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Carg27896 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg27896
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description50S ribosomal protein L18
Genome locationCarg_Chr10:9164714..9165058
RNA-Seq ExpressionCarg27896
SyntenyCarg27896
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0008097 - 5S rRNA binding (molecular function)
InterPro domainsIPR005484 - Ribosomal protein L18


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6590442.1 hypothetical protein SDJN03_15865, partial [Cucurbita argyrosperma subsp. sororia]1.0e-51100Show/hide
Query:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLMLKGIPAVCVHLKREQKYHGKVK
        MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLMLKGIPAVCVHLKREQKYHGKVK
Subjt:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLMLKGIPAVCVHLKREQKYHGKVK

Query:  AVVDSVREAGIKLL
        AVVDSVREAGIKLL
Subjt:  AVVDSVREAGIKLL

XP_022961444.1 uncharacterized protein LOC111462025 [Cucurbita moschata]3.0e-5199.12Show/hide
Query:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLMLKGIPAVCVHLKREQKYHGKVK
        MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQKYHGKVK
Subjt:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLMLKGIPAVCVHLKREQKYHGKVK

Query:  AVVDSVREAGIKLL
        AVVDSVREAGIKLL
Subjt:  AVVDSVREAGIKLL

XP_022968817.1 uncharacterized protein LOC111467940 [Cucurbita maxima]3.0e-5199.12Show/hide
Query:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLMLKGIPAVCVHLKREQKYHGKVK
        MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEK LRSSMESTRDVAAAAKIGKLLGERLMLKGIPAVCVHLKREQKYHGKVK
Subjt:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLMLKGIPAVCVHLKREQKYHGKVK

Query:  AVVDSVREAGIKLL
        AVVDSVREAGIKLL
Subjt:  AVVDSVREAGIKLL

XP_022970166.1 uncharacterized protein LOC111469142 [Cucurbita maxima]5.7e-5094.74Show/hide
Query:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLMLKGIPAVCVHLKREQKYHGKVK
        MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETAT+ASAASSQEKALR SMESTRDVAAA KIGKLLGERL+LKGIPAVCVHLKREQKYHGK+K
Subjt:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLMLKGIPAVCVHLKREQKYHGKVK

Query:  AVVDSVREAGIKLL
        AV+DSVREAGIKLL
Subjt:  AVVDSVREAGIKLL

XP_023515963.1 uncharacterized protein LOC111779971 [Cucurbita pepo subsp. pepo]3.9e-5198.25Show/hide
Query:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLMLKGIPAVCVHLKREQKYHGKVK
        MVIPPPVRPPRLTQYLKPY+LKMHFTNKYVSAQVIHS+TATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLMLKGIPAVCVHLKREQKYHGKVK
Subjt:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLMLKGIPAVCVHLKREQKYHGKVK

Query:  AVVDSVREAGIKLL
        AVVDSVREAGIKLL
Subjt:  AVVDSVREAGIKLL

TrEMBL top hitse value%identityAlignment
A0A5D3DYC1 50S ribosomal protein L186.1e-5094.74Show/hide
Query:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLMLKGIPAVCVHLKREQKYHGKVK
        MVIPPP++PPRL QYLKPYVLKMHFTNK+VSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQKYHGKVK
Subjt:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLMLKGIPAVCVHLKREQKYHGKVK

Query:  AVVDSVREAGIKLL
        AV+DSVREAGIKLL
Subjt:  AVVDSVREAGIKLL

A0A6J1CWR7 uncharacterized protein LOC1110152866.1e-5095.61Show/hide
Query:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLMLKGIPAVCVHLKREQKYHGKVK
        MVIPPPVRP R+TQYLKPYVLKMHFTNKYVSAQV+HSETATVASAASSQEKALR+SMESTRDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQKYHGKVK
Subjt:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLMLKGIPAVCVHLKREQKYHGKVK

Query:  AVVDSVREAGIKLL
        AVVDSVREAGIKLL
Subjt:  AVVDSVREAGIKLL

A0A6J1HE21 uncharacterized protein LOC1114620251.5e-5199.12Show/hide
Query:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLMLKGIPAVCVHLKREQKYHGKVK
        MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQKYHGKVK
Subjt:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLMLKGIPAVCVHLKREQKYHGKVK

Query:  AVVDSVREAGIKLL
        AVVDSVREAGIKLL
Subjt:  AVVDSVREAGIKLL

A0A6J1HZV8 uncharacterized protein LOC1114691422.7e-5094.74Show/hide
Query:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLMLKGIPAVCVHLKREQKYHGKVK
        MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETAT+ASAASSQEKALR SMESTRDVAAA KIGKLLGERL+LKGIPAVCVHLKREQKYHGK+K
Subjt:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLMLKGIPAVCVHLKREQKYHGKVK

Query:  AVVDSVREAGIKLL
        AV+DSVREAGIKLL
Subjt:  AVVDSVREAGIKLL

A0A6J1I0R8 uncharacterized protein LOC1114679401.5e-5199.12Show/hide
Query:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLMLKGIPAVCVHLKREQKYHGKVK
        MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEK LRSSMESTRDVAAAAKIGKLLGERLMLKGIPAVCVHLKREQKYHGKVK
Subjt:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLMLKGIPAVCVHLKREQKYHGKVK

Query:  AVVDSVREAGIKLL
        AVVDSVREAGIKLL
Subjt:  AVVDSVREAGIKLL

SwissProt top hitse value%identityAlignment
A8IAP8 50S ribosomal protein L183.5e-1044.57Show/hide
Query:  LKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLMLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIK
        L +H T+K++ AQ+I         AASS EK LRSS+++  DV AA  IGKL+ ER   KG+ AV V  +    YHG+VKA+ +  RE G++
Subjt:  LKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLMLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIK

B6EPU1 50S ribosomal protein L181.0e-0945.65Show/hide
Query:  LKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLMLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIK
        L +H T ++  AQVI    + V +AAS+ EKA+R  + +T + AAA  IGKL+ ER + KGI  V       Q YHG+V A+ DS REAG+K
Subjt:  LKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLMLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIK

B7VLE1 50S ribosomal protein L181.0e-0942.39Show/hide
Query:  LKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLMLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIK
        L +H T ++V AQVI +  + V +AAS+ EKA+R  +++T +V AA  +GK + ER + KG+ +V       Q YHG+V A+ +S REAG+K
Subjt:  LKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLMLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIK

P52863 50S ribosomal protein L185.9e-1043.48Show/hide
Query:  LKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLMLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIK
        L +H T ++V AQVI S  + V +AAS+ EKA+R  +++T +V AA  +GK + ER + KG+  V       Q YHG+V A+ +S REAG+K
Subjt:  LKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLMLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIK

Q5E898 50S ribosomal protein L181.3e-0945.65Show/hide
Query:  LKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLMLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIK
        L +H T ++  AQVI    + V +AAS+ EKA+R  + ST + AAA  IGKL+ ER + KGI  V       Q YHG+V A+ +S REAG+K
Subjt:  LKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLMLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIK

Arabidopsis top hitse value%identityAlignment
AT1G08845.1 Ribosomal L18p/L5e family protein6.3e-0727.72Show/hide
Query:  RLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLMLKGIPAVCVHLKREQKYHGKVKAVVDSVREAG
        R   Y++P+ L +  + ++VSA + H  T    + A +  K +++ + S  D+ A   IG++L ER     +       + + K+ GK++AVV S+ + G
Subjt:  RLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLMLKGIPAVCVHLKREQKYHGKVKAVVDSVREAG

Query:  I
        I
Subjt:  I

AT1G08845.2 Ribosomal L18p/L5e family protein6.3e-0727.72Show/hide
Query:  RLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLMLKGIPAVCVHLKREQKYHGKVKAVVDSVREAG
        R   Y++P+ L +  + ++VSA + H  T    + A +  K +++ + S  D+ A   IG++L ER     +       + + K+ GK++AVV S+ + G
Subjt:  RLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLMLKGIPAVCVHLKREQKYHGKVKAVVDSVREAG

Query:  I
        I
Subjt:  I

AT3G20230.1 Ribosomal L18p/L5e family protein2.1e-1032.67Show/hide
Query:  RLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLMLKGIPAVCVHLKREQKYHGKVKAVVDSVREAG
        R   Y++P++L + F+ K++ A+V+H  T+ V S A++  + +R+++ S  D  A   IGKL+ ER M   + AV    ++ ++  GK+  V+D+++E G
Subjt:  RLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLMLKGIPAVCVHLKREQKYHGKVKAVVDSVREAG

Query:  I
        I
Subjt:  I

AT3G45020.1 Ribosomal L18p/L5e family protein1.6e-0530.63Show/hide
Query:  LKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTR--DVAAAAKIGKLLGERLMLKGIP-----AVCVHLKREQKYHG-----KVKAVV
        LK YVL++  + KY++A V+      + + AS+ E  +++S+E  R  +  AAA +G++L  RL ++G+       +   +K+E +  G     KV AV+
Subjt:  LKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTR--DVAAAAKIGKLLGERLMLKGIP-----AVCVHLKREQKYHG-----KVKAVV

Query:  DSVREAGIKLL
        +S+R  G+ L+
Subjt:  DSVREAGIKLL

AT5G27820.1 Ribosomal L18p/L5e family protein1.4e-4378.07Show/hide
Query:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLMLKGIPAVCVHLKREQKYHGKVK
        MVIPP VRPPRL  YLKPYVLKMHFTNK+V AQVIHS TATVA +ASSQEKALR +M+ TRDVAAA+KIGK+LGERL++K IPAV + +K+EQ+YHGKVK
Subjt:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLMLKGIPAVCVHLKREQKYHGKVK

Query:  AVVDSVREAGIKLL
        AV+DSVREAG+KLL
Subjt:  AVVDSVREAGIKLL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGATTCCTCCTCCAGTTAGGCCACCAAGATTAACCCAGTACCTAAAGCCATATGTCTTGAAAATGCACTTCACAAACAAGTATGTTAGTGCCCAAGTGATCCACTC
CGAAACAGCCACGGTTGCTTCAGCTGCAAGCTCCCAGGAGAAGGCGCTGCGGTCGAGCATGGAGTCGACAAGGGATGTGGCTGCTGCCGCAAAGATTGGGAAATTGTTGG
GCGAGAGGCTTATGCTCAAGGGAATCCCAGCTGTTTGTGTACACTTGAAAAGAGAACAGAAATATCATGGTAAGGTCAAAGCTGTCGTTGATTCTGTGAGGGAAGCAGGC
ATTAAGCTGCTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTGATTCCTCCTCCAGTTAGGCCACCAAGATTAACCCAGTACCTAAAGCCATATGTCTTGAAAATGCACTTCACAAACAAGTATGTTAGTGCCCAAGTGATCCACTC
CGAAACAGCCACGGTTGCTTCAGCTGCAAGCTCCCAGGAGAAGGCGCTGCGGTCGAGCATGGAGTCGACAAGGGATGTGGCTGCTGCCGCAAAGATTGGGAAATTGTTGG
GCGAGAGGCTTATGCTCAAGGGAATCCCAGCTGTTTGTGTACACTTGAAAAGAGAACAGAAATATCATGGTAAGGTCAAAGCTGTCGTTGATTCTGTGAGGGAAGCAGGC
ATTAAGCTGCTTTAA
Protein sequenceShow/hide protein sequence
MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLMLKGIPAVCVHLKREQKYHGKVKAVVDSVREAG
IKLL