAATTACGGG
TTGGAAACCAAAAAGAACGATCTTCTGGTTGCCGTTCAAGAAACACAACGGGGCCTCGTCGCATCATCTGATCAACGTTGTGCCATTGAGGACGCTCTGGTCAATGTAGA
AACGTATAACATGGGTCTTCCTATTGACCTGATGAAGTTGGATGGCACATGGCGGCTGCAGTATACTTCTGCTCCTGATGTTCTTATTCTCCTAGAAGCTGCAGCCAGGC
TTCCTTTCTTTCAGGCGAGTAAGATTCAGATTACCTTGTTGATCGAATATCTCAAGGCAAAAACATTGTTTGAGATTCGAATCACTCTACGAGCAAGATCGATCATGTCT
AGCTTGAATGATTCTTGTTGA

Protein sequence

Show/hide protein sequence

MDLSFVSPVYPSIQKRAFSGRNRFCTVRREEPCRRMFQCLATVVSQTSQTYNYGLETKKNDLLVAVQETQRGLVASSDQRCAIEDALVNVETYNMGLPIDLMKLDGTWRL
QYTSAPDVLILLEAAARLPFFQASKIQITLLIEYLKAKTLFEIRITLRARSIMSSLNDSC

Carg27831 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome