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Carg28061 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg28061
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionCYSTM domain-containing protein
Genome locationCarg_Chr09:3588624..3589319
RNA-Seq ExpressionCarg28061
SyntenyCarg28061
Gene Ontology termsGO:0005886 - plasma membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR028144 - Cysteine-rich transmembrane CYSTM domain
IPR044850 - Cysteine-rich and transmembrane domain-containing protein WIH1/2-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3953656.1 hypothetical protein CMV_020922 [Castanea mollissima]6.3e-2376.06Show/hide
Query:  MSSGQPAAVYPPPSTMPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRGDGFWKGCCAALCCCCVLDACF
        MSS +PA  YPPPST P  Y APPPAGYPT+DG  +SQ  P P ETKSRG+GFWKGCCAALCCCCVLDACF
Subjt:  MSSGQPAAVYPPPSTMPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRGDGFWKGCCAALCCCCVLDACF

KAF3972548.1 hypothetical protein CMV_003960 [Castanea mollissima]2.2e-2377.46Show/hide
Query:  MSSGQPAAVYPPPSTMPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRGDGFWKGCCAALCCCCVLDACF
        MSS +PA  YPPPST P  Y APPPAGYPT+DG  +SQ  P P ETKSRGDGFWKGCCAALCCCCVLDACF
Subjt:  MSSGQPAAVYPPPSTMPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRGDGFWKGCCAALCCCCVLDACF

KAG6591814.1 hypothetical protein SDJN03_14160, partial [Cucurbita argyrosperma subsp. sororia]8.7e-33100Show/hide
Query:  MSSGQPAAVYPPPSTMPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRGDGFWKGCCAALCCCCVLDACF
        MSSGQPAAVYPPPSTMPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRGDGFWKGCCAALCCCCVLDACF
Subjt:  MSSGQPAAVYPPPSTMPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRGDGFWKGCCAALCCCCVLDACF

XP_022137938.1 cysteine-rich and transmembrane domain-containing protein WIH2-like [Momordica charantia]5.3e-3092.96Show/hide
Query:  MSSGQPAAVYPPPSTMPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRGDGFWKGCCAALCCCCVLDACF
        MSS QPAAVYPPPST P SYAAPPPAGYPTRDGGDFSQP PVPAETKSRGDGFWKGCCAA+CCCCVLDACF
Subjt:  MSSGQPAAVYPPPSTMPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRGDGFWKGCCAALCCCCVLDACF

XP_031739667.1 cysteine-rich and transmembrane domain-containing protein WIH1-like [Cucumis sativus]2.5e-2486.3Show/hide
Query:  MSSGQPAAV-YPPP-STMPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRGDGFWKGCCAALCCCCVLDACF
        MSS QPA V YPPP ST+PTSY+APPPAGYPTR+GGDFS   PVPAETKSRGDGFWKGCCAALCCCCVLDACF
Subjt:  MSSGQPAAV-YPPP-STMPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRGDGFWKGCCAALCCCCVLDACF

TrEMBL top hitse value%identityAlignment
A0A0A0L4C6 CYSTM domain-containing protein1.2e-2486.3Show/hide
Query:  MSSGQPAAV-YPPP-STMPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRGDGFWKGCCAALCCCCVLDACF
        MSS QPA V YPPP ST+PTSY+APPPAGYPTR+GGDFS   PVPAETKSRGDGFWKGCCAALCCCCVLDACF
Subjt:  MSSGQPAAV-YPPP-STMPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRGDGFWKGCCAALCCCCVLDACF

A0A6J1CBQ4 cysteine-rich and transmembrane domain-containing protein WIH2-like2.6e-3092.96Show/hide
Query:  MSSGQPAAVYPPPSTMPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRGDGFWKGCCAALCCCCVLDACF
        MSS QPAAVYPPPST P SYAAPPPAGYPTRDGGDFSQP PVPAETKSRGDGFWKGCCAA+CCCCVLDACF
Subjt:  MSSGQPAAVYPPPSTMPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRGDGFWKGCCAALCCCCVLDACF

A0A7N2LG73 CYSTM domain-containing protein2.3e-2376.06Show/hide
Query:  MSSGQPAAVYPPPSTMPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRGDGFWKGCCAALCCCCVLDACF
        MSS +PA  YPPPST P  Y APPPAGYPT+DG  +SQ  P P ETKSRGDGFWKGCCAALCCCCV+DACF
Subjt:  MSSGQPAAVYPPPSTMPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRGDGFWKGCCAALCCCCVLDACF

A0A7N2LJ98 CYSTM domain-containing protein2.0e-2274.65Show/hide
Query:  MSSGQPAAVYPPPSTMPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRGDGFWKGCCAALCCCCVLDACF
        MSS +PA  YPPPST PT Y A PPAGYPT+DG  +SQ  P P ETKSRGDGFWKGCCAALCCCC LD CF
Subjt:  MSSGQPAAVYPPPSTMPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRGDGFWKGCCAALCCCCVLDACF

A0A7N2R3F7 CYSTM domain-containing protein3.0e-2376.06Show/hide
Query:  MSSGQPAAVYPPPSTMPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRGDGFWKGCCAALCCCCVLDACF
        MSS +PA  YPPPST+P  Y APPPAGYPT+DG  + Q  P P ETKSRGDGFWKGCCAALCCCCVLDACF
Subjt:  MSSGQPAAVYPPPSTMPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRGDGFWKGCCAALCCCCVLDACF

SwissProt top hitse value%identityAlignment
Q8S8M0 Cysteine-rich and transmembrane domain-containing protein WIH24.0e-0438.46Show/hide
Query:  GQPAAVYPPPSTMPTSYAAP--PPAGYPTRDGGDFSQPAPVPA--------ETKSRGDGFWKGCCAALCCCCVLDACF
        G P   YPP    P  Y     PP GYP +       P P           + +    GF +GC AALCCCC+LDACF
Subjt:  GQPAAVYPPPSTMPTSYAAP--PPAGYPTRDGGDFSQPAPVPA--------ETKSRGDGFWKGCCAALCCCCVLDACF

Q9FJW3 Cysteine-rich and transmembrane domain-containing protein WIH15.2e-0444.93Show/hide
Query:  GQPAAVYPPPSTMPTSYAAPPPA-GYPTRDGGDFSQPAPVPAETKSRGDGFWKGCCAALCCCCVLDACF
        G P A YPP    P  YA   PA GYP         P    A  + +  G  +GC AALCCCC+LDACF
Subjt:  GQPAAVYPPPSTMPTSYAAPPPA-GYPTRDGGDFSQPAPVPAETKSRGDGFWKGCCAALCCCCVLDACF

Arabidopsis top hitse value%identityAlignment
AT1G05340.1 unknown protein2.2e-1055.22Show/hide
Query:  QPAAVYPPPSTMPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRGDGFWKGCCAALCCCCVLDACF
        Q A   PPP  M T  + PPP GYPT      S  A    ETKS+GDGF+KGC AA+CCCC LD CF
Subjt:  QPAAVYPPPSTMPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRGDGFWKGCCAALCCCCVLDACF

AT2G32190.1 unknown protein4.3e-1455.71Show/hide
Query:  SSGQPAAVYPPPSTMPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRGDGFWKGCCAALCCCCVLDACF
        S  Q +  YP P      Y  PPP GYPT    D S     P ETKS+GDGF KGC AA+CCCCVLDACF
Subjt:  SSGQPAAVYPPPSTMPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRGDGFWKGCCAALCCCCVLDACF

AT2G32200.1 unknown protein3.2e-0950Show/hide
Query:  SSGQPAAVYPPPSTMPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRG---DGFWKGCCAALCCCCVLDAC
        S  Q A  YP P      Y APPP GYPT    D +     P ETKS+G   DGF KGC A +  CCVLDAC
Subjt:  SSGQPAAVYPPPSTMPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRG---DGFWKGCCAALCCCCVLDAC

AT2G32210.1 unknown protein1.6e-1355.71Show/hide
Query:  SSGQPAAVYPPPSTMPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRGDGFWKGCCAALCCCCVLDACF
        S  Q +  YP P      Y APPP GYPT    D S       ETKS+GDGF KGC AA+CCCCVLDACF
Subjt:  SSGQPAAVYPPPSTMPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRGDGFWKGCCAALCCCCVLDACF

AT3G22240.1 unknown protein1.8e-1562.12Show/hide
Query:  AVYPPPSTMPTSYAAPPPAGYPTRDG--GDFSQPAPVPAETKSRGDGFWKGCCAALCCCCVLDACF
        +V  P  T    Y +PPP GYPTRD   GD   P     ETKS+GDGFWKGCCAA+CCCCVLDACF
Subjt:  AVYPPPSTMPTSYAAPPPAGYPTRDG--GDFSQPAPVPAETKSRGDGFWKGCCAALCCCCVLDACF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTTCCGGTCAGCCTGCAGCCGTTTATCCTCCACCCTCCACCATGCCAACCTCTTACGCCGCTCCTCCTCCGGCAGGATATCCGACGAGAGACGGCGGCGACTTCTC
TCAACCCGCCCCCGTTCCGGCTGAAACCAAGTCCAGAGGCGATGGCTTCTGGAAAGGCTGTTGTGCTGCCTTGTGTTGCTGCTGTGTGTTGGATGCATGCTTCTAA
mRNA sequenceShow/hide mRNA sequence
AATAGAATTATTTCTAATTTTCCTCCCTCCGTCAAAACCTCCGATTTTATTATCATTTCATCTCTCTCTCTCTAGAAAACATGAGTTCCGGTCAGCCTGCAGCCGTTTAT
CCTCCACCCTCCACCATGCCAACCTCTTACGCCGCTCCTCCTCCGGCAGGATATCCGACGAGAGACGGCGGCGACTTCTCTCAACCCGCCCCCGTTCCGGCTGAAACCAA
GTCCAGAGGCGATGGCTTCTGGAAAGGCTGTTGTGCTGCCTTGTGTTGCTGCTGTGTGTTGGATGCATGCTTCTAAGCACTAGAAGAAAAATGACGAATTTAGTATTTTT
AATTTTATCTTTAATGAATTTTTGGATTAATTATGTGATCATGATGATGTAATAATAATAAATTGCGTGTTGATTTGTGTGATATTTTATATAATATATAATTTAATTAT
ATTGTTTCTTGTGGAGTT
Protein sequenceShow/hide protein sequence
MSSGQPAAVYPPPSTMPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRGDGFWKGCCAALCCCCVLDACF