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Carg27889 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg27889
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionNF-kappa-B-activating protein-like isoform X2
Genome locationCarg_Chr10:9335166..9337300
RNA-Seq ExpressionCarg27889
SyntenyCarg27889
Gene Ontology termsGO:0016853 - isomerase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6590461.1 hypothetical protein SDJN03_15884, partial [Cucurbita argyrosperma subsp. sororia]2.5e-1592.45Show/hide
Query:  QRNSFLSREKDNGTRRSAVSGKKILLKLDKSKEDKAEENRRNELLKFLNSSFD
        Q + FLSREKDNGTRRSAVSGKKILLKLDKSKED+AEENRRNELLKFLNSSFD
Subjt:  QRNSFLSREKDNGTRRSAVSGKKILLKLDKSKEDKAEENRRNELLKFLNSSFD

KAG7023995.1 hypothetical protein SDJN02_15023, partial [Cucurbita argyrosperma subsp. argyrosperma]4.1e-34100Show/hide
Query:  MASRKEATLSKGSLGGQNGGRVFGRPDLSQRNSFLSREKDNGTRRSAVSGKKILLKLDKSKEDKAEENRRNELLKFLNSSFD
        MASRKEATLSKGSLGGQNGGRVFGRPDLSQRNSFLSREKDNGTRRSAVSGKKILLKLDKSKEDKAEENRRNELLKFLNSSFD
Subjt:  MASRKEATLSKGSLGGQNGGRVFGRPDLSQRNSFLSREKDNGTRRSAVSGKKILLKLDKSKEDKAEENRRNELLKFLNSSFD

XP_008450603.1 PREDICTED: peptidyl-prolyl cis-trans isomerase G [Cucumis melo]1.6e-1488.68Show/hide
Query:  QRNSFLSREKDNGTRRSAVSGKKILLKLDKSKEDKAEENRRNELLKFLNSSFD
        Q + FL+REKD+GTRRSAVSGKKILLKLDKSKEDKAEEN+RNELLKFLNSSFD
Subjt:  QRNSFLSREKDNGTRRSAVSGKKILLKLDKSKEDKAEENRRNELLKFLNSSFD

XP_022136184.1 serine/arginine-rich splicing factor 11 [Momordica charantia]6.1e-1486.79Show/hide
Query:  QRNSFLSREKDNGTRRSAVSGKKILLKLDKSKEDKAEENRRNELLKFLNSSFD
        Q + FL+REKD+G RRSAVSGKKILLKLDKSKEDKAEEN+RNELLKFLNSSFD
Subjt:  QRNSFLSREKDNGTRRSAVSGKKILLKLDKSKEDKAEENRRNELLKFLNSSFD

XP_038879353.1 NKAP family protein [Benincasa hispida]1.6e-1488.68Show/hide
Query:  QRNSFLSREKDNGTRRSAVSGKKILLKLDKSKEDKAEENRRNELLKFLNSSFD
        Q + FL+REKD+GTRRSAVSGKKILLKLDKSKEDKAEEN+RNELLKFLNSSFD
Subjt:  QRNSFLSREKDNGTRRSAVSGKKILLKLDKSKEDKAEENRRNELLKFLNSSFD

TrEMBL top hitse value%identityAlignment
A0A0A0LVZ3 Uncharacterized protein3.9e-1486.79Show/hide
Query:  QRNSFLSREKDNGTRRSAVSGKKILLKLDKSKEDKAEENRRNELLKFLNSSFD
        Q + FL+REKD+GTRRSAVSGKKILLKLDKSKEDKAEE +RNELLKFLNSSFD
Subjt:  QRNSFLSREKDNGTRRSAVSGKKILLKLDKSKEDKAEENRRNELLKFLNSSFD

A0A1S3BQ85 peptidyl-prolyl cis-trans isomerase G7.8e-1588.68Show/hide
Query:  QRNSFLSREKDNGTRRSAVSGKKILLKLDKSKEDKAEENRRNELLKFLNSSFD
        Q + FL+REKD+GTRRSAVSGKKILLKLDKSKEDKAEEN+RNELLKFLNSSFD
Subjt:  QRNSFLSREKDNGTRRSAVSGKKILLKLDKSKEDKAEENRRNELLKFLNSSFD

A0A6J1C3K8 serine/arginine-rich splicing factor 113.0e-1486.79Show/hide
Query:  QRNSFLSREKDNGTRRSAVSGKKILLKLDKSKEDKAEENRRNELLKFLNSSFD
        Q + FL+REKD+G RRSAVSGKKILLKLDKSKEDKAEEN+RNELLKFLNSSFD
Subjt:  QRNSFLSREKDNGTRRSAVSGKKILLKLDKSKEDKAEENRRNELLKFLNSSFD

A0A6J1HZG5 probable splicing factor, arginine/serine-rich 7 isoform X15.6e-1386.79Show/hide
Query:  QRNSFLSREKDNGTRRSAVSGKKILLKLDKSKEDKAEENRRNELLKFLNSSFD
        Q + FL+RE D+GTRRSAVSGKKILLKLDKSKEDKAEEN+RNELLKFLNSSFD
Subjt:  QRNSFLSREKDNGTRRSAVSGKKILLKLDKSKEDKAEENRRNELLKFLNSSFD

A0A6J1I4D4 NKAP family protein isoform X25.6e-1386.79Show/hide
Query:  QRNSFLSREKDNGTRRSAVSGKKILLKLDKSKEDKAEENRRNELLKFLNSSFD
        Q + FL+RE D+GTRRSAVSGKKILLKLDKSKEDKAEEN+RNELLKFLNSSFD
Subjt:  QRNSFLSREKDNGTRRSAVSGKKILLKLDKSKEDKAEENRRNELLKFLNSSFD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G27860.1 unknown protein2.7e-1578.43Show/hide
Query:  NSFLSREKDNGTRRSAVSGKKILLKLDKSKEDKAEENRRNELLKFLNSSFD
        + FL+R+KD+G RRSAVSGKKILLK+DKSKEDKA E++RNELLKFLN+SFD
Subjt:  NSFLSREKDNGTRRSAVSGKKILLKLDKSKEDKAEENRRNELLKFLNSSFD

AT5G27860.2 unknown protein2.7e-1578.43Show/hide
Query:  NSFLSREKDNGTRRSAVSGKKILLKLDKSKEDKAEENRRNELLKFLNSSFD
        + FL+R+KD+G RRSAVSGKKILLK+DKSKEDKA E++RNELLKFLN+SFD
Subjt:  NSFLSREKDNGTRRSAVSGKKILLKLDKSKEDKAEENRRNELLKFLNSSFD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCTCGAAAGGAGGCTACCTTGAGTAAGGGTAGCCTTGGTGGTCAAAATGGAGGACGAGTCTTTGGTAGGCCTGATTTATCCCAACGCAATAGTTTTTTATCGCG
GGAGAAGGATAATGGTACTCGGCGGAGTGCTGTCTCTGGCAAAAAGATTTTGTTGAAACTTGACAAATCAAAGGAAGACAAAGCAGAGGAAAACAGAAGAAATGAATTGC
TGAAATTCTTGAACTCTAGCTTTGACTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCTCGAAAGGAGGCTACCTTGAGTAAGGGTAGCCTTGGTGGTCAAAATGGAGGACGAGTCTTTGGTAGGCCTGATTTATCCCAACGCAATAGTTTTTTATCGCG
GGAGAAGGATAATGGTACTCGGCGGAGTGCTGTCTCTGGCAAAAAGATTTTGTTGAAACTTGACAAATCAAAGGAAGACAAAGCAGAGGAAAACAGAAGAAATGAATTGC
TGAAATTCTTGAACTCTAGCTTTGACTAATGGCTGTGTATTAAGAATGGAGGAAACAGGCATTATTAGCTGCTGCATGGAAAAATTTCAGTTCAATCAACAGTTGTGTGA
CATTCAAGCCTGTGAACTTTCTTCTCCC
Protein sequenceShow/hide protein sequence
MASRKEATLSKGSLGGQNGGRVFGRPDLSQRNSFLSREKDNGTRRSAVSGKKILLKLDKSKEDKAEENRRNELLKFLNSSFD