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Carg27895 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg27895
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionmalignant T-cell-amplified sequence 1 homolog
Genome locationCarg_Chr10:9303653..9304810
RNA-Seq ExpressionCarg27895
SyntenyCarg27895
Gene Ontology termsGO:0001731 - formation of translation preinitiation complex (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR002478 - PUA domain
IPR004521 - Uncharacterised domain CHP00451
IPR015947 - PUA-like superfamily
IPR016437 - MCT-1/Tma20
IPR036974 - PUA domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7023989.1 TMA20 [Cucurbita argyrosperma subsp. argyrosperma]4.8e-41100Show/hide
Query:  MKKLQVDRGAIKFVLAGANIMCPGLTSPGGALDDEVEADTPVVKHPLLSTDSKSSSFIPFVIVSRWNDSIEGILKKQRRGMGGADTT
        MKKLQVDRGAIKFVLAGANIMCPGLTSPGGALDDEVEADTPVVKHPLLSTDSKSSSFIPFVIVSRWNDSIEGILKKQRRGMGGADTT
Subjt:  MKKLQVDRGAIKFVLAGANIMCPGLTSPGGALDDEVEADTPVVKHPLLSTDSKSSSFIPFVIVSRWNDSIEGILKKQRRGMGGADTT
TXG65172.1 hypothetical protein EZV62_006447 [Acer yangbiense]5.0e-1458.54Show/hide
Query:  MKKLQVDRGAIKFVLAGANIMCPGLTSPGGALDDEVEADTPVVKHPLLSTDSKSSSFIPFVIVSRWNDSIEGILKKQRRGMG
        MKKLQVDRGAIKFVLAGANIMCPGLTSPGGALDDEVEA+TPV    +++   + +  I F  +S  +      +KK  +G+G
Subjt:  MKKLQVDRGAIKFVLAGANIMCPGLTSPGGALDDEVEADTPVVKHPLLSTDSKSSSFIPFVIVSRWNDSIEGILKKQRRGMG
XP_022135845.1 malignant T-cell-amplified sequence 1 homolog [Momordica charantia]5.0e-14100Show/hide
Query:  MKKLQVDRGAIKFVLAGANIMCPGLTSPGGALDDEVEADTPV
        MKKLQVDRGAIKFVLAGANIMCPGLTSPGGALDDEVEADTPV
Subjt:  MKKLQVDRGAIKFVLAGANIMCPGLTSPGGALDDEVEADTPV
XP_022968801.1 malignant T-cell-amplified sequence 1 homolog [Cucurbita maxima]5.0e-14100Show/hide
Query:  MKKLQVDRGAIKFVLAGANIMCPGLTSPGGALDDEVEADTPV
        MKKLQVDRGAIKFVLAGANIMCPGLTSPGGALDDEVEADTPV
Subjt:  MKKLQVDRGAIKFVLAGANIMCPGLTSPGGALDDEVEADTPV
XP_023515958.1 malignant T-cell-amplified sequence 1 homolog [Cucurbita pepo subsp. pepo]5.0e-14100Show/hide
Query:  MKKLQVDRGAIKFVLAGANIMCPGLTSPGGALDDEVEADTPV
        MKKLQVDRGAIKFVLAGANIMCPGLTSPGGALDDEVEADTPV
Subjt:  MKKLQVDRGAIKFVLAGANIMCPGLTSPGGALDDEVEADTPV
TrEMBL top hitse value%identityAlignment
A0A5C7HDJ4 PUA domain-containing protein7.0e-1497.62Show/hide
Query:  MKKLQVDRGAIKFVLAGANIMCPGLTSPGGALDDEVEADTPV
        MKKLQVDRGAIKFVLAGANIMCPGLTSPGGALDDEVEA+TPV
Subjt:  MKKLQVDRGAIKFVLAGANIMCPGLTSPGGALDDEVEADTPV
A0A5C7I957 PUA domain-containing protein2.4e-1458.54Show/hide
Query:  MKKLQVDRGAIKFVLAGANIMCPGLTSPGGALDDEVEADTPVVKHPLLSTDSKSSSFIPFVIVSRWNDSIEGILKKQRRGMG
        MKKLQVDRGAIKFVLAGANIMCPGLTSPGGALDDEVEA+TPV    +++   + +  I F  +S  +      +KK  +G+G
Subjt:  MKKLQVDRGAIKFVLAGANIMCPGLTSPGGALDDEVEADTPVVKHPLLSTDSKSSSFIPFVIVSRWNDSIEGILKKQRRGMG
A0A6J1C273 malignant T-cell-amplified sequence 1 homolog2.4e-14100Show/hide
Query:  MKKLQVDRGAIKFVLAGANIMCPGLTSPGGALDDEVEADTPV
        MKKLQVDRGAIKFVLAGANIMCPGLTSPGGALDDEVEADTPV
Subjt:  MKKLQVDRGAIKFVLAGANIMCPGLTSPGGALDDEVEADTPV
A0A6J1HC33 malignant T-cell-amplified sequence 1 homolog2.4e-14100Show/hide
Query:  MKKLQVDRGAIKFVLAGANIMCPGLTSPGGALDDEVEADTPV
        MKKLQVDRGAIKFVLAGANIMCPGLTSPGGALDDEVEADTPV
Subjt:  MKKLQVDRGAIKFVLAGANIMCPGLTSPGGALDDEVEADTPV
A0A6J1HVW2 malignant T-cell-amplified sequence 1 homolog2.4e-14100Show/hide
Query:  MKKLQVDRGAIKFVLAGANIMCPGLTSPGGALDDEVEADTPV
        MKKLQVDRGAIKFVLAGANIMCPGLTSPGGALDDEVEADTPV
Subjt:  MKKLQVDRGAIKFVLAGANIMCPGLTSPGGALDDEVEADTPV
SwissProt top hitse value%identityAlignment
P87313 Translation machinery-associated protein 204.7e-0760.98Show/hide
Query:  KLQVDRGAIKFVLAGANIMCPGLTSPGGALDDEVEADTPVV
        +++VDRGAIKF+L+GANIM PGL S GG L D++E D  V+
Subjt:  KLQVDRGAIKFVLAGANIMCPGLTSPGGALDDEVEADTPVV
Q5PPY1 Malignant T-cell-amplified sequence 1-A8.0e-0785.71Show/hide
Query:  QVDRGAIKFVLAGANIMCPGLTSPGGAL
        QVD+GAIKFVL+GANIMCPGLTSPG  L
Subjt:  QVDRGAIKFVLAGANIMCPGLTSPGGAL
Q6NRJ7 Malignant T-cell-amplified sequence 1-B8.0e-0785.71Show/hide
Query:  QVDRGAIKFVLAGANIMCPGLTSPGGAL
        QVD+GAIKFVL+GANIMCPGLTSPG  L
Subjt:  QVDRGAIKFVLAGANIMCPGLTSPGGAL
Q75AA8 Translation machinery-associated protein 204.7e-0777.42Show/hide
Query:  LQVDRGAIKFVLAGANIMCPGLTSPGGALDD
        +Q+DRGAIKFVL+GANIMCPGLTS G AL +
Subjt:  LQVDRGAIKFVLAGANIMCPGLTSPGGALDD
Q7ZV34 Malignant T-cell-amplified sequence 13.6e-0773.68Show/hide
Query:  QVDRGAIKFVLAGANIMCPGLTSPGGALDDEVEADTPV
        QVD+GAIKFVL+GANIMCPGLTSPG  L    E+DT V
Subjt:  QVDRGAIKFVLAGANIMCPGLTSPGGALDDEVEADTPV
Arabidopsis top hitse value%identityAlignment
AT1G09150.1 pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein1.4e-1483.33Show/hide
Query:  MKKLQVDRGAIKFVLAGANIMCPGLTSPGGALDDEVEADTPV
        MK+ QVDRGAIKFVL+GANIMCPGLTSPGG LD EVEA+ PV
Subjt:  MKKLQVDRGAIKFVLAGANIMCPGLTSPGGALDDEVEADTPV

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAAAATTACAAGTAGACAGAGGTGCCATAAAGTTTGTCCTTGCTGGTGCTAACATAATGTGTCCTGGTCTTACGTCCCCCGGCGGTGCCTTGGACGATGAAGTCGA
AGCCGATACGCCTGTGGTAAAACATCCGCTCTTATCTACCGACTCAAAGTCTTCGTCGTTTATTCCGTTTGTGATTGTTAGTAGATGGAACGACTCGATTGAGGGTATCT
TAAAGAAACAACGTCGGGGGATGGGTGGGGCCGACACGACTTAG
mRNA sequenceShow/hide mRNA sequence
ATCCTAACATTATGAAAAAATTACAAGTAGACAGAGGTGCCATAAAGTTTGTCCTTGCTGGTGCTAACATAATGTGTCCTGGTCTTACGTCCCCCGGCGGTGCCTTGGAC
GATGAAGTCGAAGCCGATACGCCTGTGGTAAAACATCCGCTCTTATCTACCGACTCAAAGTCTTCGTCGTTTATTCCGTTTGTGATTGTTAGTAGATGGAACGACTCGAT
TGAGGGTATCTTAAAGAAACAACGTCGGGGGATGGGTGGGGCCGACACGACTTAGAGAACGAACTTCGTTTAATTTCTTCATTCTCTGCACTTTTATAAGTCTTAACAGC
CTATTTTGTCTCCATATTTTTAGTATCAGAATTGTACTTAAAATCCCTTCACATTATTATGTGAATCTGCACTCCATGCACTTCTTTGCATCATTTTGTTCGGTCGGTTA
AGCTATGCTCAAATTAACATCTTTTTTTTTCAAGATGTCCTTGGGTTAGAGAAGGGGAAGGCTTCTCCGTCCCTATCCTTGCCACCTATTTCATTTCTTATCCACAAAGC
TTTCCATTTATTTTTATTATTTTTTATTTTTTGGATGATACCACCGCTTGTCACAATCGCACTTTGATG
Protein sequenceShow/hide protein sequence
MKKLQVDRGAIKFVLAGANIMCPGLTSPGGALDDEVEADTPVVKHPLLSTDSKSSSFIPFVIVSRWNDSIEGILKKQRRGMGGADTT