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Carg27890 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg27890
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationCarg_Chr10:9334591..9335144
RNA-Seq ExpressionCarg27890
SyntenyCarg27890
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7023994.1 hypothetical protein SDJN02_15022, partial [Cucurbita argyrosperma subsp. argyrosperma]7.4e-62100Show/hide
Query:  MEALLGSMRAWDTVVYEFKEEEMKKEKKALFTIHQRVDGTTFELIVHAKSSENAWEILRLYIKKIQHQYVFTSIVFDYIAVEVEESNKLEEILVEELQDS
        MEALLGSMRAWDTVVYEFKEEEMKKEKKALFTIHQRVDGTTFELIVHAKSSENAWEILRLYIKKIQHQYVFTSIVFDYIAVEVEESNKLEEILVEELQDS
Subjt:  MEALLGSMRAWDTVVYEFKEEEMKKEKKALFTIHQRVDGTTFELIVHAKSSENAWEILRLYIKKIQHQYVFTSIVFDYIAVEVEESNKLEEILVEELQDS

Query:  IQVYEERGLEKEERRRMEQALQANSSQKMDG
        IQVYEERGLEKEERRRMEQALQANSSQKMDG
Subjt:  IQVYEERGLEKEERRRMEQALQANSSQKMDG

KHN11212.1 hypothetical protein glysoja_034441, partial [Glycine soja]6.1e-0844Show/hide
Query:  EEMKKEKKALFTIHQRVDGTTFELIVHAKSSENAWEILRLYIKKIQHQYVFTSI--VFDYIAVEVEESNKLEEILVEELQDSIQVYEERGLEKEERRRME
        E  KK+  A+  IHQ VD   FE IV A +S+ AW+IL    +K   + +  ++   FD+I V +EES KLEEI VEELQ S++V+E+R +E+E  +  E
Subjt:  EEMKKEKKALFTIHQRVDGTTFELIVHAKSSENAWEILRLYIKKIQHQYVFTSI--VFDYIAVEVEESNKLEEILVEELQDSIQVYEERGLEKEERRRME

XP_019419448.1 PREDICTED: uncharacterized protein LOC109329946 [Lupinus angustifolius]4.3e-0937.6Show/hide
Query:  EEEMKKEKKALFTIHQRVDGTTFELIVHAKSSENAWEI----------LRLYIKKIQHQYVFTSIV------FDYIAVEVEESNKLEEILVEELQDSIQV
        +E  KK+ KA+F +HQ VD   FE I  A++S+ AW+I          L+ +++K ++Q++   I+      FD+I V +EES +LEE+ VE+LQ S++ 
Subjt:  EEEMKKEKKALFTIHQRVDGTTFELIVHAKSSENAWEI----------LRLYIKKIQHQYVFTSIV------FDYIAVEVEESNKLEEILVEELQDSIQV

Query:  YEERGLEKEERRRMEQALQANSSQK
        +E+R +E+   R +EQALQA++ ++
Subjt:  YEERGLEKEERRRMEQALQANSSQK

XP_019462948.1 PREDICTED: uncharacterized protein LOC109361872 [Lupinus angustifolius]1.0e-0735.88Show/hide
Query:  MEALLGSMRAWDTVVYEFKEEEMKKEKKALFTIHQRVDGTTFELIVHAKSSENAWEILRLYI---KKIQHQYVFTSIVFDYIAVEVEESNKLEEILVEEL
        ++ + G M   D    E++E   K++ KA+F IHQ VD   FE I  A SS+ AWEIL       KKI+         FD++   +EE+  L+ + V+EL
Subjt:  MEALLGSMRAWDTVVYEFKEEEMKKEKKALFTIHQRVDGTTFELIVHAKSSENAWEILRLYI---KKIQHQYVFTSIVFDYIAVEVEESNKLEEILVEEL

Query:  QDSIQVYEERGLEKEERRRMEQALQANSSQK
        Q S++V+E+R +E++  R+ + AL A   +K
Subjt:  QDSIQVYEERGLEKEERRRMEQALQANSSQK

XP_042418650.1 uncharacterized protein LOC122006990 [Zingiber officinale]3.3e-0933.33Show/hide
Query:  MEALLGSMRAWDTV-----VYEFKEEE-------MKKEKKALFTIHQRVDGTTFELIVHAKSSENAWEILRL------YIKKIQHQY-------------
        ME LLGS+  WD V     + E  +E         K++KK LFTI+Q +D   FELI  A +S+ AWEIL+        +KKI+ Q              
Subjt:  MEALLGSMRAWDTV-----VYEFKEEE-------MKKEKKALFTIHQRVDGTTFELIVHAKSSENAWEILRL------YIKKIQHQY-------------

Query:  -----VFTSIV-----------------------------FDYIAVEVEESNKLEEILVEELQDSIQVYEERGLEKEERRRMEQALQANSSQKMD
              F+ ++                             FD+I V +EES  LE + VE L  S+Q YE+R L+K E R +EQALQA  S K +
Subjt:  -----VFTSIV-----------------------------FDYIAVEVEESNKLEEILVEELQDSIQVYEERGLEKEERRRMEQALQANSSQKMD

TrEMBL top hitse value%identityAlignment
A0A0B2PUL3 Uncharacterized protein (Fragment)3.0e-0844Show/hide
Query:  EEMKKEKKALFTIHQRVDGTTFELIVHAKSSENAWEILRLYIKKIQHQYVFTSI--VFDYIAVEVEESNKLEEILVEELQDSIQVYEERGLEKEERRRME
        E  KK+  A+  IHQ VD   FE IV A +S+ AW+IL    +K   + +  ++   FD+I V +EES KLEEI VEELQ S++V+E+R +E+E  +  E
Subjt:  EEMKKEKKALFTIHQRVDGTTFELIVHAKSSENAWEILRLYIKKIQHQYVFTSI--VFDYIAVEVEESNKLEEILVEELQDSIQVYEERGLEKEERRRME

A0A392NYH4 Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment)2.5e-0739.37Show/hide
Query:  EEEMKKEKKALFTIHQRVDGTTFELIVHAKSSENAWEILR------LYIKKIQHQ----------YVFTSIV--FDYIAVEVEESNKLEEILVEELQDSI
        +E  KK+ KALF +HQ +D   FE I HA  +++AW+IL         +KK+Q Q           V  S+   FDYI V +EES  L  + VEELQ S+
Subjt:  EEEMKKEKKALFTIHQRVDGTTFELIVHAKSSENAWEILR------LYIKKIQHQ----------YVFTSIV--FDYIAVEVEESNKLEEILVEELQDSI

Query:  QVYEERGLEKEERRRMEQALQANSSQK
        + +E+R  E+   RR ++ LQA+ S+K
Subjt:  QVYEERGLEKEERRRMEQALQANSSQK

A0A6A2XI87 CCHC-type domain-containing protein1.1e-0734.06Show/hide
Query:  MEALLGSMRAWDTVVYEFKE-------------------EEMKKEKKALFTIHQRVDGTTFELIVHAKSSENAWEILRLYIKKIQHQYVFTSIV------
        M+ALLGS   WD +   + E                   +  K++KKAL+ I+Q +D   FE I  A SS+ AWE  +L  +K+    +   I+      
Subjt:  MEALLGSMRAWDTVVYEFKE-------------------EEMKKEKKALFTIHQRVDGTTFELIVHAKSSENAWEILRLYIKKIQHQYVFTSIV------

Query:  FDYIAVEVEESNKLEEILVEELQDSIQVYEERGLEKEE
        F++I V +EE+  LEE+ +E+LQ S+Q YEE+  +K E
Subjt:  FDYIAVEVEESNKLEEILVEELQDSIQVYEERGLEKEE

A0A6A3ASR7 TMV resistance protein N-like1.9e-0731.33Show/hide
Query:  MEALLGSMRAWDTVVYEFKE-------------------EEMKKEKKALFTIHQRVDGTTFELIVHAKSSENAWEILRLY------IKKIQHQYVFTSI-
        M+AL+GS   WD +   + E                   +  K++KKAL+ I+Q +D   FE I  A SS+ AWE L+ +      +KK++ Q +   + 
Subjt:  MEALLGSMRAWDTVVYEFKE-------------------EEMKKEKKALFTIHQRVDGTTFELIVHAKSSENAWEILRLY------IKKIQHQYVFTSI-

Query:  -----------VFDYIAVEVEESNKLEEILVEELQDSIQVYEERGLEKEE
                    F++I V +EE+  LEE+ +E+LQ S+Q YEE   +K E
Subjt:  -----------VFDYIAVEVEESNKLEEILVEELQDSIQVYEERGLEKEE

A0A6I9RF49 uncharacterized protein LOC1050480384.3e-0730.57Show/hide
Query:  MEALLGSMRAWDTVVYEFKE------------EEMKKEKKALFTIHQRVDGTTFELIVHAKSSENAWEILRLYIKKI---------------------QH
        M+ALLGS   WD V   ++E            E  K++KKAL+ I+Q +D + FE I  A +S+ AWEIL+   K++                     + 
Subjt:  MEALLGSMRAWDTVVYEFKE------------EEMKKEKKALFTIHQRVDGTTFELIVHAKSSENAWEILRLYIKKI---------------------QH

Query:  QYV---FTSIV-----------------------------FDYIAVEVEESNKLEEILVEELQDSIQVYEERGLEKEERRRMEQALQANSSQK
        +YV   FT ++                             F+YI V +EES  LEE+ ++EL  S+Q +EER   K  R  +EQ LQ+  S K
Subjt:  QYV---FTSIV-----------------------------FDYIAVEVEESNKLEEILVEELQDSIQVYEERGLEKEERRRMEQALQANSSQK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGCCTTGTTGGGATCTATGAGAGCATGGGACACAGTGGTGTATGAGTTCAAGGAGGAGGAGATGAAGAAGGAGAAGAAGGCGTTATTCACAATCCACCAAAGAGT
AGATGGCACCACGTTTGAGTTGATCGTCCATGCAAAATCTTCTGAGAATGCTTGGGAGATTTTGAGGCTCTACATCAAGAAGATTCAACATCAATATGTGTTTACTTCCA
TTGTGTTTGACTACATTGCTGTGGAAGTTGAAGAATCTAATAAACTTGAAGAAATATTAGTAGAGGAGCTTCAAGACTCTATACAAGTCTATGAAGAAAGAGGCTTAGAG
AAAGAAGAAAGAAGACGTATGGAGCAAGCACTGCAAGCCAACTCTTCCCAAAAGATGGATGGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGGCCTTGTTGGGATCTATGAGAGCATGGGACACAGTGGTGTATGAGTTCAAGGAGGAGGAGATGAAGAAGGAGAAGAAGGCGTTATTCACAATCCACCAAAGAGT
AGATGGCACCACGTTTGAGTTGATCGTCCATGCAAAATCTTCTGAGAATGCTTGGGAGATTTTGAGGCTCTACATCAAGAAGATTCAACATCAATATGTGTTTACTTCCA
TTGTGTTTGACTACATTGCTGTGGAAGTTGAAGAATCTAATAAACTTGAAGAAATATTAGTAGAGGAGCTTCAAGACTCTATACAAGTCTATGAAGAAAGAGGCTTAGAG
AAAGAAGAAAGAAGACGTATGGAGCAAGCACTGCAAGCCAACTCTTCCCAAAAGATGGATGGCTAG
Protein sequenceShow/hide protein sequence
MEALLGSMRAWDTVVYEFKEEEMKKEKKALFTIHQRVDGTTFELIVHAKSSENAWEILRLYIKKIQHQYVFTSIVFDYIAVEVEESNKLEEILVEELQDSIQVYEERGLE
KEERRRMEQALQANSSQKMDG