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Carg28006 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg28006
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description3-hydroxyisobutyryl-CoA hydrolase 1
Genome locationCarg_Chr14:14224961..14231296
RNA-Seq ExpressionCarg28006
SyntenyCarg28006
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0003860 - 3-hydroxyisobutyryl-CoA hydrolase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR029045 - ClpP/crotonase-like domain superfamily
IPR045004 - Enoyl-CoA hydratase/isomerase domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF2914933.1 hypothetical protein DAI22_10g201400 [Oryza sativa Japonica Group]8.6e-0741.86Show/hide
Query:  QTISQSQVFAMPETALGLFPDVGASYYLSRLPGFFE----IEEDYRE-------ALCRQIKRHAHFRKLLIIPKEPILKDKCIITR
        + +++S VFAMPETALGLFPD+GASY+LSRLPGF+     +EE  ++       A+C  I +++         ++P LK+K  + R
Subjt:  QTISQSQVFAMPETALGLFPDVGASYYLSRLPGFFE----IEEDYRE-------ALCRQIKRHAHFRKLLIIPKEPILKDKCIITR

KAG6582531.1 hypothetical protein SDJN03_22533, partial [Cucurbita argyrosperma subsp. sororia]7.3e-2284.62Show/hide
Query:  RHLTDSSPSSRSLYTLQAPSIAPHIAPFGCKGIAWINSRASTRRPALHKRSTMHPSESSLYLTIW
        RHL DSSPSSR LYTLQAPSIAPHIAPFGCKGIAWINSRASTRRPALHKRSTMHP   +    IW
Subjt:  RHLTDSSPSSRSLYTLQAPSIAPHIAPFGCKGIAWINSRASTRRPALHKRSTMHPSESSLYLTIW

KAG6748853.1 hypothetical protein POTOM_048790 [Populus tomentosa]7.8e-0860.71Show/hide
Query:  QVFAMPETALGLFPDVGASYYLSRLPGFFEIEEDYREALCRQIKRHAH-FRKLLII
        QVFAMPETALGLFPDVGASYYLSRLPGFF +   +  A C   +  +H F +++I+
Subjt:  QVFAMPETALGLFPDVGASYYLSRLPGFFEIEEDYREALCRQIKRHAH-FRKLLII

KAG7018989.1 3-hydroxyisobutyryl-CoA hydrolase 1 [Cucurbita argyrosperma subsp. argyrosperma]6.2e-122100Show/hide
Query:  MIRSQCEARGSVKLLGESGLIFPEIVNPKLFEQTISQSQVFAMPETALGLFPDVGASYYLSRLPGFFEIEEDYREALCRQIKRHAHFRKLLIIPKEPILK
        MIRSQCEARGSVKLLGESGLIFPEIVNPKLFEQTISQSQVFAMPETALGLFPDVGASYYLSRLPGFFEIEEDYREALCRQIKRHAHFRKLLIIPKEPILK
Subjt:  MIRSQCEARGSVKLLGESGLIFPEIVNPKLFEQTISQSQVFAMPETALGLFPDVGASYYLSRLPGFFEIEEDYREALCRQIKRHAHFRKLLIIPKEPILK

Query:  DKCIITRQKYHFESFCSAYFRHLTDSSPSSRSLYTLQAPSIAPHIAPFGCKGIAWINSRASTRRPALHKRSTMHPSESSLYLTIWPCRTFPTLNSNERAQ
        DKCIITRQKYHFESFCSAYFRHLTDSSPSSRSLYTLQAPSIAPHIAPFGCKGIAWINSRASTRRPALHKRSTMHPSESSLYLTIWPCRTFPTLNSNERAQ
Subjt:  DKCIITRQKYHFESFCSAYFRHLTDSSPSSRSLYTLQAPSIAPHIAPFGCKGIAWINSRASTRRPALHKRSTMHPSESSLYLTIWPCRTFPTLNSNERAQ

Query:  PFSREGNVNLSGTILDH
        PFSREGNVNLSGTILDH
Subjt:  PFSREGNVNLSGTILDH

RXH93225.1 hypothetical protein DVH24_013801 [Malus domestica]2.3e-0765.31Show/hide
Query:  SQSQVFAMPETALGLFPDVGASYYLSRLPGFFEIEEDYREALCRQIKRH
        +++ VFAMPETALGLFPDVGASYYLSRLPGFF    D  E L   +  H
Subjt:  SQSQVFAMPETALGLFPDVGASYYLSRLPGFFEIEEDYREALCRQIKRH

TrEMBL top hitse value%identityAlignment
A0A0E0R2S7 Uncharacterized protein4.2e-0741.86Show/hide
Query:  QTISQSQVFAMPETALGLFPDVGASYYLSRLPGFFE----IEEDYRE-------ALCRQIKRHAHFRKLLIIPKEPILKDKCIITR
        + +++S VFAMPETALGLFPD+GASY+LSRLPGF+     +EE  ++       A+C  I +++         ++P LK+K  + R
Subjt:  QTISQSQVFAMPETALGLFPDVGASYYLSRLPGFFE----IEEDYRE-------ALCRQIKRHAHFRKLLIIPKEPILKDKCIITR

A0A438HIQ7 CCHC-type domain-containing protein9.3e-0785.29Show/hide
Query:  TISQSQVFAMPETALGLFPDVGASYYLSRLPGFF
        T+  SQVFAMPETALGLFPDVGASY+LSR PGFF
Subjt:  TISQSQVFAMPETALGLFPDVGASYYLSRLPGFF

A0A498JED9 Uncharacterized protein1.1e-0765.31Show/hide
Query:  SQSQVFAMPETALGLFPDVGASYYLSRLPGFFEIEEDYREALCRQIKRH
        +++ VFAMPETALGLFPDVGASYYLSRLPGFF    D  E L   +  H
Subjt:  SQSQVFAMPETALGLFPDVGASYYLSRLPGFFEIEEDYREALCRQIKRH

B9G752 Uncharacterized protein4.2e-0741.86Show/hide
Query:  QTISQSQVFAMPETALGLFPDVGASYYLSRLPGFFE----IEEDYRE-------ALCRQIKRHAHFRKLLIIPKEPILKDKCIITR
        + +++S VFAMPETALGLFPD+GASY+LSRLPGF+     +EE  ++       A+C  I +++         ++P LK+K  + R
Subjt:  QTISQSQVFAMPETALGLFPDVGASYYLSRLPGFFE----IEEDYRE-------ALCRQIKRHAHFRKLLIIPKEPILKDKCIITR

Q9AYM1 Putative enoyl-CoA-hydratase7.1e-0775Show/hide
Query:  QTISQSQVFAMPETALGLFPDVGASYYLSRLPGFFE
        + +++S VFAMPETALGLFPD+GASY+LSRLPGF+E
Subjt:  QTISQSQVFAMPETALGLFPDVGASYYLSRLPGFFE

SwissProt top hitse value%identityAlignment
Q1PEY5 Probable 3-hydroxyisobutyryl-CoA hydrolase 21.6e-0884.38Show/hide
Query:  SQSQVFAMPETALGLFPDVGASYYLSRLPGFF
        +++ VFAMPETALGLFPDVGASY+LSRLPGFF
Subjt:  SQSQVFAMPETALGLFPDVGASYYLSRLPGFF

Q28FR6 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial2.2e-0570Show/hide
Query:  SQSQVFAMPETALGLFPDVGASYYLSRLPG
        S++ +FAMPETA+GLFPDVG  Y+L RLPG
Subjt:  SQSQVFAMPETALGLFPDVGASYYLSRLPG

Q2HJ73 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial1.9e-0466.67Show/hide
Query:  SQSQVFAMPETALGLFPDVGASYYLSRLPG
        ++  VFAMPETA+GLFPDVG  Y+L RL G
Subjt:  SQSQVFAMPETALGLFPDVGASYYLSRLPG

Q6NMB0 Probable 3-hydroxyisobutyryl-CoA hydrolase 33.6e-0881.25Show/hide
Query:  SQSQVFAMPETALGLFPDVGASYYLSRLPGFF
        +++ VFAMPET+LGLFPDVGASY+LSRLPGFF
Subjt:  SQSQVFAMPETALGLFPDVGASYYLSRLPGFF

Q9LKJ1 3-hydroxyisobutyryl-CoA hydrolase 11.6e-0884.38Show/hide
Query:  SQSQVFAMPETALGLFPDVGASYYLSRLPGFF
        +++ VFAMPETALGLFPDVGASY+LSRLPGFF
Subjt:  SQSQVFAMPETALGLFPDVGASYYLSRLPGFF

Arabidopsis top hitse value%identityAlignment
AT2G30650.1 ATP-dependent caseinolytic (Clp) protease/crotonase family protein1.2e-0984.38Show/hide
Query:  SQSQVFAMPETALGLFPDVGASYYLSRLPGFF
        +++ VFAMPETALGLFPDVGASY+LSRLPGFF
Subjt:  SQSQVFAMPETALGLFPDVGASYYLSRLPGFF

AT2G30660.1 ATP-dependent caseinolytic (Clp) protease/crotonase family protein2.6e-0981.25Show/hide
Query:  SQSQVFAMPETALGLFPDVGASYYLSRLPGFF
        +++ VFAMPET+LGLFPDVGASY+LSRLPGFF
Subjt:  SQSQVFAMPETALGLFPDVGASYYLSRLPGFF

AT5G65940.1 beta-hydroxyisobutyryl-CoA hydrolase 11.2e-0984.38Show/hide
Query:  SQSQVFAMPETALGLFPDVGASYYLSRLPGFF
        +++ VFAMPETALGLFPDVGASY+LSRLPGFF
Subjt:  SQSQVFAMPETALGLFPDVGASYYLSRLPGFF

AT5G65940.2 beta-hydroxyisobutyryl-CoA hydrolase 11.2e-0984.38Show/hide
Query:  SQSQVFAMPETALGLFPDVGASYYLSRLPGFF
        +++ VFAMPETALGLFPDVGASY+LSRLPGFF
Subjt:  SQSQVFAMPETALGLFPDVGASYYLSRLPGFF

AT5G65940.3 beta-hydroxyisobutyryl-CoA hydrolase 11.2e-0984.38Show/hide
Query:  SQSQVFAMPETALGLFPDVGASYYLSRLPGFF
        +++ VFAMPETALGLFPDVGASY+LSRLPGFF
Subjt:  SQSQVFAMPETALGLFPDVGASYYLSRLPGFF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATACGATCCCAGTGTGAAGCTCGGGGTTCTGTCAAGTTACTTGGAGAAAGCGGCCTTATTTTTCCAGAAATAGTCAATCCTAAATTATTTGAGCAAACTATCAGTCA
ATCCCAGGTGTTTGCAATGCCTGAAACTGCTTTAGGGCTCTTCCCAGATGTTGGTGCTTCTTATTACTTGTCGAGACTCCCCGGATTTTTTGAAATTGAAGAGGACTATA
GAGAAGCACTTTGCAGGCAGATCAAGCGCCATGCACATTTCAGAAAATTATTGATAATCCCCAAAGAACCAATCCTTAAAGACAAATGCATTATCACTAGACAGAAATAC
CATTTTGAAAGCTTCTGCAGTGCATATTTTAGGCATCTCACAGATTCCTCGCCGAGCTCAAGATCGTTGTATACTCTGCAAGCACCGAGCATAGCGCCCCATATTGCACC
ATTTGGCTGTAAAGGCATTGCTTGGATAAATTCCCGAGCTTCGACCAGACGTCCCGCTCTGCATAAAAGATCTACCATGCACCCGTCTGAATCAAGCCTATACTTGACGA
TCTGGCCATGTAGAACCTTCCCAACTTTGAACTCCAATGAAAGGGCGCAACCCTTTAGCAGAGAAGGAAATGTGAATCTATCAGGAACAATCCTTGACCATTGA
mRNA sequenceShow/hide mRNA sequence
GTTTCCGCGGCAGTGAACTCTTTTTTCCTATGATACGATCCCAGTGTGAAGCTCGGGGTTCTGTCAAGTTACTTGGAGAAAGCGGCCTTATTTTTCCAGAAATAGTCAAT
CCTAAATTATTTGAGCAAACTATCAGTCAATCCCAGGTGTTTGCAATGCCTGAAACTGCTTTAGGGCTCTTCCCAGATGTTGGTGCTTCTTATTACTTGTCGAGACTCCC
CGGATTTTTTGAAATTGAAGAGGACTATAGAGAAGCACTTTGCAGGCAGATCAAGCGCCATGCACATTTCAGAAAATTATTGATAATCCCCAAAGAACCAATCCTTAAAG
ACAAATGCATTATCACTAGACAGAAATACCATTTTGAAAGCTTCTGCAGTGCATATTTTAGGCATCTCACAGATTCCTCGCCGAGCTCAAGATCGTTGTATACTCTGCAA
GCACCGAGCATAGCGCCCCATATTGCACCATTTGGCTGTAAAGGCATTGCTTGGATAAATTCCCGAGCTTCGACCAGACGTCCCGCTCTGCATAAAAGATCTACCATGCA
CCCGTCTGAATCAAGCCTATACTTGACGATCTGGCCATGTAGAACCTTCCCAACTTTGAACTCCAATGAAAGGGCGCAACCCTTTAGCAGAGAAGGAAATGTGAATCTAT
CAGGAACAATCCTTGACCATTGAAGCATCTCAATGTAACTTCGGAGCGCCCTTCTCGGCATGTCGGAATTCACAAAGCCTCTCAACATGGTATTCCAAGTAAGTATATCC
AACTCTCGAGTGTGAGTAAAAACCGAATAAGCATAGGCGACTCCGAGCGAGCCCATCGAGAGGACATGGGCAATGAGCTTGTTGAGTGATGGGGTATGGTGGATGAAGCC
TGTAACGACCATTTGTGCATGAAGTTGCTGAAATTCTTTGAGCTCTGTCCATTTTTTGCTGTTCTCTAAGAGGGGAAATGGTTTTTGGTTGAATTTGAGACTGGGTTTTG
GAGTGGTGGACAGGTTTGAAGGGATTTTGATGACAAATAATTTTTGGGTCAAAATCATTGGGCTCTGTTTTGGCTTTGAATTTTGTTTGTTTTGGGGTTTTAACAATCTG
TTGGCTAAGATAAGGTTGCCATTTGGACCATTCATTTTGGGAAGAGATAAGAGGAGAGCATGAATTGACTAA
Protein sequenceShow/hide protein sequence
MIRSQCEARGSVKLLGESGLIFPEIVNPKLFEQTISQSQVFAMPETALGLFPDVGASYYLSRLPGFFEIEEDYREALCRQIKRHAHFRKLLIIPKEPILKDKCIITRQKY
HFESFCSAYFRHLTDSSPSSRSLYTLQAPSIAPHIAPFGCKGIAWINSRASTRRPALHKRSTMHPSESSLYLTIWPCRTFPTLNSNERAQPFSREGNVNLSGTILDH