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Carg27942 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg27942
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionRING-CH-type domain-containing protein
Genome locationCarg_Chr14:9158372..9159862
RNA-Seq ExpressionCarg27942
SyntenyCarg27942
Gene Ontology termsGO:0016020 - membrane (cellular component)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR011016 - Zinc finger, RING-CH-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7018208.1 hypothetical protein SDJN02_20076, partial [Cucurbita argyrosperma subsp. argyrosperma]4.4e-3581.37Show/hide
Query:  FCSLYRVQAMFVLRANVLLIAWWLRLKFQFLVARDHAGVFAMCFEQIVAFLGVLVYKFYGEELREMFGYEEHPYGFYAMAGILRLPTNSLLFILLYICIE
        F      +AMFVLRANV    WWLRLKFQFLVARDHA +F +  + IVAFLGVLVYKFYGEELREMFGYEEHPYGFYAMAGILRLPTNSLLFILLYICIE
Subjt:  FCSLYRVQAMFVLRANVLLIAWWLRLKFQFLVARDHAGVFAMCFEQIVAFLGVLVYKFYGEELREMFGYEEHPYGFYAMAGILRLPTNSLLFILLYICIE

Query:  HF
        HF
Subjt:  HF

KAG7018209.1 hypothetical protein SDJN02_20077 [Cucurbita argyrosperma subsp. argyrosperma]5.6e-91100Show/hide
Query:  MQTNHNVVYALTPEEKILIAPCHCKGTQKYVHRSCLIIGGPQRRLCFCSLYRVQAMFVLRANVLLIAWWLRLKFQFLVARDHAGVFAMCFEQIVAFLGVL
        MQTNHNVVYALTPEEKILIAPCHCKGTQKYVHRSCLIIGGPQRRLCFCSLYRVQAMFVLRANVLLIAWWLRLKFQFLVARDHAGVFAMCFEQIVAFLGVL
Subjt:  MQTNHNVVYALTPEEKILIAPCHCKGTQKYVHRSCLIIGGPQRRLCFCSLYRVQAMFVLRANVLLIAWWLRLKFQFLVARDHAGVFAMCFEQIVAFLGVL

Query:  VYKFYGEELREMFGYEEHPYGFYAMAGILRLPTNSLLFILLYICIEHFSVSECSHTIFWFQSIRRI
        VYKFYGEELREMFGYEEHPYGFYAMAGILRLPTNSLLFILLYICIEHFSVSECSHTIFWFQSIRRI
Subjt:  VYKFYGEELREMFGYEEHPYGFYAMAGILRLPTNSLLFILLYICIEHFSVSECSHTIFWFQSIRRI

PNT18644.1 hypothetical protein POPTR_010G252900 [Populus trichocarpa]2.2e-3469.75Show/hide
Query:  LTPEEKILIAPCHCKGTQKYVHRSCL-IIGGPQRRLCFCSLYRVQAMFVLRANVLLIAWWLRLKFQFLVARDHAGVFAMCFEQIVAFLGVLVYKFYGEEL
        L  E + LIAPCHCKGTQKYVHRSCL      +    F      +AMFVLRANV    WWLRLKFQFLVARDHA +F +  + IVAFLGVLVYKFYGEEL
Subjt:  LTPEEKILIAPCHCKGTQKYVHRSCL-IIGGPQRRLCFCSLYRVQAMFVLRANVLLIAWWLRLKFQFLVARDHAGVFAMCFEQIVAFLGVLVYKFYGEEL

Query:  REMFGYEEHPYGFYAMAGI
        REMFGYEEHPYGFY MAGI
Subjt:  REMFGYEEHPYGFYAMAGI

PNT18645.1 hypothetical protein POPTR_010G252900 [Populus trichocarpa]4.8e-3468.91Show/hide
Query:  LTPEEKILIAPCHCKGTQKYVHRSCL-IIGGPQRRLCFCSLYRVQAMFVLRANVLLIAWWLRLKFQFLVARDHAGVFAMCFEQIVAFLGVLVYKFYGEEL
        L  E + LIAPCHCKGTQKYVHRSCL      +    F      +AMFVLRANV    WWLRLKFQFLVARDHA +F +  + IVAFLGVLVYKFYGEEL
Subjt:  LTPEEKILIAPCHCKGTQKYVHRSCL-IIGGPQRRLCFCSLYRVQAMFVLRANVLLIAWWLRLKFQFLVARDHAGVFAMCFEQIVAFLGVLVYKFYGEEL

Query:  REMFGYEEHPYGFYAMAGI
        REMFGYEEHPYGFY MAG+
Subjt:  REMFGYEEHPYGFYAMAGI

XP_022850474.1 E3 ubiquitin-protein ligase MARCH1-like isoform X3 [Olea europaea var. sylvestris]2.8e-3460Show/hide
Query:  QTNHNVVYALTPE----EKILIAPCHCKGTQKYVHRSCL-IIGGPQRRLCFCSLYRVQAMFVLRANVLLIAWWLRLKFQFLVARDHAGVFAMCFEQIVAF
        QTNHN  YALT +     + LIAPCHCKGTQK+VHRSCL      +    F      +AMF+LRANV    WWLRLKFQ LV RDHA +F +  + IVAF
Subjt:  QTNHNVVYALTPE----EKILIAPCHCKGTQKYVHRSCL-IIGGPQRRLCFCSLYRVQAMFVLRANVLLIAWWLRLKFQFLVARDHAGVFAMCFEQIVAF

Query:  LGVLVYKFYGEELREMFGYEEHPYGFYAMAGILRLPTNSLL--FILLYIC
        LGVLVYKFYGEELREMFGYEEHPYGFY MA +L +    LL  F +  IC
Subjt:  LGVLVYKFYGEELREMFGYEEHPYGFYAMAGILRLPTNSLL--FILLYIC

TrEMBL top hitse value%identityAlignment
A0A2K1Z037 RING-CH-type domain-containing protein1.1e-3469.75Show/hide
Query:  LTPEEKILIAPCHCKGTQKYVHRSCL-IIGGPQRRLCFCSLYRVQAMFVLRANVLLIAWWLRLKFQFLVARDHAGVFAMCFEQIVAFLGVLVYKFYGEEL
        L  E + LIAPCHCKGTQKYVHRSCL      +    F      +AMFVLRANV    WWLRLKFQFLVARDHA +F +  + IVAFLGVLVYKFYGEEL
Subjt:  LTPEEKILIAPCHCKGTQKYVHRSCL-IIGGPQRRLCFCSLYRVQAMFVLRANVLLIAWWLRLKFQFLVARDHAGVFAMCFEQIVAFLGVLVYKFYGEEL

Query:  REMFGYEEHPYGFYAMAGI
        REMFGYEEHPYGFY MAGI
Subjt:  REMFGYEEHPYGFYAMAGI

A0A2K1Z038 RING-CH-type domain-containing protein2.3e-3468.91Show/hide
Query:  LTPEEKILIAPCHCKGTQKYVHRSCL-IIGGPQRRLCFCSLYRVQAMFVLRANVLLIAWWLRLKFQFLVARDHAGVFAMCFEQIVAFLGVLVYKFYGEEL
        L  E + LIAPCHCKGTQKYVHRSCL      +    F      +AMFVLRANV    WWLRLKFQFLVARDHA +F +  + IVAFLGVLVYKFYGEEL
Subjt:  LTPEEKILIAPCHCKGTQKYVHRSCL-IIGGPQRRLCFCSLYRVQAMFVLRANVLLIAWWLRLKFQFLVARDHAGVFAMCFEQIVAFLGVLVYKFYGEEL

Query:  REMFGYEEHPYGFYAMAGI
        REMFGYEEHPYGFY MAG+
Subjt:  REMFGYEEHPYGFYAMAGI

A0A5B7AJN5 Putative E3 ubiquitin-protein ligase MARCH11.4e-3456.88Show/hide
Query:  NHNVVYALTPEEKI--------LIAPCHCKGTQKYVHRSCL-IIGGPQRRLCFCSLYRVQAMFVLRANVLLIAWWLRLKFQFLVARDHAGVFAMCFEQIV
        N N+V A  P+ +I        LIAPCHCKGTQKYVHRSCL      +    F      +A+F+LRANV    WWLRLKFQFLVARDHA +F +  + IV
Subjt:  NHNVVYALTPEEKI--------LIAPCHCKGTQKYVHRSCL-IIGGPQRRLCFCSLYRVQAMFVLRANVLLIAWWLRLKFQFLVARDHAGVFAMCFEQIV

Query:  AFLGVLVYKFYGEELREMFGYEEHPYGFYAMAG-ILRLPTNSLLFILLYICIEHFSVSEC
        AFLGVLVYKFYGEELREMFGYEEHPYGFY MAG  L    NS+  ++L+I      V +C
Subjt:  AFLGVLVYKFYGEELREMFGYEEHPYGFYAMAG-ILRLPTNSLLFILLYICIEHFSVSEC

A0A5D3DCW4 E3 ubiquitin-protein ligase MARCH8 isoform X15.2e-3471.68Show/hide
Query:  LIAPCHCKGTQKYVHRSCL-IIGGPQRRLCFCSLYRVQAMFVLRANVLLIAWWLRLKFQFLVARDHAGVFAMCFEQIVAFLGVLVYKFYGEELREMFGYE
        LIAPCHCKGTQKYVHRSCL      +    F      +AMFVLRANV    WWLRLKFQFLVARDHA +F +  + IVAFLGVLVYKFYGEELREMFGYE
Subjt:  LIAPCHCKGTQKYVHRSCL-IIGGPQRRLCFCSLYRVQAMFVLRANVLLIAWWLRLKFQFLVARDHAGVFAMCFEQIVAFLGVLVYKFYGEELREMFGYE

Query:  EHPYGFYAMAGIL
        EHPYGFYAMA I+
Subjt:  EHPYGFYAMAGIL

A0A7J0GLR5 RING/FYVE/PHD zinc finger superfamily protein5.2e-3463.91Show/hide
Query:  NHNVVYALTPEEKI--------LIAPCHCKGTQKYVHRSCL-IIGGPQRRLCFCSLYRVQAMFVLRANVLLIAWWLRLKFQFLVARDHAGVFAMCFEQIV
        N N+V A  P+ +I        LIAPCHCKGTQKYVHRSCL      +    F      +A+FVLRANV    WWLRLKFQFLVARDHA +F +  + IV
Subjt:  NHNVVYALTPEEKI--------LIAPCHCKGTQKYVHRSCL-IIGGPQRRLCFCSLYRVQAMFVLRANVLLIAWWLRLKFQFLVARDHAGVFAMCFEQIV

Query:  AFLGVLVYKFYGEELREMFGYEEHPYGFYAMAG
        AFLGVLVYKFYGEELREMFGYEEHPYGFY MAG
Subjt:  AFLGVLVYKFYGEELREMFGYEEHPYGFYAMAG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G50440.1 RING/FYVE/PHD zinc finger superfamily protein2.2e-3259.23Show/hide
Query:  LIAPCHCKGTQKYVHRSCL-IIGGPQRRLCFCSLYRVQAMFVLRANVLLIAWWLRLKFQFLVARDHAGVFAMCFEQIVAFLGVLVYKFYGEELREMFGYE
        LIAPC+CKGTQK+VHRSCL      +    F      +A F LRANV    WWLRL+FQ LVARDHA +F +  + IVAFLG+LVYKFYGEELREMFGYE
Subjt:  LIAPCHCKGTQKYVHRSCL-IIGGPQRRLCFCSLYRVQAMFVLRANVLLIAWWLRLKFQFLVARDHAGVFAMCFEQIVAFLGVLVYKFYGEELREMFGYE

Query:  EHPYGFYAMAGILRLPTNSLL--FILLYIC
        EHPYGFY +A +L +    LL  F +  IC
Subjt:  EHPYGFYAMAGILRLPTNSLL--FILLYIC

AT1G50440.2 RING/FYVE/PHD zinc finger superfamily protein2.2e-3259.23Show/hide
Query:  LIAPCHCKGTQKYVHRSCL-IIGGPQRRLCFCSLYRVQAMFVLRANVLLIAWWLRLKFQFLVARDHAGVFAMCFEQIVAFLGVLVYKFYGEELREMFGYE
        LIAPC+CKGTQK+VHRSCL      +    F      +A F LRANV    WWLRL+FQ LVARDHA +F +  + IVAFLG+LVYKFYGEELREMFGYE
Subjt:  LIAPCHCKGTQKYVHRSCL-IIGGPQRRLCFCSLYRVQAMFVLRANVLLIAWWLRLKFQFLVARDHAGVFAMCFEQIVAFLGVLVYKFYGEELREMFGYE

Query:  EHPYGFYAMAGILRLPTNSLL--FILLYIC
        EHPYGFY +A +L +    LL  F +  IC
Subjt:  EHPYGFYAMAGILRLPTNSLL--FILLYIC

AT1G50440.3 RING/FYVE/PHD zinc finger superfamily protein2.2e-3259.23Show/hide
Query:  LIAPCHCKGTQKYVHRSCL-IIGGPQRRLCFCSLYRVQAMFVLRANVLLIAWWLRLKFQFLVARDHAGVFAMCFEQIVAFLGVLVYKFYGEELREMFGYE
        LIAPC+CKGTQK+VHRSCL      +    F      +A F LRANV    WWLRL+FQ LVARDHA +F +  + IVAFLG+LVYKFYGEELREMFGYE
Subjt:  LIAPCHCKGTQKYVHRSCL-IIGGPQRRLCFCSLYRVQAMFVLRANVLLIAWWLRLKFQFLVARDHAGVFAMCFEQIVAFLGVLVYKFYGEELREMFGYE

Query:  EHPYGFYAMAGILRLPTNSLL--FILLYIC
        EHPYGFY +A +L +    LL  F +  IC
Subjt:  EHPYGFYAMAGILRLPTNSLL--FILLYIC

AT2G22120.1 RING/FYVE/PHD zinc finger superfamily protein1.7e-0833.33Show/hide
Query:  LTPEEKILIAPCHCKGTQKYVHRSCL-IIGGPQRRLCFCSLYRVQAMFVLRANVLLIAWWLRLKFQFLVARDHAGVFAMCFEQIVAFLGVLVY---KFYG
        L  + +  IAPC CKGT KYVHR CL      +    F      +A + LR +      W  LKF+F V RD   +F +  + ++A L  +VY    +  
Subjt:  LTPEEKILIAPCHCKGTQKYVHRSCL-IIGGPQRRLCFCSLYRVQAMFVLRANVLLIAWWLRLKFQFLVARDHAGVFAMCFEQIVAFLGVLVY---KFYG

Query:  EELREMFGYEEHPYGFYAMAGIL
          LR ++G++     FY M G L
Subjt:  EELREMFGYEEHPYGFYAMAGIL

AT2G22120.2 RING/FYVE/PHD zinc finger superfamily protein1.7e-0833.33Show/hide
Query:  LTPEEKILIAPCHCKGTQKYVHRSCL-IIGGPQRRLCFCSLYRVQAMFVLRANVLLIAWWLRLKFQFLVARDHAGVFAMCFEQIVAFLGVLVY---KFYG
        L  + +  IAPC CKGT KYVHR CL      +    F      +A + LR +      W  LKF+F V RD   +F +  + ++A L  +VY    +  
Subjt:  LTPEEKILIAPCHCKGTQKYVHRSCL-IIGGPQRRLCFCSLYRVQAMFVLRANVLLIAWWLRLKFQFLVARDHAGVFAMCFEQIVAFLGVLVY---KFYG

Query:  EELREMFGYEEHPYGFYAMAGIL
          LR ++G++     FY M G L
Subjt:  EELREMFGYEEHPYGFYAMAGIL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGACCAACCACAATGTCGTATATGCCTTGACACCGGAGGAGAAGATTTTAATTGCTCCATGCCACTGCAAAGGCACTCAAAAGTATGTCCATAGATCATGTCTGAT
AATTGGAGGTCCACAAAGGAGGCTTTGCTTTTGCTCATTGTACAGAGTGCAAGCTATGTTCGTGTTACGTGCAAATGTCCTCCTGATCGCTTGGTGGTTGAGACTGAAGT
TTCAATTTCTTGTTGCTAGGGACCATGCAGGGGTCTTCGCTATGTGCTTTGAACAGATTGTGGCATTCTTGGGGGTGTTGGTGTACAAATTCTACGGAGAGGAACTAAGG
GAAATGTTTGGTTATGAAGAACACCCATATGGGTTCTATGCCATGGCCGGTATACTGAGGCTGCCAACTAATTCCTTACTTTTTATTCTTCTTTATATATGTATTGAACA
TTTTAGTGTAAGTGAATGTTCTCACACAATATTTTGGTTTCAATCGATTAGAAGAATTTAG
mRNA sequenceShow/hide mRNA sequence
GTTAAATGGGTAACTTGATTTTCTATGCATATGATTTCATGTCAACGTGATTGCTTCTTCTTTCCCAAATTATGCGGTTCGTTGGTTTCCATGTAAATGGTCAACCTGAA
CAATAGCTCGGCGATGACTATGCAAGTCTGACTCAATGACGGAGGCTTCACACCATGCAACTGGTACCAAAATAATGATGAAATACAGATGATATTCTGGAACGTGCGCC
GCCATTTTAAGTCAATGGATTTTCTGCCACAGCAGTGGGATCATCATCCTCTGCTGAGATTATAGCTATAGGGAGAGAGAGCTCTGGTAGTGATGATGATTCACACAATC
TTTAATGTTGATGAAACAGTCATCTGGTGAATGCAGACCAACCACAATGTCGTATATGCCTTGACACCGGAGGAGAAGATTTTAATTGCTCCATGCCACTGCAAAGGCAC
TCAAAAGTATGTCCATAGATCATGTCTGATAATTGGAGGTCCACAAAGGAGGCTTTGCTTTTGCTCATTGTACAGAGTGCAAGCTATGTTCGTGTTACGTGCAAATGTCC
TCCTGATCGCTTGGTGGTTGAGACTGAAGTTTCAATTTCTTGTTGCTAGGGACCATGCAGGGGTCTTCGCTATGTGCTTTGAACAGATTGTGGCATTCTTGGGGGTGTTG
GTGTACAAATTCTACGGAGAGGAACTAAGGGAAATGTTTGGTTATGAAGAACACCCATATGGGTTCTATGCCATGGCCGGTATACTGAGGCTGCCAACTAATTCCTTACT
TTTTATTCTTCTTTATATATGTATTGAACATTTTAGTGTAAGTGAATGTTCTCACACAATATTTTGGTTTCAATCGATTAGAAGAATTTAG
Protein sequenceShow/hide protein sequence
MQTNHNVVYALTPEEKILIAPCHCKGTQKYVHRSCLIIGGPQRRLCFCSLYRVQAMFVLRANVLLIAWWLRLKFQFLVARDHAGVFAMCFEQIVAFLGVLVYKFYGEELR
EMFGYEEHPYGFYAMAGILRLPTNSLLFILLYICIEHFSVSECSHTIFWFQSIRRI