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Carg27941 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg27941
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionE3 ubiquitin-protein ligase MARCH8
Genome locationCarg_Chr14:9159876..9161817
RNA-Seq ExpressionCarg27941
SyntenyCarg27941
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6581761.1 E3 ubiquitin-protein ligase MARCHF8, partial [Cucurbita argyrosperma subsp. sororia]1.9e-2894.59Show/hide
Query:  YNFFS-AVLAIILVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYIVEDREHNKNVPELDPSHVMELRMLGL
        Y F++ AVLAIILVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYIVEDREHNKNVPELDPSHVMELRMLGL
Subjt:  YNFFS-AVLAIILVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYIVEDREHNKNVPELDPSHVMELRMLGL

KAG7018210.1 hypothetical protein SDJN02_20078, partial [Cucurbita argyrosperma subsp. argyrosperma]1.1e-49100Show/hide
Query:  MNPCLKSSDGFRKCSCSTIYLFNSSFYNFFSAVLAIILVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYIVEDREHNKNVPELDPSHVMELRMLGLL
        MNPCLKSSDGFRKCSCSTIYLFNSSFYNFFSAVLAIILVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYIVEDREHNKNVPELDPSHVMELRMLGLL
Subjt:  MNPCLKSSDGFRKCSCSTIYLFNSSFYNFFSAVLAIILVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYIVEDREHNKNVPELDPSHVMELRMLGLL

Query:  GEL
        GEL
Subjt:  GEL

XP_022148238.1 E3 ubiquitin-protein ligase MARCH8 [Momordica charantia]1.9e-2894.59Show/hide
Query:  YNFFS-AVLAIILVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYIVEDREHNKNVPELDPSHVMELRMLGL
        Y F++ AVLAIILVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYIVEDREHNKNVPELDPSHVMELRMLGL
Subjt:  YNFFS-AVLAIILVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYIVEDREHNKNVPELDPSHVMELRMLGL

XP_022956176.1 E3 ubiquitin-protein ligase MARCH1-like [Cucurbita moschata]1.9e-2894.59Show/hide
Query:  YNFFS-AVLAIILVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYIVEDREHNKNVPELDPSHVMELRMLGL
        Y F++ AVLAIILVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYIVEDREHNKNVPELDPSHVMELRMLGL
Subjt:  YNFFS-AVLAIILVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYIVEDREHNKNVPELDPSHVMELRMLGL

XP_023527023.1 E3 ubiquitin-protein ligase MARCH1 [Cucurbita pepo subsp. pepo]1.9e-2894.59Show/hide
Query:  YNFFS-AVLAIILVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYIVEDREHNKNVPELDPSHVMELRMLGL
        Y F++ AVLAIILVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYIVEDREHNKNVPELDPSHVMELRMLGL
Subjt:  YNFFS-AVLAIILVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYIVEDREHNKNVPELDPSHVMELRMLGL

TrEMBL top hitse value%identityAlignment
A0A0A0LE97 RING-CH-type domain-containing protein2.0e-2893.24Show/hide
Query:  YNFFS-AVLAIILVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYIVEDREHNKNVPELDPSHVMELRMLGL
        Y F++ AVLAIILVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYIVEDREHNKNVPELDPSHVMELR+LGL
Subjt:  YNFFS-AVLAIILVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYIVEDREHNKNVPELDPSHVMELRMLGL

A0A1S3CN40 E3 ubiquitin-protein ligase MARCH8 isoform X19.1e-2994.59Show/hide
Query:  YNFFS-AVLAIILVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYIVEDREHNKNVPELDPSHVMELRMLGL
        Y F++ AVLAIILVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYIVEDREHNKNVPELDPSHVMELRMLGL
Subjt:  YNFFS-AVLAIILVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYIVEDREHNKNVPELDPSHVMELRMLGL

A0A5A7VT08 E3 ubiquitin-protein ligase MARCH8 isoform X19.1e-2994.59Show/hide
Query:  YNFFS-AVLAIILVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYIVEDREHNKNVPELDPSHVMELRMLGL
        Y F++ AVLAIILVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYIVEDREHNKNVPELDPSHVMELRMLGL
Subjt:  YNFFS-AVLAIILVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYIVEDREHNKNVPELDPSHVMELRMLGL

A0A6J1D3J3 E3 ubiquitin-protein ligase MARCH89.1e-2994.59Show/hide
Query:  YNFFS-AVLAIILVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYIVEDREHNKNVPELDPSHVMELRMLGL
        Y F++ AVLAIILVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYIVEDREHNKNVPELDPSHVMELRMLGL
Subjt:  YNFFS-AVLAIILVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYIVEDREHNKNVPELDPSHVMELRMLGL

A0A6J1GVL5 E3 ubiquitin-protein ligase MARCH1-like9.1e-2994.59Show/hide
Query:  YNFFS-AVLAIILVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYIVEDREHNKNVPELDPSHVMELRMLGL
        Y F++ AVLAIILVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYIVEDREHNKNVPELDPSHVMELRMLGL
Subjt:  YNFFS-AVLAIILVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYIVEDREHNKNVPELDPSHVMELRMLGL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G11020.1 RING/FYVE/PHD zinc finger superfamily protein2.2e-1151.47Show/hide
Query:  VLAIILVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYIVEDREHNKNVPELDPSHVMELRMLGLL
        V+   ++GL YGF  A +  QRI +RHYH+L K+ELTKEYIVED   +   P+LD  H   L+ML LL
Subjt:  VLAIILVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYIVEDREHNKNVPELDPSHVMELRMLGLL

AT1G50440.1 RING/FYVE/PHD zinc finger superfamily protein5.0e-2785.14Show/hide
Query:  YNFFS-AVLAIILVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYIVEDREHNKNVPELDPSHVMELRMLGL
        Y F++ AVLAI+LVGLLYGFFIAIICGQ+INERHYHVLAKQELTKEYIVEDR+  KNVPELD SHVMEL+MLGL
Subjt:  YNFFS-AVLAIILVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYIVEDREHNKNVPELDPSHVMELRMLGL

AT1G50440.2 RING/FYVE/PHD zinc finger superfamily protein5.0e-2785.14Show/hide
Query:  YNFFS-AVLAIILVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYIVEDREHNKNVPELDPSHVMELRMLGL
        Y F++ AVLAI+LVGLLYGFFIAIICGQ+INERHYHVLAKQELTKEYIVEDR+  KNVPELD SHVMEL+MLGL
Subjt:  YNFFS-AVLAIILVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYIVEDREHNKNVPELDPSHVMELRMLGL

AT1G50440.3 RING/FYVE/PHD zinc finger superfamily protein5.0e-2785.14Show/hide
Query:  YNFFS-AVLAIILVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYIVEDREHNKNVPELDPSHVMELRMLGL
        Y F++ AVLAI+LVGLLYGFFIAIICGQ+INERHYHVLAKQELTKEYIVEDR+  KNVPELD SHVMEL+MLGL
Subjt:  YNFFS-AVLAIILVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYIVEDREHNKNVPELDPSHVMELRMLGL

AT2G22120.1 RING/FYVE/PHD zinc finger superfamily protein9.4e-1045.59Show/hide
Query:  LVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYIVEDREHNK-----NVPELDPSHVMELRMLGLL
        ++G+ Y   +A + GQRI +RHYH+LAK+ LTKEY+VED +        + P L   HV +L+ LGLL
Subjt:  LVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYIVEDREHNK-----NVPELDPSHVMELRMLGLL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATCCTTGCCTGAAATCAAGTGACGGCTTTAGAAAATGTAGTTGCTCTACTATCTATCTTTTTAATTCTTCGTTCTACAATTTCTTTTCTGCAGTCTTGGCGATCAT
CTTGGTTGGCTTACTCTATGGTTTCTTCATAGCCATTATATGCGGGCAGAGGATAAATGAACGCCACTACCATGTCCTTGCTAAGCAAGAACTGACAAAGGAATATATAG
TTGAAGATCGAGAACATAACAAGAACGTTCCTGAATTAGACCCCAGCCATGTTATGGAGCTAAGGATGTTGGGGCTACTTGGAGAGCTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAATCCTTGCCTGAAATCAAGTGACGGCTTTAGAAAATGTAGTTGCTCTACTATCTATCTTTTTAATTCTTCGTTCTACAATTTCTTTTCTGCAGTCTTGGCGATCAT
CTTGGTTGGCTTACTCTATGGTTTCTTCATAGCCATTATATGCGGGCAGAGGATAAATGAACGCCACTACCATGTCCTTGCTAAGCAAGAACTGACAAAGGAATATATAG
TTGAAGATCGAGAACATAACAAGAACGTTCCTGAATTAGACCCCAGCCATGTTATGGAGCTAAGGATGTTGGGGCTACTTGGAGAGCTTTAA
Protein sequenceShow/hide protein sequence
MNPCLKSSDGFRKCSCSTIYLFNSSFYNFFSAVLAIILVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYIVEDREHNKNVPELDPSHVMELRMLGLLGEL