; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg27947 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg27947
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionHMG-Y-related protein A
Genome locationCarg_Chr15:5641369..5642071
RNA-Seq ExpressionCarg27947
SyntenyCarg27947
Gene Ontology termsGO:0006334 - nucleosome assembly (biological process)
GO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0016584 - nucleosome positioning (biological process)
GO:0030261 - chromosome condensation (biological process)
GO:0045910 - negative regulation of DNA recombination (biological process)
GO:0000786 - nucleosome (cellular component)
GO:0005730 - nucleolus (cellular component)
GO:0003690 - double-stranded DNA binding (molecular function)
GO:0008168 - methyltransferase activity (molecular function)
GO:0031492 - nucleosomal DNA binding (molecular function)
InterPro domainsIPR000116 - High mobility group protein HMGA
IPR005818 - Linker histone H1/H5, domain H15
IPR017956 - AT hook, DNA-binding motif
IPR031059 - High mobility group protein HMGA, plant
IPR036388 - Winged helix-like DNA-binding domain superfamily
IPR036390 - Winged helix DNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004150116.1 HMG-Y-related protein A [Cucumis sativus]1.4e-9092.47Show/hide
Query:  MGTEDQLNNPPQPPPPAPSLPHYPEMIMTAIEALNDKNGVSKTAITKQIESTYGDLPPAFTTLLAHHLDVMKQTGKLLFVKNNYMKPDPNAPPKRGRGRP
        M T+DQLNNPPQPPPPAPSLPHYPEMIM AI++LNDKNGVSK+AITKQIESTYGDLPPAFTTLL HHLDVMKQTG+LLF+KNNYMKPDPNAPPKRGRGRP
Subjt:  MGTEDQLNNPPQPPPPAPSLPHYPEMIMTAIEALNDKNGVSKTAITKQIESTYGDLPPAFTTLLAHHLDVMKQTGKLLFVKNNYMKPDPNAPPKRGRGRP

Query:  PKPKVPLPPGTVVPPPRPRGRPPKPKDPFAPISQPKKKTSTGSGRPRGRPPKSPKPAPTSAPPVAGPPRGRGRPPKVKPAVAPIGC
        PKPKVPLPPGTVV PPRPRGRPPKPKDPFAPISQPKKKT++GSGRPRGRPPK PKPAPTSAPPVAGPPRGRGRPPKVKPAVAP+GC
Subjt:  PKPKVPLPPGTVVPPPRPRGRPPKPKDPFAPISQPKKKTSTGSGRPRGRPPKSPKPAPTSAPPVAGPPRGRGRPPKVKPAVAPIGC

XP_008466945.1 PREDICTED: HMG-Y-related protein A [Cucumis melo]1.1e-9093.01Show/hide
Query:  MGTEDQLNNPPQPPPPAPSLPHYPEMIMTAIEALNDKNGVSKTAITKQIESTYGDLPPAFTTLLAHHLDVMKQTGKLLFVKNNYMKPDPNAPPKRGRGRP
        M T+DQLNNPPQPPPPAPSLPHYPEMIM AI++LNDKNGVSK+AITKQIESTYGDLPPAFTTLL HHLDVMKQTG+LLFVKNNYMKPDPNAPPKRGRGRP
Subjt:  MGTEDQLNNPPQPPPPAPSLPHYPEMIMTAIEALNDKNGVSKTAITKQIESTYGDLPPAFTTLLAHHLDVMKQTGKLLFVKNNYMKPDPNAPPKRGRGRP

Query:  PKPKVPLPPGTVVPPPRPRGRPPKPKDPFAPISQPKKKTSTGSGRPRGRPPKSPKPAPTSAPPVAGPPRGRGRPPKVKPAVAPIGC
        PKPKVPLPPGTVV PPRPRGRPPKPKDPFAPISQPKKKT++GSGRPRGRPPK PKPAPTSAPPVAGPPRGRGRPPKVKPAVAP+GC
Subjt:  PKPKVPLPPGTVVPPPRPRGRPPKPKDPFAPISQPKKKTSTGSGRPRGRPPKSPKPAPTSAPPVAGPPRGRGRPPKVKPAVAPIGC

XP_022938491.1 HMG-Y-related protein A [Cucurbita moschata]5.9e-97100Show/hide
Query:  MGTEDQLNNPPQPPPPAPSLPHYPEMIMTAIEALNDKNGVSKTAITKQIESTYGDLPPAFTTLLAHHLDVMKQTGKLLFVKNNYMKPDPNAPPKRGRGRP
        MGTEDQLNNPPQPPPPAPSLPHYPEMIMTAIEALNDKNGVSKTAITKQIESTYGDLPPAFTTLLAHHLDVMKQTGKLLFVKNNYMKPDPNAPPKRGRGRP
Subjt:  MGTEDQLNNPPQPPPPAPSLPHYPEMIMTAIEALNDKNGVSKTAITKQIESTYGDLPPAFTTLLAHHLDVMKQTGKLLFVKNNYMKPDPNAPPKRGRGRP

Query:  PKPKVPLPPGTVVPPPRPRGRPPKPKDPFAPISQPKKKTSTGSGRPRGRPPKSPKPAPTSAPPVAGPPRGRGRPPKVKPAVAPIGC
        PKPKVPLPPGTVVPPPRPRGRPPKPKDPFAPISQPKKKTSTGSGRPRGRPPKSPKPAPTSAPPVAGPPRGRGRPPKVKPAVAPIGC
Subjt:  PKPKVPLPPGTVVPPPRPRGRPPKPKDPFAPISQPKKKTSTGSGRPRGRPPKSPKPAPTSAPPVAGPPRGRGRPPKVKPAVAPIGC

XP_022973541.1 HMG-Y-related protein A-like [Cucurbita maxima]1.2e-9498.39Show/hide
Query:  MGTEDQLNNPPQPPPPAPSLPHYPEMIMTAIEALNDKNGVSKTAITKQIESTYGDLPPAFTTLLAHHLDVMKQTGKLLFVKNNYMKPDPNAPPKRGRGRP
        M TEDQLNNPPQPPPPAPSLPHYPEMIMTAIEALND NGVSKTAITKQIES YGDLPPAFTTLLAHHLDVMKQTGKLLFVKNNYMKPDPNAPPKRGRGRP
Subjt:  MGTEDQLNNPPQPPPPAPSLPHYPEMIMTAIEALNDKNGVSKTAITKQIESTYGDLPPAFTTLLAHHLDVMKQTGKLLFVKNNYMKPDPNAPPKRGRGRP

Query:  PKPKVPLPPGTVVPPPRPRGRPPKPKDPFAPISQPKKKTSTGSGRPRGRPPKSPKPAPTSAPPVAGPPRGRGRPPKVKPAVAPIGC
        PKPKVPLPPGTVVPPPRPRGRPPKPKDPFAPISQPKKKTSTGSGRPRGRPPKSPKPAPTSAPPVAGPPRGRGRPPKVKPAVAPIGC
Subjt:  PKPKVPLPPGTVVPPPRPRGRPPKPKDPFAPISQPKKKTSTGSGRPRGRPPKSPKPAPTSAPPVAGPPRGRGRPPKVKPAVAPIGC

XP_023550058.1 HMG-Y-related protein A [Cucurbita pepo subsp. pepo]6.5e-9699.46Show/hide
Query:  MGTEDQLNNPPQPPPPAPSLPHYPEMIMTAIEALNDKNGVSKTAITKQIESTYGDLPPAFTTLLAHHLDVMKQTGKLLFVKNNYMKPDPNAPPKRGRGRP
        M TEDQLNNPPQPPPPAPSLPHYPEMIMTAIEALNDKNGVSKTAITKQIESTYGDLPPAFTTLLAHHLDVMKQTGKLLFVKNNYMKPDPNAPPKRGRGRP
Subjt:  MGTEDQLNNPPQPPPPAPSLPHYPEMIMTAIEALNDKNGVSKTAITKQIESTYGDLPPAFTTLLAHHLDVMKQTGKLLFVKNNYMKPDPNAPPKRGRGRP

Query:  PKPKVPLPPGTVVPPPRPRGRPPKPKDPFAPISQPKKKTSTGSGRPRGRPPKSPKPAPTSAPPVAGPPRGRGRPPKVKPAVAPIGC
        PKPKVPLPPGTVVPPPRPRGRPPKPKDPFAPISQPKKKTSTGSGRPRGRPPKSPKPAPTSAPPVAGPPRGRGRPPKVKPAVAPIGC
Subjt:  PKPKVPLPPGTVVPPPRPRGRPPKPKDPFAPISQPKKKTSTGSGRPRGRPPKSPKPAPTSAPPVAGPPRGRGRPPKVKPAVAPIGC

TrEMBL top hitse value%identityAlignment
A0A0A0KPG4 H15 domain-containing protein6.8e-9192.47Show/hide
Query:  MGTEDQLNNPPQPPPPAPSLPHYPEMIMTAIEALNDKNGVSKTAITKQIESTYGDLPPAFTTLLAHHLDVMKQTGKLLFVKNNYMKPDPNAPPKRGRGRP
        M T+DQLNNPPQPPPPAPSLPHYPEMIM AI++LNDKNGVSK+AITKQIESTYGDLPPAFTTLL HHLDVMKQTG+LLF+KNNYMKPDPNAPPKRGRGRP
Subjt:  MGTEDQLNNPPQPPPPAPSLPHYPEMIMTAIEALNDKNGVSKTAITKQIESTYGDLPPAFTTLLAHHLDVMKQTGKLLFVKNNYMKPDPNAPPKRGRGRP

Query:  PKPKVPLPPGTVVPPPRPRGRPPKPKDPFAPISQPKKKTSTGSGRPRGRPPKSPKPAPTSAPPVAGPPRGRGRPPKVKPAVAPIGC
        PKPKVPLPPGTVV PPRPRGRPPKPKDPFAPISQPKKKT++GSGRPRGRPPK PKPAPTSAPPVAGPPRGRGRPPKVKPAVAP+GC
Subjt:  PKPKVPLPPGTVVPPPRPRGRPPKPKDPFAPISQPKKKTSTGSGRPRGRPPKSPKPAPTSAPPVAGPPRGRGRPPKVKPAVAPIGC

A0A1S3CSD8 HMG-Y-related protein A5.2e-9193.01Show/hide
Query:  MGTEDQLNNPPQPPPPAPSLPHYPEMIMTAIEALNDKNGVSKTAITKQIESTYGDLPPAFTTLLAHHLDVMKQTGKLLFVKNNYMKPDPNAPPKRGRGRP
        M T+DQLNNPPQPPPPAPSLPHYPEMIM AI++LNDKNGVSK+AITKQIESTYGDLPPAFTTLL HHLDVMKQTG+LLFVKNNYMKPDPNAPPKRGRGRP
Subjt:  MGTEDQLNNPPQPPPPAPSLPHYPEMIMTAIEALNDKNGVSKTAITKQIESTYGDLPPAFTTLLAHHLDVMKQTGKLLFVKNNYMKPDPNAPPKRGRGRP

Query:  PKPKVPLPPGTVVPPPRPRGRPPKPKDPFAPISQPKKKTSTGSGRPRGRPPKSPKPAPTSAPPVAGPPRGRGRPPKVKPAVAPIGC
        PKPKVPLPPGTVV PPRPRGRPPKPKDPFAPISQPKKKT++GSGRPRGRPPK PKPAPTSAPPVAGPPRGRGRPPKVKPAVAP+GC
Subjt:  PKPKVPLPPGTVVPPPRPRGRPPKPKDPFAPISQPKKKTSTGSGRPRGRPPKSPKPAPTSAPPVAGPPRGRGRPPKVKPAVAPIGC

A0A5D3E3W3 HMG-Y-related protein A5.2e-9193.01Show/hide
Query:  MGTEDQLNNPPQPPPPAPSLPHYPEMIMTAIEALNDKNGVSKTAITKQIESTYGDLPPAFTTLLAHHLDVMKQTGKLLFVKNNYMKPDPNAPPKRGRGRP
        M T+DQLNNPPQPPPPAPSLPHYPEMIM AI++LNDKNGVSK+AITKQIESTYGDLPPAFTTLL HHLDVMKQTG+LLFVKNNYMKPDPNAPPKRGRGRP
Subjt:  MGTEDQLNNPPQPPPPAPSLPHYPEMIMTAIEALNDKNGVSKTAITKQIESTYGDLPPAFTTLLAHHLDVMKQTGKLLFVKNNYMKPDPNAPPKRGRGRP

Query:  PKPKVPLPPGTVVPPPRPRGRPPKPKDPFAPISQPKKKTSTGSGRPRGRPPKSPKPAPTSAPPVAGPPRGRGRPPKVKPAVAPIGC
        PKPKVPLPPGTVV PPRPRGRPPKPKDPFAPISQPKKKT++GSGRPRGRPPK PKPAPTSAPPVAGPPRGRGRPPKVKPAVAP+GC
Subjt:  PKPKVPLPPGTVVPPPRPRGRPPKPKDPFAPISQPKKKTSTGSGRPRGRPPKSPKPAPTSAPPVAGPPRGRGRPPKVKPAVAPIGC

A0A6J1FDA7 HMG-Y-related protein A2.9e-97100Show/hide
Query:  MGTEDQLNNPPQPPPPAPSLPHYPEMIMTAIEALNDKNGVSKTAITKQIESTYGDLPPAFTTLLAHHLDVMKQTGKLLFVKNNYMKPDPNAPPKRGRGRP
        MGTEDQLNNPPQPPPPAPSLPHYPEMIMTAIEALNDKNGVSKTAITKQIESTYGDLPPAFTTLLAHHLDVMKQTGKLLFVKNNYMKPDPNAPPKRGRGRP
Subjt:  MGTEDQLNNPPQPPPPAPSLPHYPEMIMTAIEALNDKNGVSKTAITKQIESTYGDLPPAFTTLLAHHLDVMKQTGKLLFVKNNYMKPDPNAPPKRGRGRP

Query:  PKPKVPLPPGTVVPPPRPRGRPPKPKDPFAPISQPKKKTSTGSGRPRGRPPKSPKPAPTSAPPVAGPPRGRGRPPKVKPAVAPIGC
        PKPKVPLPPGTVVPPPRPRGRPPKPKDPFAPISQPKKKTSTGSGRPRGRPPKSPKPAPTSAPPVAGPPRGRGRPPKVKPAVAPIGC
Subjt:  PKPKVPLPPGTVVPPPRPRGRPPKPKDPFAPISQPKKKTSTGSGRPRGRPPKSPKPAPTSAPPVAGPPRGRGRPPKVKPAVAPIGC

A0A6J1I8X7 HMG-Y-related protein A-like6.0e-9598.39Show/hide
Query:  MGTEDQLNNPPQPPPPAPSLPHYPEMIMTAIEALNDKNGVSKTAITKQIESTYGDLPPAFTTLLAHHLDVMKQTGKLLFVKNNYMKPDPNAPPKRGRGRP
        M TEDQLNNPPQPPPPAPSLPHYPEMIMTAIEALND NGVSKTAITKQIES YGDLPPAFTTLLAHHLDVMKQTGKLLFVKNNYMKPDPNAPPKRGRGRP
Subjt:  MGTEDQLNNPPQPPPPAPSLPHYPEMIMTAIEALNDKNGVSKTAITKQIESTYGDLPPAFTTLLAHHLDVMKQTGKLLFVKNNYMKPDPNAPPKRGRGRP

Query:  PKPKVPLPPGTVVPPPRPRGRPPKPKDPFAPISQPKKKTSTGSGRPRGRPPKSPKPAPTSAPPVAGPPRGRGRPPKVKPAVAPIGC
        PKPKVPLPPGTVVPPPRPRGRPPKPKDPFAPISQPKKKTSTGSGRPRGRPPKSPKPAPTSAPPVAGPPRGRGRPPKVKPAVAPIGC
Subjt:  PKPKVPLPPGTVVPPPRPRGRPPKPKDPFAPISQPKKKTSTGSGRPRGRPPKSPKPAPTSAPPVAGPPRGRGRPPKVKPAVAPIGC

SwissProt top hitse value%identityAlignment
Q00423 HMG-Y-related protein A8.4e-4660.33Show/hide
Query:  MGTEDQLNNPPQPPPPAPSLPHYPEMIMTAIEALNDKNGVSKTAITKQIESTYGDLPPAFTTLLAHHLDVMKQTGKLLFVKNNYMKPDPNAPPKRGRGRP
        M TE+   N PQ      SLP YPEMI+  +EALN+ NG +K+AI+K IE+TYG+LP A  T+L  HL+ MK +G+L F +NNYMK DPNAPPKRGRGRP
Subjt:  MGTEDQLNNPPQPPPPAPSLPHYPEMIMTAIEALNDKNGVSKTAITKQIESTYGDLPPAFTTLLAHHLDVMKQTGKLLFVKNNYMKPDPNAPPKRGRGRP

Query:  PKPKVPLPPGTVVPPPRPRGRPPKPKDPFAPISQPKKKTSTGSGRPRGRPPKSPKPAPTSAPPVAGPPRGRGRPPKVKPAVAPI
        PKPK PLPPGTVV PPRPRGRP  PKDP AP   PK K + GSGRPRGRP K P+    +AP      R RGRPPKVKP +  +
Subjt:  PKPKVPLPPGTVVPPPRPRGRPPKPKDPFAPISQPKKKTSTGSGRPRGRPPKSPKPAPTSAPPVAGPPRGRGRPPKVKPAVAPI

Q10370 HMG-Y-related protein B (Fragment)1.9e-3759.87Show/hide
Query:  ALNDKNGVSKTAITKQIESTYGDLPPAFTTLLAHHLDVMKQTGKLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVPPPRPRGRPPKPKDPFAPI
        ALN+ +G +K+AI+K IE+TYG+LP    T+L  HL+ MK++G+L F +NNYMK DPNAPPKRGRGRPPKPKVPLPPGTVV PPRPRGRP  PKDP AP 
Subjt:  ALNDKNGVSKTAITKQIESTYGDLPPAFTTLLAHHLDVMKQTGKLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVPPPRPRGRPPKPKDPFAPI

Query:  SQPKKKTSTGSGRPRGRPPKSPKPAPTSAPPVAGPPRGRGRPPKVKPAVAPI
          PK K +  +GRPRGRP K  +     +P      R RGRPPKVKP +  +
Subjt:  SQPKKKTSTGSGRPRGRPPKSPKPAPTSAPPVAGPPRGRGRPPKVKPAVAPI

Q43386 HMG-Y-related protein A1.2e-4460.32Show/hide
Query:  PAPSLPHYPEMIMTAIEALNDKNGVSKTAITKQIESTYGDLPPAFTTLLAHHLDVMKQTGKLLFVKNNYMKPDPNAPPKRGRGRPPKPK---------VP
        P+ SLP YP+MIM AIE+LNDKNG +KT I K IEST   LPP+  TLL++HL+ MK+TG+L+ VKNNYMKPDP+APPKRGRGRPPK K           
Subjt:  PAPSLPHYPEMIMTAIEALNDKNGVSKTAITKQIESTYGDLPPAFTTLLAHHLDVMKQTGKLLFVKNNYMKPDPNAPPKRGRGRPPKPK---------VP

Query:  LPPGTVV--PPPRPRGRPPKPKDPFAPISQPKKKTSTGSGRPRGRPPKSPK------PAPTSAPPVAGPPRGRGRPPKVKP-AVAPIGC
        +   TVV   PPR RGRPPKPKDP  P   P++K  TGSGRPRGRPPK P+       AP  A    G  RGRGRPPKVKP  VAP+GC
Subjt:  LPPGTVV--PPPRPRGRPPKPKDPFAPISQPKKKTSTGSGRPRGRPPKSPK------PAPTSAPPVAGPPRGRGRPPKVKP-AVAPIGC

Q9FYS5 HMG-Y-related protein A3.4e-3151.1Show/hide
Query:  PAPSLPHYPEMIMTAIEALNDKNGVSKTAITKQIESTYGDLPPAFTTLLAHHLDVMKQTGKLLFVKNNYMKPD-PNAPPKRGRGRPPKPKVPLPPGTVVP
        P+P +P YPEMI+ AIE L+DK+G +K+AI+K IE  YG LPPA  +LL  HL  MK++G+L+F+KNNY +   P+APPKRGRGRPPK + P  P     
Subjt:  PAPSLPHYPEMIMTAIEALNDKNGVSKTAITKQIESTYGDLPPAFTTLLAHHLDVMKQTGKLLFVKNNYMKPD-PNAPPKRGRGRPPKPKVPLPPGTVVP

Query:  PP----RPRGRPPKPKDPFAPISQPKKKTSTGSGRPRGRPPKSPK------PAPTSAPPVAGP-----PRGRGRPPKVKPAV
         P    R RGRPPK K   +P+    K+ + G  +PRGRPPK  K      P+P+ AP  AG       RGRGRPPKV+PAV
Subjt:  PP----RPRGRPPKPKDPFAPISQPKKKTSTGSGRPRGRPPKSPK------PAPTSAPPVAGP-----PRGRGRPPKVKPAV

Q9M5W4 Histone H11.4e-0533.52Show/hide
Query:  SLPHYPEMIMTAIEALNDKNGVSKTAITKQIESTYGDLPPAFTTLLAHHLDVMKQTGKLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVPPPRP
        S P + EMI  AI  L ++ G S+ AI K +E  +  LP  F  LL  HL  +  +GKL+ VKN++  P   A P     +  KP +P P     P    
Subjt:  SLPHYPEMIMTAIEALNDKNGVSKTAITKQIESTYGDLPPAFTTLLAHHLDVMKQTGKLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVPPPRP

Query:  RGRPPKPKDPFA--------------PISQPKKKTSTGSGRPRGRPPKSPKPAPTSAPPVAGPPRGRGRP-PKVKPAVAPIG
         G  PK K   A              P ++PK KT   +G+P+    K  K A T+A  VA P + +  P  KVK   +P G
Subjt:  RGRPPKPKDPFA--------------PISQPKKKTSTGSGRPRGRPPKSPKPAPTSAPPVAGPPRGRGRP-PKVKPAVAPIG

Arabidopsis top hitse value%identityAlignment
AT1G14900.1 high mobility group A8.6e-4660.32Show/hide
Query:  PAPSLPHYPEMIMTAIEALNDKNGVSKTAITKQIESTYGDLPPAFTTLLAHHLDVMKQTGKLLFVKNNYMKPDPNAPPKRGRGRPPKPK---------VP
        P+ SLP YP+MIM AIE+LNDKNG +KT I K IEST   LPP+  TLL++HL+ MK+TG+L+ VKNNYMKPDP+APPKRGRGRPPK K           
Subjt:  PAPSLPHYPEMIMTAIEALNDKNGVSKTAITKQIESTYGDLPPAFTTLLAHHLDVMKQTGKLLFVKNNYMKPDPNAPPKRGRGRPPKPK---------VP

Query:  LPPGTVV--PPPRPRGRPPKPKDPFAPISQPKKKTSTGSGRPRGRPPKSPK------PAPTSAPPVAGPPRGRGRPPKVKP-AVAPIGC
        +   TVV   PPR RGRPPKPKDP  P   P++K  TGSGRPRGRPPK P+       AP  A    G  RGRGRPPKVKP  VAP+GC
Subjt:  LPPGTVV--PPPRPRGRPPKPKDPFAPISQPKKKTSTGSGRPRGRPPKSPK------PAPTSAPPVAGPPRGRGRPPKVKP-AVAPIGC

AT1G44191.1 ECA1 gametogenesis related family protein9.6e-0538.32Show/hide
Query:  PDPNAPPKRGRGRPPKPK-VPLPPGTVVPPPRPRGRPPKPKDPFAPISQPKK-----KTSTGSGRPRGRPP----KSPKPAPTSAPPVAGPPRGRGRPPK
        P P++PP   +  PP PK  P PP    PPP P+  PP P  P +P   PKK     K S    +P   PP      P P P+  PP   PPR +  PP 
Subjt:  PDPNAPPKRGRGRPPKPK-VPLPPGTVVPPPRPRGRPPKPKDPFAPISQPKK-----KTSTGSGRPRGRPP----KSPKPAPTSAPPVAGPPRGRGRPPK

Query:  VKPAVAP
         KP+  P
Subjt:  VKPAVAP

AT1G48620.1 high mobility group A57.6e-1033.79Show/hide
Query:  QLNNPPQPPPPAPSLPHYPEMIMTAIEALNDKNGVSKTAITKQIESTYGDLPPAFTTLLAHHLDVMKQTGKLLFVKNNY-MKPDPNAPP-----------
        Q    P PP P+ S P Y +MI TAI ALN+ +G SK AI++ IE  Y  +P A   LL HHL  +K +G L+ VK +Y +   P  PP           
Subjt:  QLNNPPQPPPPAPSLPHYPEMIMTAIEALNDKNGVSKTAITKQIESTYGDLPPAFTTLLAHHLDVMKQTGKLLFVKNNY-MKPDPNAPP-----------

Query:  -------------------------KRGRGRPPKPKVPLPPGTVVPPPRPRGRPPKPKDPFAPISQPKKKTSTGSGRPRGRPPKSP--KPAPTSAPPVAG
                                 KRGRGRPPK K    P  V P P   G+    +    P+S+P++         + +PP+ P     P   PP  G
Subjt:  -------------------------KRGRGRPPKPKVPLPPGTVVPPPRPRGRPPKPKDPFAPISQPKKKTSTGSGRPRGRPPKSP--KPAPTSAPPVAG

Query:  PPRGRGRPPKVKPAVAPIG
         PR  G  P VKPA +  G
Subjt:  PPRGRGRPPKVKPAVAPIG

AT3G18035.1 winged-helix DNA-binding transcription factor family protein2.4e-0835.47Show/hide
Query:  PQPP----PPAPSLPH--YPEMIMTAIEALNDKNGVSKTAITKQIESTYGDLPPAFTTLLAHHLDVMKQTGKLLFVKNNYMKPDPNAPP--------KRG
        PQP      P  S+PH  Y EMI  AI ALN+ +G SK AI++ IE  Y  L  A   LL HHL  +K +G L  VK +Y     + PP           
Subjt:  PQPP----PPAPSLPH--YPEMIMTAIEALNDKNGVSKTAITKQIESTYGDLPPAFTTLLAHHLDVMKQTGKLLFVKNNYMKPDPNAPP--------KRG

Query:  RGRP-PKPKV-------PLPPGTVVPP-PRPRGRPPKPKDPF--APISQ-PKKKTSTGSGRPRGRPPKSPKPAPTSAPPVAGPPRGRGRPPK---VKPAV
        +G   P+ ++       P+  G+   P  R RGRPPKPK      P+ Q P       +G+P     +   P P   P      RG GRP K     PA 
Subjt:  RGRP-PKPKV-------PLPPGTVVPP-PRPRGRPPKPKDPF--APISQ-PKKKTSTGSGRPRGRPPKSPKPAPTSAPPVAGPPRGRGRPPK---VKPAV

Query:  API
        API
Subjt:  API


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCACCGAAGACCAGCTCAACAACCCCCCTCAACCCCCTCCTCCGGCTCCTTCTCTCCCTCACTACCCCGAGATGATTATGACAGCGATCGAAGCTCTGAACGACAA
AAACGGAGTGAGCAAAACGGCGATAACGAAGCAAATCGAGTCCACATACGGCGATCTGCCCCCTGCTTTCACTACGCTTCTCGCTCACCACTTAGACGTCATGAAGCAAA
CAGGCAAACTCCTCTTCGTCAAAAACAACTACATGAAGCCTGATCCCAACGCACCGCCCAAGCGTGGCCGTGGCCGCCCTCCCAAGCCTAAAGTCCCTCTTCCGCCAGGC
ACCGTCGTCCCTCCACCTCGCCCACGTGGCCGTCCTCCCAAACCCAAAGATCCATTCGCTCCCATTTCGCAGCCGAAGAAGAAAACCTCGACGGGAAGTGGAAGGCCACG
TGGCCGCCCCCCGAAGTCCCCGAAACCTGCGCCAACGTCTGCTCCTCCTGTCGCCGGCCCCCCCAGAGGCAGAGGGCGGCCACCGAAGGTTAAGCCGGCGGTGGCCCCCA
TTGGGTGTTAA
mRNA sequenceShow/hide mRNA sequence
TACAGTGTTTCTCTCTCAACTCTCTCTCTAAAATCTTATCTGTCCTCGGTCTCCGCCGCCGCCATGGGCACCGAAGACCAGCTCAACAACCCCCCTCAACCCCCTCCTCC
GGCTCCTTCTCTCCCTCACTACCCCGAGATGATTATGACAGCGATCGAAGCTCTGAACGACAAAAACGGAGTGAGCAAAACGGCGATAACGAAGCAAATCGAGTCCACAT
ACGGCGATCTGCCCCCTGCTTTCACTACGCTTCTCGCTCACCACTTAGACGTCATGAAGCAAACAGGCAAACTCCTCTTCGTCAAAAACAACTACATGAAGCCTGATCCC
AACGCACCGCCCAAGCGTGGCCGTGGCCGCCCTCCCAAGCCTAAAGTCCCTCTTCCGCCAGGCACCGTCGTCCCTCCACCTCGCCCACGTGGCCGTCCTCCCAAACCCAA
AGATCCATTCGCTCCCATTTCGCAGCCGAAGAAGAAAACCTCGACGGGAAGTGGAAGGCCACGTGGCCGCCCCCCGAAGTCCCCGAAACCTGCGCCAACGTCTGCTCCTC
CTGTCGCCGGCCCCCCCAGAGGCAGAGGGCGGCCACCGAAGGTTAAGCCGGCGGTGGCCCCCATTGGGTGTTAA
Protein sequenceShow/hide protein sequence
MGTEDQLNNPPQPPPPAPSLPHYPEMIMTAIEALNDKNGVSKTAITKQIESTYGDLPPAFTTLLAHHLDVMKQTGKLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPG
TVVPPPRPRGRPPKPKDPFAPISQPKKKTSTGSGRPRGRPPKSPKPAPTSAPPVAGPPRGRGRPPKVKPAVAPIGC