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Carg27943 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg27943
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionRING-CH-type domain-containing protein
Genome locationCarg_Chr14:9153899..9154674
RNA-Seq ExpressionCarg27943
SyntenyCarg27943
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6581761.1 E3 ubiquitin-protein ligase MARCHF8, partial [Cucurbita argyrosperma subsp. sororia]3.2e-4085.58Show/hide
Query:  REGFAFAHCTECRAMFVLRANVPPDRWWLRLKFQFLVARDHAFIFIIVQLIVAFLGVLVYKFYGEELREMFGYEEHPYGFYAMAGILRLPTNSLL--FIL
        +EGFAFAHCTECRAMFVLRANVPPDRWWLRLKFQFLVARDHAFIFIIVQLIVAFLGVLVYKFYGEELREMFGYEEHPYGFYAMA +L +    LL  F +
Subjt:  REGFAFAHCTECRAMFVLRANVPPDRWWLRLKFQFLVARDHAFIFIIVQLIVAFLGVLVYKFYGEELREMFGYEEHPYGFYAMAGILRLPTNSLL--FIL

Query:  LYIC
          IC
Subjt:  LYIC

KAG7018208.1 hypothetical protein SDJN02_20076, partial [Cucurbita argyrosperma subsp. argyrosperma]1.3e-60100Show/hide
Query:  MSIDHVLILAVRKREGFAFAHCTECRAMFVLRANVPPDRWWLRLKFQFLVARDHAFIFIIVQLIVAFLGVLVYKFYGEELREMFGYEEHPYGFYAMAGIL
        MSIDHVLILAVRKREGFAFAHCTECRAMFVLRANVPPDRWWLRLKFQFLVARDHAFIFIIVQLIVAFLGVLVYKFYGEELREMFGYEEHPYGFYAMAGIL
Subjt:  MSIDHVLILAVRKREGFAFAHCTECRAMFVLRANVPPDRWWLRLKFQFLVARDHAFIFIIVQLIVAFLGVLVYKFYGEELREMFGYEEHPYGFYAMAGIL

Query:  RLPTNSLLFILLYICIEHF
        RLPTNSLLFILLYICIEHF
Subjt:  RLPTNSLLFILLYICIEHF

XP_008465095.1 PREDICTED: uncharacterized protein LOC103502787 isoform X2 [Cucumis melo]3.8e-4196.55Show/hide
Query:  REGFAFAHCTECRAMFVLRANVPPDRWWLRLKFQFLVARDHAFIFIIVQLIVAFLGVLVYKFYGEELREMFGYEEHPYGFYAMAGIL
        +EGFAFAHCTECRAMFVLRANVPPDRWWLRLKFQFLVARDHAFIFIIVQLIVAFLGVLVYKFYGEELREMFGYEEHPYGFYAMA I+
Subjt:  REGFAFAHCTECRAMFVLRANVPPDRWWLRLKFQFLVARDHAFIFIIVQLIVAFLGVLVYKFYGEELREMFGYEEHPYGFYAMAGIL

XP_024184820.1 E3 ubiquitin-protein ligase MARCHF8 isoform X2 [Rosa chinensis]3.8e-4179.44Show/hide
Query:  REGFAFAHCTECRAMFVLRANVPPDRWWLRLKFQFLVARDHAFIFIIVQLIVAFLGVLVYKFYGEELREMFGYEEHPYGFYAMAGILR--LPTNSLLFIL
        +EGFAFAHCTECR +F+LRANVPPDRWWLRLKFQFLVARDHAFIFIIVQLIVAFLGV+VYKFYGEELREMFGYEEHPYGFY MAG+L    P   L +I+
Subjt:  REGFAFAHCTECRAMFVLRANVPPDRWWLRLKFQFLVARDHAFIFIIVQLIVAFLGVLVYKFYGEELREMFGYEEHPYGFYAMAGILR--LPTNSLLFIL

Query:  LYICIEH
           C +H
Subjt:  LYICIEH

XP_031738715.1 uncharacterized protein LOC101221632 isoform X2 [Cucumis sativus]3.8e-4196.55Show/hide
Query:  REGFAFAHCTECRAMFVLRANVPPDRWWLRLKFQFLVARDHAFIFIIVQLIVAFLGVLVYKFYGEELREMFGYEEHPYGFYAMAGIL
        +EGFAFAHCTECRAMFVLRANVPPDRWWLRLKFQFLVARDHAFIFIIVQLIVAFLGVLVYKFYGEELREMFGYEEHPYGFYAMA I+
Subjt:  REGFAFAHCTECRAMFVLRANVPPDRWWLRLKFQFLVARDHAFIFIIVQLIVAFLGVLVYKFYGEELREMFGYEEHPYGFYAMAGIL

TrEMBL top hitse value%identityAlignment
A0A1S3CN31 uncharacterized protein LOC103502787 isoform X21.9e-4196.55Show/hide
Query:  REGFAFAHCTECRAMFVLRANVPPDRWWLRLKFQFLVARDHAFIFIIVQLIVAFLGVLVYKFYGEELREMFGYEEHPYGFYAMAGIL
        +EGFAFAHCTECRAMFVLRANVPPDRWWLRLKFQFLVARDHAFIFIIVQLIVAFLGVLVYKFYGEELREMFGYEEHPYGFYAMA I+
Subjt:  REGFAFAHCTECRAMFVLRANVPPDRWWLRLKFQFLVARDHAFIFIIVQLIVAFLGVLVYKFYGEELREMFGYEEHPYGFYAMAGIL

A0A1S3CN40 E3 ubiquitin-protein ligase MARCH8 isoform X11.6e-4085.58Show/hide
Query:  REGFAFAHCTECRAMFVLRANVPPDRWWLRLKFQFLVARDHAFIFIIVQLIVAFLGVLVYKFYGEELREMFGYEEHPYGFYAMAGILRLPTNSLL--FIL
        +EGFAFAHCTECRAMFVLRANVPPDRWWLRLKFQFLVARDHAFIFIIVQLIVAFLGVLVYKFYGEELREMFGYEEHPYGFYAMA +L +    LL  F +
Subjt:  REGFAFAHCTECRAMFVLRANVPPDRWWLRLKFQFLVARDHAFIFIIVQLIVAFLGVLVYKFYGEELREMFGYEEHPYGFYAMAGILRLPTNSLL--FIL

Query:  LYIC
          IC
Subjt:  LYIC

A0A5B7AJN5 Putative E3 ubiquitin-protein ligase MARCH11.2e-4083.33Show/hide
Query:  REGFAFAHCTECRAMFVLRANVPPDRWWLRLKFQFLVARDHAFIFIIVQLIVAFLGVLVYKFYGEELREMFGYEEHPYGFYAMAG-ILRLPTNSLLFILL
        +EGFAFAHCTECRA+F+LRANVPPDRWWLRLKFQFLVARDHAFIF+IVQLIVAFLGVLVYKFYGEELREMFGYEEHPYGFY MAG  L    NS+  ++L
Subjt:  REGFAFAHCTECRAMFVLRANVPPDRWWLRLKFQFLVARDHAFIFIIVQLIVAFLGVLVYKFYGEELREMFGYEEHPYGFYAMAG-ILRLPTNSLLFILL

Query:  YI
        +I
Subjt:  YI

A0A5D3DCW4 E3 ubiquitin-protein ligase MARCH8 isoform X11.9e-4196.55Show/hide
Query:  REGFAFAHCTECRAMFVLRANVPPDRWWLRLKFQFLVARDHAFIFIIVQLIVAFLGVLVYKFYGEELREMFGYEEHPYGFYAMAGIL
        +EGFAFAHCTECRAMFVLRANVPPDRWWLRLKFQFLVARDHAFIFIIVQLIVAFLGVLVYKFYGEELREMFGYEEHPYGFYAMA I+
Subjt:  REGFAFAHCTECRAMFVLRANVPPDRWWLRLKFQFLVARDHAFIFIIVQLIVAFLGVLVYKFYGEELREMFGYEEHPYGFYAMAGIL

A0A6J1IX90 E3 ubiquitin-protein ligase MARCH8-like1.6e-4085.58Show/hide
Query:  REGFAFAHCTECRAMFVLRANVPPDRWWLRLKFQFLVARDHAFIFIIVQLIVAFLGVLVYKFYGEELREMFGYEEHPYGFYAMAGILRLPTNSLL--FIL
        +EGFAFAHCTECRAMFVLRANVPPDRWWLRLKFQFLVARDHAFIFIIVQLIVAFLGVLVYKFYGEELREMFGYEEHPYGFYAMA +L +    LL  F +
Subjt:  REGFAFAHCTECRAMFVLRANVPPDRWWLRLKFQFLVARDHAFIFIIVQLIVAFLGVLVYKFYGEELREMFGYEEHPYGFYAMAGILRLPTNSLL--FIL

Query:  LYIC
          IC
Subjt:  LYIC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G50440.1 RING/FYVE/PHD zinc finger superfamily protein1.1e-3875Show/hide
Query:  REGFAFAHCTECRAMFVLRANVPPDRWWLRLKFQFLVARDHAFIFIIVQLIVAFLGVLVYKFYGEELREMFGYEEHPYGFYAMAGILRLPTNSLL--FIL
        +EGFAF+HCTECRA F LRANVP DRWWLRL+FQ LVARDHAFIFI VQ+IVAFLG+LVYKFYGEELREMFGYEEHPYGFY +A +L +    LL  F +
Subjt:  REGFAFAHCTECRAMFVLRANVPPDRWWLRLKFQFLVARDHAFIFIIVQLIVAFLGVLVYKFYGEELREMFGYEEHPYGFYAMAGILRLPTNSLL--FIL

Query:  LYIC
          IC
Subjt:  LYIC

AT1G50440.2 RING/FYVE/PHD zinc finger superfamily protein1.1e-3875Show/hide
Query:  REGFAFAHCTECRAMFVLRANVPPDRWWLRLKFQFLVARDHAFIFIIVQLIVAFLGVLVYKFYGEELREMFGYEEHPYGFYAMAGILRLPTNSLL--FIL
        +EGFAF+HCTECRA F LRANVP DRWWLRL+FQ LVARDHAFIFI VQ+IVAFLG+LVYKFYGEELREMFGYEEHPYGFY +A +L +    LL  F +
Subjt:  REGFAFAHCTECRAMFVLRANVPPDRWWLRLKFQFLVARDHAFIFIIVQLIVAFLGVLVYKFYGEELREMFGYEEHPYGFYAMAGILRLPTNSLL--FIL

Query:  LYIC
          IC
Subjt:  LYIC

AT1G50440.3 RING/FYVE/PHD zinc finger superfamily protein1.1e-3875Show/hide
Query:  REGFAFAHCTECRAMFVLRANVPPDRWWLRLKFQFLVARDHAFIFIIVQLIVAFLGVLVYKFYGEELREMFGYEEHPYGFYAMAGILRLPTNSLL--FIL
        +EGFAF+HCTECRA F LRANVP DRWWLRL+FQ LVARDHAFIFI VQ+IVAFLG+LVYKFYGEELREMFGYEEHPYGFY +A +L +    LL  F +
Subjt:  REGFAFAHCTECRAMFVLRANVPPDRWWLRLKFQFLVARDHAFIFIIVQLIVAFLGVLVYKFYGEELREMFGYEEHPYGFYAMAGILRLPTNSLL--FIL

Query:  LYIC
          IC
Subjt:  LYIC

AT2G22120.1 RING/FYVE/PHD zinc finger superfamily protein3.6e-1344.44Show/hide
Query:  REGFAFAHCTECRAMFVLRANVPPDRWWLRLKFQFLVARDHAFIFIIVQLIVAFLGVLVY---KFYGEELREMFGYEEHPYGFYAMAGIL
        +EGFAFAHCT C+A + LR +   DR W  LKF+F V RD   IF+ VQL++A L  +VY    +    LR ++G++     FY M G L
Subjt:  REGFAFAHCTECRAMFVLRANVPPDRWWLRLKFQFLVARDHAFIFIIVQLIVAFLGVLVY---KFYGEELREMFGYEEHPYGFYAMAGIL

AT2G22120.2 RING/FYVE/PHD zinc finger superfamily protein3.6e-1344.44Show/hide
Query:  REGFAFAHCTECRAMFVLRANVPPDRWWLRLKFQFLVARDHAFIFIIVQLIVAFLGVLVY---KFYGEELREMFGYEEHPYGFYAMAGIL
        +EGFAFAHCT C+A + LR +   DR W  LKF+F V RD   IF+ VQL++A L  +VY    +    LR ++G++     FY M G L
Subjt:  REGFAFAHCTECRAMFVLRANVPPDRWWLRLKFQFLVARDHAFIFIIVQLIVAFLGVLVY---KFYGEELREMFGYEEHPYGFYAMAGIL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAATAGATCATGTCTTGATATTGGCGGTCCGCAAAAGGGAGGGCTTTGCTTTTGCTCATTGTACAGAGTGCAGAGCTATGTTCGTGTTACGTGCAAATGTCCCTCC
TGATCGCTGGTGGTTGAGACTGAAGTTTCAATTTCTTGTTGCTAGGGACCATGCGTTCATTTTCATTATTGTTCAACTGATTGTGGCATTCTTGGGGGTGTTGGTGTACA
AATTCTACGGAGAGGAACTAAGGGAAATGTTTGGTTATGAAGAACACCCATATGGGTTCTATGCCATGGCCGGTATACTGAGGCTGCCAACTAATTCCTTACTTTTTATT
CTTCTTTATATATGTATTGAACATTTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCAATAGATCATGTCTTGATATTGGCGGTCCGCAAAAGGGAGGGCTTTGCTTTTGCTCATTGTACAGAGTGCAGAGCTATGTTCGTGTTACGTGCAAATGTCCCTCC
TGATCGCTGGTGGTTGAGACTGAAGTTTCAATTTCTTGTTGCTAGGGACCATGCGTTCATTTTCATTATTGTTCAACTGATTGTGGCATTCTTGGGGGTGTTGGTGTACA
AATTCTACGGAGAGGAACTAAGGGAAATGTTTGGTTATGAAGAACACCCATATGGGTTCTATGCCATGGCCGGTATACTGAGGCTGCCAACTAATTCCTTACTTTTTATT
CTTCTTTATATATGTATTGAACATTTTTAG
Protein sequenceShow/hide protein sequence
MSIDHVLILAVRKREGFAFAHCTECRAMFVLRANVPPDRWWLRLKFQFLVARDHAFIFIIVQLIVAFLGVLVYKFYGEELREMFGYEEHPYGFYAMAGILRLPTNSLLFI
LLYICIEHF