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Carg27988 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg27988
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationCarg_Chr04:11832739..11833954
RNA-Seq ExpressionCarg27988
SyntenyCarg27988
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7032444.1 hypothetical protein SDJN02_06491, partial [Cucurbita argyrosperma subsp. argyrosperma]1.0e-78100Show/hide
Query:  MDTSSSIQLQQNRSKWIPAYSRFVLRLHGTGPNGSGMVDLNSNDDHRNQLITAMRMGNNNECGSEMKFEVENIRFVVSKVSLIINSLSEEHMEVVNQIQG
        MDTSSSIQLQQNRSKWIPAYSRFVLRLHGTGPNGSGMVDLNSNDDHRNQLITAMRMGNNNECGSEMKFEVENIRFVVSKVSLIINSLSEEHMEVVNQIQG
Subjt:  MDTSSSIQLQQNRSKWIPAYSRFVLRLHGTGPNGSGMVDLNSNDDHRNQLITAMRMGNNNECGSEMKFEVENIRFVVSKVSLIINSLSEEHMEVVNQIQG

Query:  YMKMISRIEQFFEKTDKRNIEVYYDTNCTGTSQIENLPQYVKLMLGQGVAN
        YMKMISRIEQFFEKTDKRNIEVYYDTNCTGTSQIENLPQYVKLMLGQGVAN
Subjt:  YMKMISRIEQFFEKTDKRNIEVYYDTNCTGTSQIENLPQYVKLMLGQGVAN
TrEMBL top hitse value%identityAlignment
A0A438CP06 Retrovirus-related Pol polyprotein from transposon TNT 1-948.7e-0449.15Show/hide
Query:  NIRFVVSKVSLIINSLSEEHMEVVNQIQGYMKMISRIEQFFEKTDKRNIEVYYDTNCTG
        +I FVVS VS  ++S +EEHME V +I  Y+KM  R   FF+KT+ R+ EVY D +  G
Subjt:  NIRFVVSKVSLIINSLSEEHMEVVNQIQGYMKMISRIEQFFEKTDKRNIEVYYDTNCTG
A0A5A7UJZ2 Beta-galactosidase8.7e-0446.67Show/hide
Query:  NIRFVVSKVSLIINSLSEEHMEVVNQIQGYMKMISRIEQFFEKTDKRNIEVYYDTNCTGT
        +I FVVS VS  + +  EEHME V +I GY+KM       F+KTDK+ IE Y D++  G+
Subjt:  NIRFVVSKVSLIINSLSEEHMEVVNQIQGYMKMISRIEQFFEKTDKRNIEVYYDTNCTGT
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATACAAGTTCATCAATACAATTACAACAAAATAGATCTAAATGGATCCCTGCATACTCGAGATTTGTTTTGCGACTACATGGAACAGGTCCGAACGGATCTGGAAT
GGTGGATCTGAACAGCAATGACGATCATAGAAATCAACTGATAACAGCGATGAGAATGGGCAACAACAATGAATGTGGGAGTGAGATGAAGTTTGAAGTTGAGAATATTA
GGTTTGTTGTCAGCAAAGTTAGTCTCATTATAAATAGTCTTAGTGAAGAACATATGGAAGTTGTAAACCAAATTCAAGGCTATATGAAGATGATTTCCAGAATAGAACAG
TTTTTTGAGAAGACTGATAAGAGAAACATTGAGGTCTACTATGATACAAATTGCACAGGAACATCACAAATAGAAAATTTACCTCAGTATGTAAAACTCATGTTGGGGCA
GGGTGTTGCAAATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGATACAAGTTCATCAATACAATTACAACAAAATAGATCTAAATGGATCCCTGCATACTCGAGATTTGTTTTGCGACTACATGGAACAGGTCCGAACGGATCTGGAAT
GGTGGATCTGAACAGCAATGACGATCATAGAAATCAACTGATAACAGCGATGAGAATGGGCAACAACAATGAATGTGGGAGTGAGATGAAGTTTGAAGTTGAGAATATTA
GGTTTGTTGTCAGCAAAGTTAGTCTCATTATAAATAGTCTTAGTGAAGAACATATGGAAGTTGTAAACCAAATTCAAGGCTATATGAAGATGATTTCCAGAATAGAACAG
TTTTTTGAGAAGACTGATAAGAGAAACATTGAGGTCTACTATGATACAAATTGCACAGGAACATCACAAATAGAAAATTTACCTCAGTATGTAAAACTCATGTTGGGGCA
GGGTGTTGCAAATTAA
Protein sequenceShow/hide protein sequence
MDTSSSIQLQQNRSKWIPAYSRFVLRLHGTGPNGSGMVDLNSNDDHRNQLITAMRMGNNNECGSEMKFEVENIRFVVSKVSLIINSLSEEHMEVVNQIQGYMKMISRIEQ
FFEKTDKRNIEVYYDTNCTGTSQIENLPQYVKLMLGQGVAN