; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg28059 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg28059
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description50S ribosomal protein L24
Genome locationCarg_Chr02:9936699..9938088
RNA-Seq ExpressionCarg28059
SyntenyCarg28059
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR003256 - Ribosomal protein L24
IPR005824 - KOW
IPR005825 - Ribosomal protein L24/L26, conserved site
IPR008991 - Translation protein SH3-like domain superfamily
IPR014722 - Ribosomal protein L2, domain 2
IPR041988 - Ribosomal protein L26/L24, KOW domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0057435.1 50S ribosomal protein L24 [Cucumis melo var. makuwa]1.7e-6893.57Show/hide
Query:  MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDG
        MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQV+DP TGKPCKVG RYLEDG
Subjt:  MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDG

Query:  SKVRVSRGIGASGSIIPRPEILKIRTTPRPTVGTDLNSIT
        SKVRVSRG+ ASGSIIPRPEILKIRT+PRPTVGTDL   T
Subjt:  SKVRVSRGIGASGSIIPRPEILKIRTTPRPTVGTDLNSIT

KAG7036355.1 rplX, partial [Cucurbita argyrosperma subsp. argyrosperma]3.4e-85100Show/hide
Query:  MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDG
        MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDG
Subjt:  MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDG

Query:  SKVRVSRGIGASGSIIPRPEILKIRTTPRPTVGTDLNSITPFVFIYSLCCYLDFFFFVLC
        SKVRVSRGIGASGSIIPRPEILKIRTTPRPTVGTDLNSITPFVFIYSLCCYLDFFFFVLC
Subjt:  SKVRVSRGIGASGSIIPRPEILKIRTTPRPTVGTDLNSITPFVFIYSLCCYLDFFFFVLC

XP_022146016.1 uncharacterized protein LOC111015327 [Momordica charantia]1.9e-6797.73Show/hide
Query:  MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDG
        MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETG+IKRVIR+QNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVG+RYLEDG
Subjt:  MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDG

Query:  SKVRVSRGIGASGSIIPRPEILKIRTTPRPTV
        SKVRVSRGIGASGSIIPRPEILKIRTTPRPTV
Subjt:  SKVRVSRGIGASGSIIPRPEILKIRTTPRPTV

XP_022931187.1 uncharacterized protein LOC111437445 [Cucurbita moschata]2.2e-68100Show/hide
Query:  MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDG
        MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDG
Subjt:  MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDG

Query:  SKVRVSRGIGASGSIIPRPEILKIRTTPRPTV
        SKVRVSRGIGASGSIIPRPEILKIRTTPRPTV
Subjt:  SKVRVSRGIGASGSIIPRPEILKIRTTPRPTV

XP_038889029.1 50S ribosomal protein L24 [Benincasa hispida]7.1e-6797.73Show/hide
Query:  MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDG
        MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDP TGKPCKVG+RYLEDG
Subjt:  MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDG

Query:  SKVRVSRGIGASGSIIPRPEILKIRTTPRPTV
        SKVRVSRGIGASGSIIPR EILKIRTTPRPTV
Subjt:  SKVRVSRGIGASGSIIPRPEILKIRTTPRPTV

TrEMBL top hitse value%identityAlignment
A0A5A7UV70 50S ribosomal protein L248.2e-6993.57Show/hide
Query:  MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDG
        MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQV+DP TGKPCKVG RYLEDG
Subjt:  MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDG

Query:  SKVRVSRGIGASGSIIPRPEILKIRTTPRPTVGTDLNSIT
        SKVRVSRG+ ASGSIIPRPEILKIRT+PRPTVGTDL   T
Subjt:  SKVRVSRGIGASGSIIPRPEILKIRTTPRPTVGTDLNSIT

A0A6J1CYB5 uncharacterized protein LOC1110153279.1e-6897.73Show/hide
Query:  MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDG
        MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETG+IKRVIR+QNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVG+RYLEDG
Subjt:  MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDG

Query:  SKVRVSRGIGASGSIIPRPEILKIRTTPRPTV
        SKVRVSRGIGASGSIIPRPEILKIRTTPRPTV
Subjt:  SKVRVSRGIGASGSIIPRPEILKIRTTPRPTV

A0A6J1EXQ8 uncharacterized protein LOC1114374451.1e-68100Show/hide
Query:  MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDG
        MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDG
Subjt:  MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDG

Query:  SKVRVSRGIGASGSIIPRPEILKIRTTPRPTV
        SKVRVSRGIGASGSIIPRPEILKIRTTPRPTV
Subjt:  SKVRVSRGIGASGSIIPRPEILKIRTTPRPTV

A0A6J1K0T3 uncharacterized protein LOC1114913631.1e-68100Show/hide
Query:  MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDG
        MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDG
Subjt:  MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDG

Query:  SKVRVSRGIGASGSIIPRPEILKIRTTPRPTV
        SKVRVSRGIGASGSIIPRPEILKIRTTPRPTV
Subjt:  SKVRVSRGIGASGSIIPRPEILKIRTTPRPTV

A0A803NPI4 Uncharacterized protein2.9e-6686.62Show/hide
Query:  MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDG
        MGWKAAEKLIRHW+ILRGDNVM+IRGKDKGETGV+KRV+R+QNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQV+DP TGKPCKVG++YLEDG
Subjt:  MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDG

Query:  SKVRVSRGIGASGSIIPRPEILKIRTTPRPTVGTDLNSITPF
        +KVRVSRG+GASGSIIPRPEILKIRTTPRPTV   + S   F
Subjt:  SKVRVSRGIGASGSIIPRPEILKIRTTPRPTVGTDLNSITPF

SwissProt top hitse value%identityAlignment
A8F2D6 50S ribosomal protein L241.5e-2252.43Show/hide
Query:  KILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDGSKVRVSRGIGASG
        K+ +GD V++I GK KG+ G I +V    ++VIV G NLVKKH K  Q  EGGI T E P+H+SN+  +DP TG P KV  ++LEDGSKVRV++    SG
Subjt:  KILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDGSKVRVSRGIGASG

Query:  SII
         II
Subjt:  SII

C3PP96 50S ribosomal protein L241.5e-2251.46Show/hide
Query:  KILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDGSKVRVSRGIGASG
        K+ +GD V++I GK KG+ G I +V    ++VIV G N+VKKH K  Q  EGGI T E P+H+SN+  +DP TG P KV  ++LEDGSKVRV++    SG
Subjt:  KILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDGSKVRVSRGIGASG

Query:  SII
         II
Subjt:  SII

Q4UMR8 50S ribosomal protein L248.6e-2352.43Show/hide
Query:  KILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDGSKVRVSRGIGASG
        K+ +GD V++I GK KG+ G I +V    ++VIV G NLVKKH K  Q  EGGI T E P+H+SN+  +DP TG P KV  ++LEDGSKVRV++    SG
Subjt:  KILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDGSKVRVSRGIGASG

Query:  SII
         II
Subjt:  SII

Q92GX7 50S ribosomal protein L241.5e-2251.46Show/hide
Query:  KILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDGSKVRVSRGIGASG
        K+ +GD V++I GK KG+ G I +V    ++VIV G N+VKKH K  Q  EGGI T E P+H+SN+  +DP TG P KV  ++LEDGSKVRV++    SG
Subjt:  KILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDGSKVRVSRGIGASG

Query:  SII
         II
Subjt:  SII

Q9ZCR6 50S ribosomal protein L241.1e-2251.46Show/hide
Query:  KILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDGSKVRVSRGIGASG
        K+ +GD V+II GK KG+ G + +V   +N V+V G NLVKKH K  +  EGGI T E+P+H+SN+  +DP TG P KV  ++LEDGSKVRV++    SG
Subjt:  KILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDGSKVRVSRGIGASG

Query:  SII
         II
Subjt:  SII

Arabidopsis top hitse value%identityAlignment
AT5G23535.1 KOW domain-containing protein5.5e-6581.51Show/hide
Query:  MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDG
        MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETG IKRVIR+QNRVIVEGKNL+KKHIK G  HEGGIFTVEAPLH SNVQVVDP TG+PCKVGV+YLEDG
Subjt:  MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDG

Query:  SKVRVSRGIGASGSIIPRPEILKIRTTPRPTVGTDLNSITPFVFIY
        +KVRV+RG G SGSIIPRPEILKIR TPRPT     +  TP  F++
Subjt:  SKVRVSRGIGASGSIIPRPEILKIRTTPRPTVGTDLNSITPFVFIY

AT5G54600.1 Translation protein SH3-like family protein2.4e-1234.58Show/hide
Query:  GDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIK-QGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDGSKVRVSRGIGASGSII
        GD V +I G+DKG+ G + ++    + ++++  NL  KH+K + +G  G I  +EAP+H SNV +         +VG + LEDG KVR     G     I
Subjt:  GDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIK-QGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDGSKVRVSRGIGASGSII

Query:  PRPEILK
         + ++LK
Subjt:  PRPEILK

AT5G54600.2 Translation protein SH3-like family protein1.2e-0632.08Show/hide
Query:  GDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDGSKVRVSRGIGASGSIIP
        GD V +I G+DKG+ G + ++  T N  I                  G I  +EAP+H SNV +         +VG + LEDG KVR     G     I 
Subjt:  GDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDGSKVRVSRGIGASGSIIP

Query:  RPEILK
        + ++LK
Subjt:  RPEILK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTTGGAAGGCTGCTGAAAAGCTTATTAGGCACTGGAAAATTCTTAGAGGAGATAATGTGATGATCATTAGAGGCAAGGATAAAGGAGAAACTGGTGTTATTAAGCG
TGTCATTCGCACTCAAAATCGGGTTATTGTTGAGGGTAAAAACTTGGTGAAGAAACATATTAAACAAGGACAAGGTCATGAAGGTGGAATCTTTACGGTTGAAGCTCCAC
TCCATGTATCCAATGTTCAAGTTGTTGATCCAGCAACAGGGAAGCCTTGTAAGGTTGGTGTTCGATATCTTGAAGATGGTTCTAAAGTGCGAGTTTCAAGAGGAATTGGA
GCCTCGGGATCTATAATCCCTCGTCCAGAAATCTTAAAGATAAGGACTACTCCCAGACCTACAGTTGGTACTGATCTAAACTCTATTACCCCTTTTGTTTTTATCTATTC
ACTTTGCTGTTATTTAGATTTTTTTTTTTTTGTTCTTTGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGTTGGAAGGCTGCTGAAAAGCTTATTAGGCACTGGAAAATTCTTAGAGGAGATAATGTGATGATCATTAGAGGCAAGGATAAAGGAGAAACTGGTGTTATTAAGCG
TGTCATTCGCACTCAAAATCGGGTTATTGTTGAGGGTAAAAACTTGGTGAAGAAACATATTAAACAAGGACAAGGTCATGAAGGTGGAATCTTTACGGTTGAAGCTCCAC
TCCATGTATCCAATGTTCAAGTTGTTGATCCAGCAACAGGGAAGCCTTGTAAGGTTGGTGTTCGATATCTTGAAGATGGTTCTAAAGTGCGAGTTTCAAGAGGAATTGGA
GCCTCGGGATCTATAATCCCTCGTCCAGAAATCTTAAAGATAAGGACTACTCCCAGACCTACAGTTGGTACTGATCTAAACTCTATTACCCCTTTTGTTTTTATCTATTC
ACTTTGCTGTTATTTAGATTTTTTTTTTTTTGTTCTTTGCTAAACTTACATGTTCTGATGTGCTTCCATCGCAATTCTGTGTAGT
Protein sequenceShow/hide protein sequence
MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDGSKVRVSRGIG
ASGSIIPRPEILKIRTTPRPTVGTDLNSITPFVFIYSLCCYLDFFFFVLC