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Carg28019 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg28019
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionDEAD-box ATP-dependent RNA helicase 28 isoform X1
Genome locationCarg_Chr09:7066816..7067335
RNA-Seq ExpressionCarg28019
SyntenyCarg28019
Gene Ontology termsGO:0005730 - nucleolus (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003724 - RNA helicase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6592218.1 DEAD-box ATP-dependent RNA helicase 28, partial [Cucurbita argyrosperma subsp. sororia]2.8e-3779.39Show/hide
Query:  MAKSFVFDPPSDEEFDHSDAEEEEEDEEQEEREEEQGGKRRKMNPFL---------------SVAEEHARRSTTSVDFKISKLLEKRSSHVTPTAADDDE
        MAKSFVFDPPSDEEFDHSDAEEEEEDEEQEEREEEQGGK  +  P                 SVAEEHARRSTTSVDFKISKLLEKRSSHVTPTAADDDE
Subjt:  MAKSFVFDPPSDEEFDHSDAEEEEEDEEQEEREEEQGGKRRKMNPFL---------------SVAEEHARRSTTSVDFKISKLLEKRSSHVTPTAADDDE

Query:  SSEEESDRQIIDR-KDDDDGTSNAGEGKSFF
        SSEEESDRQ   R +DDDDGTSNAGEGKSFF
Subjt:  SSEEESDRQIIDR-KDDDDGTSNAGEGKSFF

KAG7022397.1 DEAD-box ATP-dependent RNA helicase 28, partial [Cucurbita argyrosperma subsp. argyrosperma]2.8e-3779.39Show/hide
Query:  MAKSFVFDPPSDEEFDHSDAEEEEEDEEQEEREEEQGGKRRKMNPFL---------------SVAEEHARRSTTSVDFKISKLLEKRSSHVTPTAADDDE
        MAKSFVFDPPSDEEFDHSDAEEEEEDEEQEEREEEQGGK  +  P                 SVAEEHARRSTTSVDFKISKLLEKRSSHVTPTAADDDE
Subjt:  MAKSFVFDPPSDEEFDHSDAEEEEEDEEQEEREEEQGGKRRKMNPFL---------------SVAEEHARRSTTSVDFKISKLLEKRSSHVTPTAADDDE

Query:  SSEEESDRQIIDR-KDDDDGTSNAGEGKSFF
        SSEEESDRQ   R +DDDDGTSNAGEGKSFF
Subjt:  SSEEESDRQIIDR-KDDDDGTSNAGEGKSFF

KAG7025079.1 hypothetical protein SDJN02_13902, partial [Cucurbita argyrosperma subsp. argyrosperma]2.4e-60100Show/hide
Query:  MAKSFVFDPPSDEEFDHSDAEEEEEDEEQEEREEEQGGKRRKMNPFLSVAEEHARRSTTSVDFKISKLLEKRSSHVTPTAADDDESSEEESDRQIIDRKD
        MAKSFVFDPPSDEEFDHSDAEEEEEDEEQEEREEEQGGKRRKMNPFLSVAEEHARRSTTSVDFKISKLLEKRSSHVTPTAADDDESSEEESDRQIIDRKD
Subjt:  MAKSFVFDPPSDEEFDHSDAEEEEEDEEQEEREEEQGGKRRKMNPFLSVAEEHARRSTTSVDFKISKLLEKRSSHVTPTAADDDESSEEESDRQIIDRKD

Query:  DDDGTSNAGEGKSFFCAHPMGLPFMLIVHGA
        DDDGTSNAGEGKSFFCAHPMGLPFMLIVHGA
Subjt:  DDDGTSNAGEGKSFFCAHPMGLPFMLIVHGA

XP_022976907.1 DEAD-box ATP-dependent RNA helicase 28 isoform X2 [Cucurbita maxima]3.8e-3477.1Show/hide
Query:  MAKSFVFDPPSDEEFDHSDAEEEEEDEEQEEREEEQGGKRRKMNPFL---------------SVAEEHARRSTTSVDFKISKLLEKRSSHVTPTAADDDE
        MAKSFVFDPPSDEEFDHSDA EEEEDEEQEEREEEQGGK  +  P                 SVAEEHARRSTTSVDFKISKLLEKRSS+VTPTAADDDE
Subjt:  MAKSFVFDPPSDEEFDHSDAEEEEEDEEQEEREEEQGGKRRKMNPFL---------------SVAEEHARRSTTSVDFKISKLLEKRSSHVTPTAADDDE

Query:  SSEEESDRQIIDR-KDDDDGTSNAGEGKSFF
        SSEEESDRQ   R +DDDDG SNAGEGKSFF
Subjt:  SSEEESDRQIIDR-KDDDDGTSNAGEGKSFF

XP_022976908.1 DEAD-box ATP-dependent RNA helicase 28 isoform X3 [Cucurbita maxima]3.8e-3477.1Show/hide
Query:  MAKSFVFDPPSDEEFDHSDAEEEEEDEEQEEREEEQGGKRRKMNPFL---------------SVAEEHARRSTTSVDFKISKLLEKRSSHVTPTAADDDE
        MAKSFVFDPPSDEEFDHSDA EEEEDEEQEEREEEQGGK  +  P                 SVAEEHARRSTTSVDFKISKLLEKRSS+VTPTAADDDE
Subjt:  MAKSFVFDPPSDEEFDHSDAEEEEEDEEQEEREEEQGGKRRKMNPFL---------------SVAEEHARRSTTSVDFKISKLLEKRSSHVTPTAADDDE

Query:  SSEEESDRQIIDR-KDDDDGTSNAGEGKSFF
        SSEEESDRQ   R +DDDDG SNAGEGKSFF
Subjt:  SSEEESDRQIIDR-KDDDDGTSNAGEGKSFF

TrEMBL top hitse value%identityAlignment
A0A6J1F9Y6 DEAD-box ATP-dependent RNA helicase 28 isoform X37.0e-3478.63Show/hide
Query:  MAKSFVFDPPSDEEFDHSDAEEEEEDEEQEEREEEQGGK---------RRKMNPF------LSVAEEHARRSTTSVDFKISKLLEKRSSHVTPTAADDDE
        MAKSFVFDPPSDEEFDHSDA EEEEDEEQEEREEEQGGK         RR  +P+       SVAEEHARRSTTSVDFKISKLLEKRSS+VTPTAADDDE
Subjt:  MAKSFVFDPPSDEEFDHSDAEEEEEDEEQEEREEEQGGK---------RRKMNPF------LSVAEEHARRSTTSVDFKISKLLEKRSSHVTPTAADDDE

Query:  SSEEESDRQIIDR-KDDDDGTSNAGEGKSFF
        SSEEESDRQ   R +DDDDGTSNA EGKSFF
Subjt:  SSEEESDRQIIDR-KDDDDGTSNAGEGKSFF

A0A6J1FFD3 DEAD-box ATP-dependent RNA helicase 28 isoform X17.0e-3478.63Show/hide
Query:  MAKSFVFDPPSDEEFDHSDAEEEEEDEEQEEREEEQGGK---------RRKMNPF------LSVAEEHARRSTTSVDFKISKLLEKRSSHVTPTAADDDE
        MAKSFVFDPPSDEEFDHSDA EEEEDEEQEEREEEQGGK         RR  +P+       SVAEEHARRSTTSVDFKISKLLEKRSS+VTPTAADDDE
Subjt:  MAKSFVFDPPSDEEFDHSDAEEEEEDEEQEEREEEQGGK---------RRKMNPF------LSVAEEHARRSTTSVDFKISKLLEKRSSHVTPTAADDDE

Query:  SSEEESDRQIIDR-KDDDDGTSNAGEGKSFF
        SSEEESDRQ   R +DDDDGTSNA EGKSFF
Subjt:  SSEEESDRQIIDR-KDDDDGTSNAGEGKSFF

A0A6J1IH00 DEAD-box ATP-dependent RNA helicase 28 isoform X21.9e-3477.1Show/hide
Query:  MAKSFVFDPPSDEEFDHSDAEEEEEDEEQEEREEEQGGKRRKMNPFL---------------SVAEEHARRSTTSVDFKISKLLEKRSSHVTPTAADDDE
        MAKSFVFDPPSDEEFDHSDA EEEEDEEQEEREEEQGGK  +  P                 SVAEEHARRSTTSVDFKISKLLEKRSS+VTPTAADDDE
Subjt:  MAKSFVFDPPSDEEFDHSDAEEEEEDEEQEEREEEQGGKRRKMNPFL---------------SVAEEHARRSTTSVDFKISKLLEKRSSHVTPTAADDDE

Query:  SSEEESDRQIIDR-KDDDDGTSNAGEGKSFF
        SSEEESDRQ   R +DDDDG SNAGEGKSFF
Subjt:  SSEEESDRQIIDR-KDDDDGTSNAGEGKSFF

A0A6J1II66 DEAD-box ATP-dependent RNA helicase 28 isoform X11.9e-3477.1Show/hide
Query:  MAKSFVFDPPSDEEFDHSDAEEEEEDEEQEEREEEQGGKRRKMNPFL---------------SVAEEHARRSTTSVDFKISKLLEKRSSHVTPTAADDDE
        MAKSFVFDPPSDEEFDHSDA EEEEDEEQEEREEEQGGK  +  P                 SVAEEHARRSTTSVDFKISKLLEKRSS+VTPTAADDDE
Subjt:  MAKSFVFDPPSDEEFDHSDAEEEEEDEEQEEREEEQGGKRRKMNPFL---------------SVAEEHARRSTTSVDFKISKLLEKRSSHVTPTAADDDE

Query:  SSEEESDRQIIDR-KDDDDGTSNAGEGKSFF
        SSEEESDRQ   R +DDDDG SNAGEGKSFF
Subjt:  SSEEESDRQIIDR-KDDDDGTSNAGEGKSFF

A0A6J1INI2 DEAD-box ATP-dependent RNA helicase 28 isoform X31.9e-3477.1Show/hide
Query:  MAKSFVFDPPSDEEFDHSDAEEEEEDEEQEEREEEQGGKRRKMNPFL---------------SVAEEHARRSTTSVDFKISKLLEKRSSHVTPTAADDDE
        MAKSFVFDPPSDEEFDHSDA EEEEDEEQEEREEEQGGK  +  P                 SVAEEHARRSTTSVDFKISKLLEKRSS+VTPTAADDDE
Subjt:  MAKSFVFDPPSDEEFDHSDAEEEEEDEEQEEREEEQGGKRRKMNPFL---------------SVAEEHARRSTTSVDFKISKLLEKRSSHVTPTAADDDE

Query:  SSEEESDRQIIDR-KDDDDGTSNAGEGKSFF
        SSEEESDRQ   R +DDDDG SNAGEGKSFF
Subjt:  SSEEESDRQIIDR-KDDDDGTSNAGEGKSFF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTAAGAGTTTTGTGTTCGATCCCCCCAGTGACGAGGAATTCGACCACTCCGATGCTGAAGAAGAAGAAGAAGATGAAGAACAAGAAGAACGAGAAGAGGAACAAGG
AGGAAAGAGGAGGAAGATGAACCCCTTTCTCTCGGTGGCTGAAGAACATGCCCGTAGAAGCACTACTTCTGTTGATTTCAAAATTTCCAAACTGCTTGAGAAGCGCTCCT
CACACGTCACTCCTACCGCGGCTGATGATGATGAGAGTTCGGAAGAGGAATCTGACAGACAAATTATAGACCGGAAAGACGACGATGATGGAACTAGTAATGCTGGTGAG
GGTAAGTCGTTTTTTTGCGCCCATCCGATGGGGCTTCCTTTCATGCTAATCGTTCATGGAGCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTAAGAGTTTTGTGTTCGATCCCCCCAGTGACGAGGAATTCGACCACTCCGATGCTGAAGAAGAAGAAGAAGATGAAGAACAAGAAGAACGAGAAGAGGAACAAGG
AGGAAAGAGGAGGAAGATGAACCCCTTTCTCTCGGTGGCTGAAGAACATGCCCGTAGAAGCACTACTTCTGTTGATTTCAAAATTTCCAAACTGCTTGAGAAGCGCTCCT
CACACGTCACTCCTACCGCGGCTGATGATGATGAGAGTTCGGAAGAGGAATCTGACAGACAAATTATAGACCGGAAAGACGACGATGATGGAACTAGTAATGCTGGTGAG
GGTAAGTCGTTTTTTTGCGCCCATCCGATGGGGCTTCCTTTCATGCTAATCGTTCATGGAGCTTAA
Protein sequenceShow/hide protein sequence
MAKSFVFDPPSDEEFDHSDAEEEEEDEEQEEREEEQGGKRRKMNPFLSVAEEHARRSTTSVDFKISKLLEKRSSHVTPTAADDDESSEEESDRQIIDRKDDDDGTSNAGE
GKSFFCAHPMGLPFMLIVHGA