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Carg27960 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg27960
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionGRAM domain-containing protein
Genome locationCarg_Chr19:1236758..1240467
RNA-Seq ExpressionCarg27960
SyntenyCarg27960
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008460396.1 PREDICTED: GEM-like protein 2 isoform X1 [Cucumis melo]8.6e-1251.04Show/hide
Query:  YSSASPSPNGKCLLSSVLHLIF-----LCYYPSPGQPQWILYKGSSVNVFSWVPFHDCDEYVVIAVDQLGQIN-PSNLMDPSQKYIQIITRDSHEF
        Y S S  P    L  S   + F     LCYYPSPGQPQWILYK                  +VIAVDQ+ +IN  SN MDPSQKYIQ+IT DSHEF
Subjt:  YSSASPSPNGKCLLSSVLHLIF-----LCYYPSPGQPQWILYKGSSVNVFSWVPFHDCDEYVVIAVDQLGQIN-PSNLMDPSQKYIQIITRDSHEF
XP_008460398.1 PREDICTED: GEM-like protein 2 isoform X2 [Cucumis melo]8.6e-1251.04Show/hide
Query:  YSSASPSPNGKCLLSSVLHLIF-----LCYYPSPGQPQWILYKGSSVNVFSWVPFHDCDEYVVIAVDQLGQIN-PSNLMDPSQKYIQIITRDSHEF
        Y S S  P    L  S   + F     LCYYPSPGQPQWILYK                  +VIAVDQ+ +IN  SN MDPSQKYIQ+IT DSHEF
Subjt:  YSSASPSPNGKCLLSSVLHLIF-----LCYYPSPGQPQWILYKGSSVNVFSWVPFHDCDEYVVIAVDQLGQIN-PSNLMDPSQKYIQIITRDSHEF
XP_008460399.1 PREDICTED: GEM-like protein 2 isoform X3 [Cucumis melo]8.6e-1251.04Show/hide
Query:  YSSASPSPNGKCLLSSVLHLIF-----LCYYPSPGQPQWILYKGSSVNVFSWVPFHDCDEYVVIAVDQLGQIN-PSNLMDPSQKYIQIITRDSHEF
        Y S S  P    L  S   + F     LCYYPSPGQPQWILYK                  +VIAVDQ+ +IN  SN MDPSQKYIQ+IT DSHEF
Subjt:  YSSASPSPNGKCLLSSVLHLIF-----LCYYPSPGQPQWILYKGSSVNVFSWVPFHDCDEYVVIAVDQLGQIN-PSNLMDPSQKYIQIITRDSHEF
XP_038887653.1 GEM-like protein 2 isoform X1 [Benincasa hispida]1.4e-1454.17Show/hide
Query:  YSSASPSPNGKCLLSSVLHLIF-----LCYYPSPGQPQWILYKGSSVNVFSWVPFHDCDEYVVIAVDQLGQIN-PSNLMDPSQKYIQIITRDSHEF
        Y S S  P    L  S   + F     LCYYPSPG+PQWILYK                  V+IAVDQLG+IN  SNLMDPSQKYIQ+ITRDSHEF
Subjt:  YSSASPSPNGKCLLSSVLHLIF-----LCYYPSPGQPQWILYKGSSVNVFSWVPFHDCDEYVVIAVDQLGQIN-PSNLMDPSQKYIQIITRDSHEF
XP_038887655.1 GEM-like protein 2 isoform X2 [Benincasa hispida]1.4e-1454.17Show/hide
Query:  YSSASPSPNGKCLLSSVLHLIF-----LCYYPSPGQPQWILYKGSSVNVFSWVPFHDCDEYVVIAVDQLGQIN-PSNLMDPSQKYIQIITRDSHEF
        Y S S  P    L  S   + F     LCYYPSPG+PQWILYK                  V+IAVDQLG+IN  SNLMDPSQKYIQ+ITRDSHEF
Subjt:  YSSASPSPNGKCLLSSVLHLIF-----LCYYPSPGQPQWILYKGSSVNVFSWVPFHDCDEYVVIAVDQLGQIN-PSNLMDPSQKYIQIITRDSHEF
TrEMBL top hitse value%identityAlignment
A0A1S3CCD7 GEM-like protein 2 isoform X24.2e-1251.04Show/hide
Query:  YSSASPSPNGKCLLSSVLHLIF-----LCYYPSPGQPQWILYKGSSVNVFSWVPFHDCDEYVVIAVDQLGQIN-PSNLMDPSQKYIQIITRDSHEF
        Y S S  P    L  S   + F     LCYYPSPGQPQWILYK                  +VIAVDQ+ +IN  SN MDPSQKYIQ+IT DSHEF
Subjt:  YSSASPSPNGKCLLSSVLHLIF-----LCYYPSPGQPQWILYKGSSVNVFSWVPFHDCDEYVVIAVDQLGQIN-PSNLMDPSQKYIQIITRDSHEF
A0A1S3CCH4 GEM-like protein 2 isoform X14.2e-1251.04Show/hide
Query:  YSSASPSPNGKCLLSSVLHLIF-----LCYYPSPGQPQWILYKGSSVNVFSWVPFHDCDEYVVIAVDQLGQIN-PSNLMDPSQKYIQIITRDSHEF
        Y S S  P    L  S   + F     LCYYPSPGQPQWILYK                  +VIAVDQ+ +IN  SN MDPSQKYIQ+IT DSHEF
Subjt:  YSSASPSPNGKCLLSSVLHLIF-----LCYYPSPGQPQWILYKGSSVNVFSWVPFHDCDEYVVIAVDQLGQIN-PSNLMDPSQKYIQIITRDSHEF
A0A1S3CCV4 GEM-like protein 2 isoform X34.2e-1251.04Show/hide
Query:  YSSASPSPNGKCLLSSVLHLIF-----LCYYPSPGQPQWILYKGSSVNVFSWVPFHDCDEYVVIAVDQLGQIN-PSNLMDPSQKYIQIITRDSHEF
        Y S S  P    L  S   + F     LCYYPSPGQPQWILYK                  +VIAVDQ+ +IN  SN MDPSQKYIQ+IT DSHEF
Subjt:  YSSASPSPNGKCLLSSVLHLIF-----LCYYPSPGQPQWILYKGSSVNVFSWVPFHDCDEYVVIAVDQLGQIN-PSNLMDPSQKYIQIITRDSHEF
A0A6J1DUB7 GEM-like protein 18.1e-0839.25Show/hide
Query:  PLDAKDNPYVQYSSASPSPNGKCLLSSVLHLIF-----LCYYPSPGQPQWILYKGSSVNVFSWVPFHDCDEYVVIAVDQLGQINPS-NLMDPSQKYIQII
        P D   + Y  Y S S  P    L  S   + F     LCY  SPGQP+W+ YK                  VVI ++Q+  INPS NL++PS+K I I+
Subjt:  PLDAKDNPYVQYSSASPSPNGKCLLSSVLHLIF-----LCYYPSPGQPQWILYKGSSVNVFSWVPFHDCDEYVVIAVDQLGQINPS-NLMDPSQKYIQII

Query:  TRDSHEF
        TRD HEF
Subjt:  TRDSHEF
A0A6J1E018 GEM-like protein 29.3e-1250Show/hide
Query:  YSSASPSPNGKCLLSSVLHLIF-----LCYYPSPGQPQWILYKGSSVNVFSWVPFHDCDEYVVIAVDQLGQIN-PSNLMDPSQKYIQIITRDSHEF
        Y S S  P    L  S   + F     LCYYPSPGQ QWI YK                  VV+AVDQLG IN  SN +DPSQKYIQ+ITRD HEF
Subjt:  YSSASPSPNGKCLLSSVLHLIF-----LCYYPSPGQPQWILYKGSSVNVFSWVPFHDCDEYVVIAVDQLGQIN-PSNLMDPSQKYIQIITRDSHEF
SwissProt top hitse value%identityAlignment
Q8S8F8 GLABRA2 expression modulator5.3e-0430Show/hide
Query:  FMSNPLDAKDNPYVQYSSASPSPNGKCLLSSVLHLIFL----CYYPSPGQPQWILYKGSSVNVFSWVPFHDCDEYVVIAVDQLGQINPS-NLMDPSQKYI
        F ++P +   N +  Y S S  P    L  S   L +       Y +  Q +W  YK                  VVI + QL  +NPS ++++P++KYI
Subjt:  FMSNPLDAKDNPYVQYSSASPSPNGKCLLSSVLHLIFL----CYYPSPGQPQWILYKGSSVNVFSWVPFHDCDEYVVIAVDQLGQINPS-NLMDPSQKYI

Query:  QIITRDSHEF
        Q+I+ D+HEF
Subjt:  QIITRDSHEF
Arabidopsis top hitse value%identityAlignment
AT2G22475.1 GRAM domain family protein3.7e-0530Show/hide
Query:  FMSNPLDAKDNPYVQYSSASPSPNGKCLLSSVLHLIFL----CYYPSPGQPQWILYKGSSVNVFSWVPFHDCDEYVVIAVDQLGQINPS-NLMDPSQKYI
        F ++P +   N +  Y S S  P    L  S   L +       Y +  Q +W  YK                  VVI + QL  +NPS ++++P++KYI
Subjt:  FMSNPLDAKDNPYVQYSSASPSPNGKCLLSSVLHLIFL----CYYPSPGQPQWILYKGSSVNVFSWVPFHDCDEYVVIAVDQLGQINPS-NLMDPSQKYI

Query:  QIITRDSHEF
        Q+I+ D+HEF
Subjt:  QIITRDSHEF
AT4G40100.1 GRAM domain family protein3.2e-0452.78Show/hide
Query:  YVVIAVDQLGQINPS-NLMDPSQKYIQIITRDSHEF
        YVVI + QL  +NPS + ++P++KYIQ+I+ D HEF
Subjt:  YVVIAVDQLGQINPS-NLMDPSQKYIQIITRDSHEF

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACCCAGATGAACTGAGTTTCTGCCTCCTCTCTGCATCCCATGTCTATGTATTCATGAGCAATCCCCTTGACGCCAAAGACAACCCTTATGTTCAGTATTCCTCTGC
TTCCCCATCCCCAAATGGGAAATGTTTGCTTTCTTCTGTTCTGCACTTAATTTTCCTCTGTTACTATCCATCTCCTGGCCAGCCACAGTGGATCCTTTACAAGGGATCTT
CTGTTAATGTCTTTAGTTGGGTTCCTTTTCATGACTGTGATGAATATGTGGTGATAGCGGTTGATCAGTTGGGGCAAATCAACCCTTCAAATCTTATGGACCCCTCACAA
AAATACATCCAAATAATCACGAGGGACTCTCATGAATTC
mRNA sequenceShow/hide mRNA sequence
ATGAACCCAGATGAACTGAGTTTCTGCCTCCTCTCTGCATCCCATGTCTATGTATTCATGAGCAATCCCCTTGACGCCAAAGACAACCCTTATGTTCAGTATTCCTCTGC
TTCCCCATCCCCAAATGGGAAATGTTTGCTTTCTTCTGTTCTGCACTTAATTTTCCTCTGTTACTATCCATCTCCTGGCCAGCCACAGTGGATCCTTTACAAGGGATCTT
CTGTTAATGTCTTTAGTTGGGTTCCTTTTCATGACTGTGATGAATATGTGGTGATAGCGGTTGATCAGTTGGGGCAAATCAACCCTTCAAATCTTATGGACCCCTCACAA
AAATACATCCAAATAATCACGAGGGACTCTCATGAATTC
Protein sequenceShow/hide protein sequence
MNPDELSFCLLSASHVYVFMSNPLDAKDNPYVQYSSASPSPNGKCLLSSVLHLIFLCYYPSPGQPQWILYKGSSVNVFSWVPFHDCDEYVVIAVDQLGQINPSNLMDPSQ
KYIQIITRDSHEF