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Carg28045 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg28045
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description40S ribosomal protein S25
Genome locationCarg_Chr03:1094368..1097586
RNA-Seq ExpressionCarg28045
SyntenyCarg28045
Gene Ontology termsGO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR004977 - Ribosomal protein S25


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7033553.1 40S ribosomal protein S25 [Cucurbita argyrosperma subsp. argyrosperma]9.8e-36100Show/hide
Query:  MKWSKGKQKEKVNNMVLFDQGSYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMARGSIRLVSAHASQLIYTRATNT
        MKWSKGKQKEKVNNMVLFDQGSYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMARGSIRLVSAHASQLIYTRATNT
Subjt:  MKWSKGKQKEKVNNMVLFDQGSYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMARGSIRLVSAHASQLIYTRATNT

KAG9440264.1 hypothetical protein H6P81_020429 [Aristolochia fimbriata]9.2e-3496.34Show/hide
Query:  KWSKGKQKEKVNNMVLFDQGSYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMARGSIRLVSAHASQLIYTRATNT
        KWSKGKQKEKVNNMVLFDQG+YDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLM+RGSIRLVSAHASQ IYTRATNT
Subjt:  KWSKGKQKEKVNNMVLFDQGSYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMARGSIRLVSAHASQLIYTRATNT

KAG9444381.1 hypothetical protein H6P81_015721 [Aristolochia fimbriata]2.1e-3395.12Show/hide
Query:  KWSKGKQKEKVNNMVLFDQGSYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMARGSIRLVSAHASQLIYTRATNT
        KWSKGKQKEKVNNMVLFDQG+YDKLLSEVPKYKLITPSILSDRLRINGSLARRAI+DLMARGSIRLVS+HASQ IYTRATNT
Subjt:  KWSKGKQKEKVNNMVLFDQGSYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMARGSIRLVSAHASQLIYTRATNT

XP_008391134.1 40S ribosomal protein S25-like [Malus domestica]1.2e-3395.12Show/hide
Query:  KWSKGKQKEKVNNMVLFDQGSYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMARGSIRLVSAHASQLIYTRATNT
        KWSKGKQKEKVNNMVLFDQG+YDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMARGSIRL++AHASQ IYTRATNT
Subjt:  KWSKGKQKEKVNNMVLFDQGSYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMARGSIRLVSAHASQLIYTRATNT

XP_022928621.1 40S ribosomal protein S25-like [Cucurbita moschata]3.7e-35100Show/hide
Query:  KWSKGKQKEKVNNMVLFDQGSYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMARGSIRLVSAHASQLIYTRATNT
        KWSKGKQKEKVNNMVLFDQGSYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMARGSIRLVSAHASQLIYTRATNT
Subjt:  KWSKGKQKEKVNNMVLFDQGSYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMARGSIRLVSAHASQLIYTRATNT

TrEMBL top hitse value%identityAlignment
A0A498IJ67 40S ribosomal protein S255.8e-3495.12Show/hide
Query:  KWSKGKQKEKVNNMVLFDQGSYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMARGSIRLVSAHASQLIYTRATNT
        KWSKGKQKEKVNNMVLFDQG+YDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMARGSIRL++AHASQ IYTRATNT
Subjt:  KWSKGKQKEKVNNMVLFDQGSYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMARGSIRLVSAHASQLIYTRATNT

A0A5B7BSZ6 40S ribosomal protein S253.4e-3496.34Show/hide
Query:  KWSKGKQKEKVNNMVLFDQGSYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMARGSIRLVSAHASQLIYTRATNT
        KWSKGKQKEKVNNMVLFDQG+YDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMARGSIR+VSAHASQ IYTRATNT
Subjt:  KWSKGKQKEKVNNMVLFDQGSYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMARGSIRLVSAHASQLIYTRATNT

A0A5N5H9J7 40S ribosomal protein S255.8e-3495.12Show/hide
Query:  KWSKGKQKEKVNNMVLFDQGSYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMARGSIRLVSAHASQLIYTRATNT
        KWSKGKQKEKVNNMVLFDQG+YDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMARGSIRL++AHASQ IYTRATNT
Subjt:  KWSKGKQKEKVNNMVLFDQGSYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMARGSIRLVSAHASQLIYTRATNT

A0A6J1EKT2 40S ribosomal protein S251.8e-35100Show/hide
Query:  KWSKGKQKEKVNNMVLFDQGSYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMARGSIRLVSAHASQLIYTRATNT
        KWSKGKQKEKVNNMVLFDQGSYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMARGSIRLVSAHASQLIYTRATNT
Subjt:  KWSKGKQKEKVNNMVLFDQGSYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMARGSIRLVSAHASQLIYTRATNT

A0A6J1HY46 40S ribosomal protein S251.8e-35100Show/hide
Query:  KWSKGKQKEKVNNMVLFDQGSYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMARGSIRLVSAHASQLIYTRATNT
        KWSKGKQKEKVNNMVLFDQGSYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMARGSIRLVSAHASQLIYTRATNT
Subjt:  KWSKGKQKEKVNNMVLFDQGSYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMARGSIRLVSAHASQLIYTRATNT

SwissProt top hitse value%identityAlignment
P46301 40S ribosomal protein S259.6e-3487.8Show/hide
Query:  KWSKGKQKEKVNNMVLFDQGSYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMARGSIRLVSAHASQLIYTRATNT
        KWSKGKQKEKVNNMVLFD+ +YDKLLSE PKYKLITPS+LSDRLRI+GSLAR+AI+DLMARGSIR+VSAHASQ IYTRATNT
Subjt:  KWSKGKQKEKVNNMVLFDQGSYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMARGSIRLVSAHASQLIYTRATNT

Q8GYL5 40S ribosomal protein S25-34.0e-3285.19Show/hide
Query:  KWSKGKQKEKVNNMVLFDQGSYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMARGSIRLVSAHASQLIYTRATN
        KWSKGKQKEKVNNMVLFDQ +YDKLLSE PK+KLITPSILSDRLRINGSLARRAI++LMA+G+IR+VSAH+SQ IYTRAT+
Subjt:  KWSKGKQKEKVNNMVLFDQGSYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMARGSIRLVSAHASQLIYTRATN

Q9SIK2 40S ribosomal protein S25-24.7e-3385.37Show/hide
Query:  KWSKGKQKEKVNNMVLFDQGSYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMARGSIRLVSAHASQLIYTRATNT
        KWSKGKQKEKVNNMVLFDQG+YDKLL+E PK+KLITPSILSDR+RINGSLARRAI++LMA+G IR+VSAH+SQ IYTRATNT
Subjt:  KWSKGKQKEKVNNMVLFDQGSYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMARGSIRLVSAHASQLIYTRATNT

Q9SIW5 40S ribosomal protein S25-16.4e-3081.25Show/hide
Query:  KWSKGKQKEKVNNMVLFDQGSYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMARGSIRLVSAHASQLIYTRAT
        KWSKGKQKEKVNNMVLFDQ +YDKL+SE PK+KLITPSILSDRLRINGSLAR+AI+DLM +G+IR+VS H+SQ I TRAT
Subjt:  KWSKGKQKEKVNNMVLFDQGSYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMARGSIRLVSAHASQLIYTRAT

Q9T029 40S ribosomal protein S25-45.3e-3282.93Show/hide
Query:  KWSKGKQKEKVNNMVLFDQGSYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMARGSIRLVSAHASQLIYTRATNT
        KWSKGKQKEKVNNMVLFDQ +YDKLL+E PK+KLITPSILSDR+RINGSLARRAI++LMA+G IR+V+AH+SQ IYTRATNT
Subjt:  KWSKGKQKEKVNNMVLFDQGSYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMARGSIRLVSAHASQLIYTRATNT

Arabidopsis top hitse value%identityAlignment
AT2G21580.1 Ribosomal protein S25 family protein3.4e-3485.37Show/hide
Query:  KWSKGKQKEKVNNMVLFDQGSYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMARGSIRLVSAHASQLIYTRATNT
        KWSKGKQKEKVNNMVLFDQG+YDKLL+E PK+KLITPSILSDR+RINGSLARRAI++LMA+G IR+VSAH+SQ IYTRATNT
Subjt:  KWSKGKQKEKVNNMVLFDQGSYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMARGSIRLVSAHASQLIYTRATNT

AT2G21580.2 Ribosomal protein S25 family protein3.4e-3485.37Show/hide
Query:  KWSKGKQKEKVNNMVLFDQGSYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMARGSIRLVSAHASQLIYTRATNT
        KWSKGKQKEKVNNMVLFDQG+YDKLL+E PK+KLITPSILSDR+RINGSLARRAI++LMA+G IR+VSAH+SQ IYTRATNT
Subjt:  KWSKGKQKEKVNNMVLFDQGSYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMARGSIRLVSAHASQLIYTRATNT

AT4G34555.1 Ribosomal protein S25 family protein2.9e-3385.19Show/hide
Query:  KWSKGKQKEKVNNMVLFDQGSYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMARGSIRLVSAHASQLIYTRATN
        KWSKGKQKEKVNNMVLFDQ +YDKLLSE PK+KLITPSILSDRLRINGSLARRAI++LMA+G+IR+VSAH+SQ IYTRAT+
Subjt:  KWSKGKQKEKVNNMVLFDQGSYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMARGSIRLVSAHASQLIYTRATN

AT4G39200.1 Ribosomal protein S25 family protein3.7e-3382.93Show/hide
Query:  KWSKGKQKEKVNNMVLFDQGSYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMARGSIRLVSAHASQLIYTRATNT
        KWSKGKQKEKVNNMVLFDQ +YDKLL+E PK+KLITPSILSDR+RINGSLARRAI++LMA+G IR+V+AH+SQ IYTRATNT
Subjt:  KWSKGKQKEKVNNMVLFDQGSYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMARGSIRLVSAHASQLIYTRATNT

AT4G39200.2 Ribosomal protein S25 family protein3.7e-3382.93Show/hide
Query:  KWSKGKQKEKVNNMVLFDQGSYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMARGSIRLVSAHASQLIYTRATNT
        KWSKGKQKEKVNNMVLFDQ +YDKLL+E PK+KLITPSILSDR+RINGSLARRAI++LMA+G IR+V+AH+SQ IYTRATNT
Subjt:  KWSKGKQKEKVNNMVLFDQGSYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMARGSIRLVSAHASQLIYTRATNT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAATGGAGCAAGGGAAAGCAAAAGGAGAAGGTGAACAACATGGTATTGTTTGATCAGGGAAGCTATGACAAGCTTCTTTCAGAAGTTCCAAAGTACAAGCTTATTAC
TCCTTCCATCCTTTCAGACAGATTAAGGATCAATGGATCGTTGGCTCGTCGGGCGATAAAGGATTTAATGGCGAGAGGCTCTATTAGGCTCGTATCTGCTCATGCTAGCC
AGCTAATATACACTAGAGCCACAAACACATGA
mRNA sequenceShow/hide mRNA sequence
AATTAACCCTTTGGAAACCCTAGACTTTTTTAAGTACCTGTATTTTCCTCTGGTTTGAGCTCTCCAGCCAGAGTTCTTCGCCTCTGTAATCAACGTTCTGCGTAGTCTTC
CAACCAGATTCTCAGCGGCTGACCCCTCAACATGAAATGGAGCAAGGGAAAGCAAAAGGAGAAGGTGAACAACATGGTATTGTTTGATCAGGGAAGCTATGACAAGCTTC
TTTCAGAAGTTCCAAAGTACAAGCTTATTACTCCTTCCATCCTTTCAGACAGATTAAGGATCAATGGATCGTTGGCTCGTCGGGCGATAAAGGATTTAATGGCGAGAGGC
TCTATTAGGCTCGTATCTGCTCATGCTAGCCAGCTAATATACACTAGAGCCACAAACACATGATCAAAGCGTTGGCGTTTGAAAGAGGAACATCTTGTTATTTTTGTGAG
CTTCCTTTCAAGAACTATCTATGCTTTTGTATCTTCTGCATTCATGGAACGCATGCTGCTCTGAAAACTTCACGAATTATTTGCACTGCTTAATTTCTTATCTATGGAGT
AACAATTTCTCTGAAACTAGACATCCTATTGTGAAATAGAATGGTTTCATGTTCCTTCATCGATTGGTTATTCCTTCCCGTTCTTTCTCTTTTTTCAATTGAGGTATCGA
TTAGTTTACAAGATTGAATGACTTTGATTTTGTATTAATACAATATCTATCCTTACTCCA
Protein sequenceShow/hide protein sequence
MKWSKGKQKEKVNNMVLFDQGSYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMARGSIRLVSAHASQLIYTRATNT