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Carg27849 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg27849
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptiontranscription factor PRE6-like
Genome locationCarg_Chr05:8104422..8105539
RNA-Seq ExpressionCarg27849
SyntenyCarg27849
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0009416 - response to light stimulus (biological process)
GO:0040008 - regulation of growth (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR011598 - Myc-type, basic helix-loop-helix (bHLH) domain
IPR036638 - Helix-loop-helix DNA-binding domain superfamily
IPR044293 - Transcription factor PRE


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004146747.1 transcription factor PRE6 [Cucumis sativus]1.6e-3187.5Show/hide
Query:  MSSRRSSRSRNSSGAQ--ISDDQISDLVSKLQRLIPEIRNTR-SHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM
        MSSRRSSRSRNS+ A   ISDDQI+DLVSKLQRLIPE+RN R SHK SAS+VLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEA IIRSLFM
Subjt:  MSSRRSSRSRNSSGAQ--ISDDQISDLVSKLQRLIPEIRNTR-SHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM

XP_008465587.1 PREDICTED: transcription factor PRE6-like [Cucumis melo]4.3e-3288.54Show/hide
Query:  MSSRRSSRSRNSSGAQ--ISDDQISDLVSKLQRLIPEIRNTR-SHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM
        MSSRRSSRSRNSS +   ISDDQI+DLVSKLQRLIPE+RN R SHKVSAS+VLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLF+
Subjt:  MSSRRSSRSRNSSGAQ--ISDDQISDLVSKLQRLIPEIRNTR-SHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM

XP_022946595.1 transcription factor PRE6-like [Cucurbita moschata]1.4e-38100Show/hide
Query:  MSSRRSSRSRNSSGAQISDDQISDLVSKLQRLIPEIRNTRSHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM
        MSSRRSSRSRNSSGAQISDDQISDLVSKLQRLIPEIRNTRSHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM
Subjt:  MSSRRSSRSRNSSGAQISDDQISDLVSKLQRLIPEIRNTRSHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM

XP_023546056.1 transcription factor PRE6-like [Cucurbita pepo subsp. pepo]3.1e-3898.92Show/hide
Query:  MSSRRSSRSRNSSGAQISDDQISDLVSKLQRLIPEIRNTRSHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM
        MSSRRSSRSRN+SGAQISDDQISDLVSKLQRLIPEIRNTRSHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM
Subjt:  MSSRRSSRSRNSSGAQISDDQISDLVSKLQRLIPEIRNTRSHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM

XP_038886241.1 transcription factor PRE6-like [Benincasa hispida]7.9e-3493.68Show/hide
Query:  MSSRRSSRSRNSSGAQ-ISDDQISDLVSKLQRLIPEIRNTR-SHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM
        MSSRRSSRSRNSSGA  ISDDQISDLVSKLQRLIPE+RN R SHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLA+TENDSAEAAIIRSLFM
Subjt:  MSSRRSSRSRNSSGAQ-ISDDQISDLVSKLQRLIPEIRNTR-SHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM

TrEMBL top hitse value%identityAlignment
A0A0A0KDL6 BHLH domain-containing protein8.0e-3287.5Show/hide
Query:  MSSRRSSRSRNSSGAQ--ISDDQISDLVSKLQRLIPEIRNTR-SHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM
        MSSRRSSRSRNS+ A   ISDDQI+DLVSKLQRLIPE+RN R SHK SAS+VLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEA IIRSLFM
Subjt:  MSSRRSSRSRNSSGAQ--ISDDQISDLVSKLQRLIPEIRNTR-SHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM

A0A1S3CPL2 transcription factor PRE6-like2.1e-3288.54Show/hide
Query:  MSSRRSSRSRNSSGAQ--ISDDQISDLVSKLQRLIPEIRNTR-SHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM
        MSSRRSSRSRNSS +   ISDDQI+DLVSKLQRLIPE+RN R SHKVSAS+VLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLF+
Subjt:  MSSRRSSRSRNSSGAQ--ISDDQISDLVSKLQRLIPEIRNTR-SHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM

A0A5D3BPI2 Transcription factor PRE6-like2.1e-3288.54Show/hide
Query:  MSSRRSSRSRNSSGAQ--ISDDQISDLVSKLQRLIPEIRNTR-SHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM
        MSSRRSSRSRNSS +   ISDDQI+DLVSKLQRLIPE+RN R SHKVSAS+VLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLF+
Subjt:  MSSRRSSRSRNSSGAQ--ISDDQISDLVSKLQRLIPEIRNTR-SHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM

A0A6J1G4C0 transcription factor PRE6-like6.7e-39100Show/hide
Query:  MSSRRSSRSRNSSGAQISDDQISDLVSKLQRLIPEIRNTRSHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM
        MSSRRSSRSRNSSGAQISDDQISDLVSKLQRLIPEIRNTRSHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM
Subjt:  MSSRRSSRSRNSSGAQISDDQISDLVSKLQRLIPEIRNTRSHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM

A0A6J1KGK3 transcription factor PRE6-like6.7e-39100Show/hide
Query:  MSSRRSSRSRNSSGAQISDDQISDLVSKLQRLIPEIRNTRSHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM
        MSSRRSSRSRNSSGAQISDDQISDLVSKLQRLIPEIRNTRSHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM
Subjt:  MSSRRSSRSRNSSGAQISDDQISDLVSKLQRLIPEIRNTRSHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM

SwissProt top hitse value%identityAlignment
B8APB5 Transcription factor ILI67.7e-2467.74Show/hide
Query:  MSSRRSSRSRNSSGAQISDDQISDLVSKLQRLIPEIRNTRSHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM
        MSSRR SRSR S  ++I+D+QISDLVSKLQ L+PE R   + +V +S+VLQETCNYIR+LH+EVDDLSERLS+LLA ++  SA+AAIIRSL M
Subjt:  MSSRRSSRSRNSSGAQISDDQISDLVSKLQRLIPEIRNTRSHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM

Q0DUR2 Transcription factor ILI67.7e-2467.74Show/hide
Query:  MSSRRSSRSRNSSGAQISDDQISDLVSKLQRLIPEIRNTRSHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM
        MSSRR SRSR S  ++I+D+QISDLVSKLQ L+PE R   + +V +S+VLQETCNYIR+LH+EVDDLSERLS+LLA ++  SA+AAIIRSL M
Subjt:  MSSRRSSRSRNSSGAQISDDQISDLVSKLQRLIPEIRNTRSHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM

Q8GW32 Transcription factor PRE61.0e-3182.42Show/hide
Query:  MSSRRSSRSRNSSGAQISDDQISDLVSKLQRLIPEIRNTRSHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSL
        MSSRRSSRSR S  ++ISDDQISDLVSKLQ LIPE+R  RS KVSASKVLQETCNYIRNLHREVDDLS+RLS+LLA+T+++SAEAAIIRSL
Subjt:  MSSRRSSRSRNSSGAQISDDQISDLVSKLQRLIPEIRNTRSHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSL

Q9CA64 Transcription factor PRE35.0e-2369.89Show/hide
Query:  MSSRRSSRSRNSSG-AQISDDQISDLVSKLQRLIPEIRNT-RSHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSL
        MS RR SRSR SSG ++IS+DQI+DL+ KLQ+L+PE+R++ RS KVSA++VLQ+TCNYIRNLHREVDDLSERLS+LLA   +D+A+AA+IRSL
Subjt:  MSSRRSSRSRNSSG-AQISDDQISDLVSKLQRLIPEIRNT-RSHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSL

Q9LJX1 Transcription factor PRE58.5e-2367.02Show/hide
Query:  MSSRRSSRSRNSSGAQISDDQISDLVSKLQRLIPEI-RNTRSHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM
        MS+RRS ++ N+S  +ISDDQ+ DLVSKL++ +PEI    RS KVSASKVLQETCNYIR LHREVD+LS+RLSQLL + + DS EAA+IRSL M
Subjt:  MSSRRSSRSRNSSGAQISDDQISDLVSKLQRLIPEI-RNTRSHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM

Arabidopsis top hitse value%identityAlignment
AT1G26945.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein7.1e-3382.42Show/hide
Query:  MSSRRSSRSRNSSGAQISDDQISDLVSKLQRLIPEIRNTRSHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSL
        MSSRRSSRSR S  ++ISDDQISDLVSKLQ LIPE+R  RS KVSASKVLQETCNYIRNLHREVDDLS+RLS+LLA+T+++SAEAAIIRSL
Subjt:  MSSRRSSRSRNSSGAQISDDQISDLVSKLQRLIPEIRNTRSHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSL

AT1G74500.1 activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 13.5e-2469.89Show/hide
Query:  MSSRRSSRSRNSSG-AQISDDQISDLVSKLQRLIPEIRNT-RSHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSL
        MS RR SRSR SSG ++IS+DQI+DL+ KLQ+L+PE+R++ RS KVSA++VLQ+TCNYIRNLHREVDDLSERLS+LLA   +D+A+AA+IRSL
Subjt:  MSSRRSSRSRNSSG-AQISDDQISDLVSKLQRLIPEIRNT-RSHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSL

AT3G28857.1 basic helix-loop-helix (bHLH) DNA-binding family protein6.0e-2467.02Show/hide
Query:  MSSRRSSRSRNSSGAQISDDQISDLVSKLQRLIPEI-RNTRSHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM
        MS+RRS ++ N+S  +ISDDQ+ DLVSKL++ +PEI    RS KVSASKVLQETCNYIR LHREVD+LS+RLSQLL + + DS EAA+IRSL M
Subjt:  MSSRRSSRSRNSSGAQISDDQISDLVSKLQRLIPEI-RNTRSHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM

AT3G47710.1 BANQUO 36.7e-2366.3Show/hide
Query:  SRRSSRSRNSSGAQISDDQISDLVSKLQRLIPEI-RNTRSHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM
        S R SRSR +  + I+D+QI+DLV +L RL+PE+  N RS KVSAS+VLQETC+YIRNL +EVDDLSERLSQLL +T  DSA+AA+IRSL M
Subjt:  SRRSSRSRNSSGAQISDDQISDLVSKLQRLIPEI-RNTRSHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM

AT5G39860.1 basic helix-loop-helix (bHLH) DNA-binding family protein1.0e-2367.02Show/hide
Query:  MSSRRSSRSRNSSGAQISDDQISDLVSKLQRLIPEI-RNTRSHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM
        MS+RRS +S  SS  +ISD+Q+ DLVSKL++++PEI +  RS K SASKVLQETCNYIRNL+REVD+LSERLSQLL + + DS EAA+IRSL M
Subjt:  MSSRRSSRSRNSSGAQISDDQISDLVSKLQRLIPEI-RNTRSHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTAGCAGAAGATCCTCTCGTTCCAGAAACTCCTCAGGAGCTCAAATCTCTGACGACCAAATCAGTGATCTTGTTTCCAAGTTGCAGCGCCTCATCCCTGAGATTCG
TAATACTCGTTCCCATAAGGTATCGGCTTCAAAGGTGCTGCAAGAAACATGCAACTACATAAGGAACTTACATAGGGAAGTGGATGATTTAAGTGAGCGATTGTCACAGC
TTTTAGCAGCAACAGAAAACGACAGCGCTGAGGCAGCGATTATTAGGAGTTTATTCATGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCTAGCAGAAGATCCTCTCGTTCCAGAAACTCCTCAGGAGCTCAAATCTCTGACGACCAAATCAGTGATCTTGTTTCCAAGTTGCAGCGCCTCATCCCTGAGATTCG
TAATACTCGTTCCCATAAGGTATCGGCTTCAAAGGTGCTGCAAGAAACATGCAACTACATAAGGAACTTACATAGGGAAGTGGATGATTTAAGTGAGCGATTGTCACAGC
TTTTAGCAGCAACAGAAAACGACAGCGCTGAGGCAGCGATTATTAGGAGTTTATTCATGTAA
Protein sequenceShow/hide protein sequence
MSSRRSSRSRNSSGAQISDDQISDLVSKLQRLIPEIRNTRSHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM