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Carg28064 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg28064
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionCholine-phosphate cytidylyltransferase
Genome locationCarg_Chr09:3569542..3571277
RNA-Seq ExpressionCarg28064
SyntenyCarg28064
Gene Ontology termsGO:0006657 - CDP-choline pathway (biological process)
GO:0004105 - choline-phosphate cytidylyltransferase activity (molecular function)
InterPro domainsIPR004821 - Cytidyltransferase-like domain
IPR014729 - Rossmann-like alpha/beta/alpha sandwich fold
IPR045049 - Choline-phosphate cytidylyltransferase Pcy1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7024676.1 Choline-phosphate cytidylyltransferase 2, partial [Cucurbita argyrosperma subsp. argyrosperma]1.2e-76100Show/hide
Query:  MAEVNPGESTTTTTTITTTTTTTTVNGSQNHSNSDQPTDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEAERYES
        MAEVNPGESTTTTTTITTTTTTTTVNGSQNHSNSDQPTDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEAERYES
Subjt:  MAEVNPGESTTTTTTITTTTTTTTVNGSQNHSNSDQPTDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEAERYES

Query:  LRQLQVKKIGKVQGTKRTDGISTSDIIMRIGKDYNQAKELEVNIEIEEITGES
        LRQLQVKKIGKVQGTKRTDGISTSDIIMRIGKDYNQAKELEVNIEIEEITGES
Subjt:  LRQLQVKKIGKVQGTKRTDGISTSDIIMRIGKDYNQAKELEVNIEIEEITGES

TYK28037.1 choline-phosphate cytidylyltransferase 2-like [Cucumis melo var. makuwa]1.3e-4964.84Show/hide
Query:  MAEVNPGESTTTTTTITTTTTTTTVNGSQNHSNSDQPTDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEAERYES
        MAEV PG+S   TT ITT TTTT  NGSQNHSNSDQPTDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNT+LLVGCCNDETTHKFKGKTVMTEAERYES
Subjt:  MAEVNPGESTTTTTTITTTTTTTTVNGSQNHSNSDQPTDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEAERYES

Query:  LRQLQ----------------------------------------------VKKIGKVQGTKRTDGISTSDIIMRIGKDYNQ
        LR  +                                              VKKIGK + TKRT+GISTSDIIMRI KDYNQ
Subjt:  LRQLQ----------------------------------------------VKKIGKVQGTKRTDGISTSDIIMRIGKDYNQ

XP_004145998.1 choline-phosphate cytidylyltransferase 2 isoform X1 [Cucumis sativus]3.4e-5065.22Show/hide
Query:  MAEVNPGEST--TTTTTITTTTTTTTVNGSQNHSNSDQPTDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEAERY
        MAEV PG+ST  TTTTTITTTT TT  NGSQNHSNSD PTDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNT+LLVGCCNDETTHKFKGKTVM EAERY
Subjt:  MAEVNPGEST--TTTTTITTTTTTTTVNGSQNHSNSDQPTDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEAERY

Query:  ESLRQLQ----------------------------------------------VKKIGKVQGTKRTDGISTSDIIMRIGKDYNQ
        ESLR  +                                              VKKIGK + TKRT+GISTSDIIMRI KDYNQ
Subjt:  ESLRQLQ----------------------------------------------VKKIGKVQGTKRTDGISTSDIIMRIGKDYNQ

XP_022936193.1 choline-phosphate cytidylyltransferase 2-like [Cucurbita moschata]1.9e-5670.33Show/hide
Query:  MAEVNPGESTTTTTTITTTTTTTTVNGSQNHSNSDQPTDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEAERYES
        MAEVNPGESTTTTTTITTTTTTTT+NGSQNHSNSDQPTDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEAERYES
Subjt:  MAEVNPGESTTTTTTITTTTTTTTVNGSQNHSNSDQPTDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEAERYES

Query:  LRQLQ----------------------------------------------VKKIGKVQGTKRTDGISTSDIIMRIGKDYNQ
        LR  +                                              VKKIGK + TKRTDGISTSDIIMRI KDYNQ
Subjt:  LRQLQ----------------------------------------------VKKIGKVQGTKRTDGISTSDIIMRIGKDYNQ

XP_022976814.1 choline-phosphate cytidylyltransferase 2-like [Cucurbita maxima]1.4e-5670.88Show/hide
Query:  MAEVNPGESTTTTTTITTTTTTTTVNGSQNHSNSDQPTDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEAERYES
        MAEVNPGESTTTTTTITTTTTTTTVNGSQNHSNSDQPTDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEAERYES
Subjt:  MAEVNPGESTTTTTTITTTTTTTTVNGSQNHSNSDQPTDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEAERYES

Query:  LRQLQ----------------------------------------------VKKIGKVQGTKRTDGISTSDIIMRIGKDYNQ
        LR  +                                              VKKIGK + TKRTDGISTSDIIMRI KDYNQ
Subjt:  LRQLQ----------------------------------------------VKKIGKVQGTKRTDGISTSDIIMRIGKDYNQ

TrEMBL top hitse value%identityAlignment
A0A1S3CM33 choline-phosphate cytidylyltransferase 2-like6.3e-5064.84Show/hide
Query:  MAEVNPGESTTTTTTITTTTTTTTVNGSQNHSNSDQPTDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEAERYES
        MAEV PG+S   TT ITT TTTT  NGSQNHSNSDQPTDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNT+LLVGCCNDETTHKFKGKTVMTEAERYES
Subjt:  MAEVNPGESTTTTTTITTTTTTTTVNGSQNHSNSDQPTDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEAERYES

Query:  LRQLQ----------------------------------------------VKKIGKVQGTKRTDGISTSDIIMRIGKDYNQ
        LR  +                                              VKKIGK + TKRT+GISTSDIIMRI KDYNQ
Subjt:  LRQLQ----------------------------------------------VKKIGKVQGTKRTDGISTSDIIMRIGKDYNQ

A0A5D3DW49 Choline-phosphate cytidylyltransferase 2-like6.3e-5064.84Show/hide
Query:  MAEVNPGESTTTTTTITTTTTTTTVNGSQNHSNSDQPTDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEAERYES
        MAEV PG+S   TT ITT TTTT  NGSQNHSNSDQPTDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNT+LLVGCCNDETTHKFKGKTVMTEAERYES
Subjt:  MAEVNPGESTTTTTTITTTTTTTTVNGSQNHSNSDQPTDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEAERYES

Query:  LRQLQ----------------------------------------------VKKIGKVQGTKRTDGISTSDIIMRIGKDYNQ
        LR  +                                              VKKIGK + TKRT+GISTSDIIMRI KDYNQ
Subjt:  LRQLQ----------------------------------------------VKKIGKVQGTKRTDGISTSDIIMRIGKDYNQ

A0A6J1BZ99 choline-phosphate cytidylyltransferase 2-like7.9e-4558.79Show/hide
Query:  MAEVNPGESTTTTTTITTTTTTTTVNGSQNHSNSDQPTDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEAERYES
        MA+V  G+S             TT+NGS NHSNSDQPTDRP+RVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDE THKFKGKTVMTEAERYES
Subjt:  MAEVNPGESTTTTTTITTTTTTTTVNGSQNHSNSDQPTDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEAERYES

Query:  LRQLQ----------------------------------------------VKKIGKVQGTKRTDGISTSDIIMRIGKDYNQ
        LR  +                                              VKKIGK + TKRT+GISTSDIIMRI KDYNQ
Subjt:  LRQLQ----------------------------------------------VKKIGKVQGTKRTDGISTSDIIMRIGKDYNQ

A0A6J1FCK6 choline-phosphate cytidylyltransferase 2-like9.0e-5770.33Show/hide
Query:  MAEVNPGESTTTTTTITTTTTTTTVNGSQNHSNSDQPTDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEAERYES
        MAEVNPGESTTTTTTITTTTTTTT+NGSQNHSNSDQPTDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEAERYES
Subjt:  MAEVNPGESTTTTTTITTTTTTTTVNGSQNHSNSDQPTDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEAERYES

Query:  LRQLQ----------------------------------------------VKKIGKVQGTKRTDGISTSDIIMRIGKDYNQ
        LR  +                                              VKKIGK + TKRTDGISTSDIIMRI KDYNQ
Subjt:  LRQLQ----------------------------------------------VKKIGKVQGTKRTDGISTSDIIMRIGKDYNQ

A0A6J1IPQ3 choline-phosphate cytidylyltransferase 2-like6.9e-5770.88Show/hide
Query:  MAEVNPGESTTTTTTITTTTTTTTVNGSQNHSNSDQPTDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEAERYES
        MAEVNPGESTTTTTTITTTTTTTTVNGSQNHSNSDQPTDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEAERYES
Subjt:  MAEVNPGESTTTTTTITTTTTTTTVNGSQNHSNSDQPTDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEAERYES

Query:  LRQLQ----------------------------------------------VKKIGKVQGTKRTDGISTSDIIMRIGKDYNQ
        LR  +                                              VKKIGK + TKRTDGISTSDIIMRI KDYNQ
Subjt:  LRQLQ----------------------------------------------VKKIGKVQGTKRTDGISTSDIIMRIGKDYNQ

SwissProt top hitse value%identityAlignment
F4JJE0 Choline-phosphate cytidylyltransferase 22.6e-3755Show/hide
Query:  TVNGSQNHSNSD-QPTDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEAERYESLRQLQ-----------------
        +VNG    S  D   +DRPVRVYADGI+DLFHFGHAR++EQAKKSFPNTYLLVGCCNDE T+KFKGKTVMTE+ERYESLR  +                 
Subjt:  TVNGSQNHSNSD-QPTDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEAERYESLRQLQ-----------------

Query:  -----------------------------VKKIGKVQGTKRTDGISTSDIIMRIGKDYNQ
                                     VK IGK + TKRT+GISTSDIIMRI KDYNQ
Subjt:  -----------------------------VKKIGKVQGTKRTDGISTSDIIMRIGKDYNQ

Q811Q9 Choline-phosphate cytidylyltransferase B5.5e-2747.55Show/hide
Query:  PTDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEAERYESLRQLQ-------------------------------
        P DRPVRVYADGI+DLFH GHAR+L QAK  FPN+YLLVG C+D+ THKFKG TVM EAERYE+LR  +                               
Subjt:  PTDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEAERYESLRQLQ-------------------------------

Query:  -------------VKKIGKVQGTKRTDGISTSDIIMRIGKDYN
                     +K+ G    T+RT+GISTSDII RI +DY+
Subjt:  -------------VKKIGKVQGTKRTDGISTSDIIMRIGKDYN

Q9QZC4 Choline-phosphate cytidylyltransferase B5.5e-2747.55Show/hide
Query:  PTDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEAERYESLRQLQ-------------------------------
        P DRPVRVYADGI+DLFH GHAR+L QAK  FPN+YLLVG C+D+ THKFKG TVM EAERYE+LR  +                               
Subjt:  PTDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEAERYESLRQLQ-------------------------------

Query:  -------------VKKIGKVQGTKRTDGISTSDIIMRIGKDYN
                     +K+ G    T+RT+GISTSDII RI +DY+
Subjt:  -------------VKKIGKVQGTKRTDGISTSDIIMRIGKDYN

Q9Y5K3 Choline-phosphate cytidylyltransferase B5.5e-2747.55Show/hide
Query:  PTDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEAERYESLRQLQ-------------------------------
        P DRPVRVYADGI+DLFH GHAR+L QAK  FPN+YLLVG C+D+ THKFKG TVM EAERYE+LR  +                               
Subjt:  PTDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEAERYESLRQLQ-------------------------------

Query:  -------------VKKIGKVQGTKRTDGISTSDIIMRIGKDYN
                     +K+ G    T+RT+GISTSDII RI +DY+
Subjt:  -------------VKKIGKVQGTKRTDGISTSDIIMRIGKDYN

Q9ZV56 Choline-phosphate cytidylyltransferase 17.2e-3553.05Show/hide
Query:  TTTTTVNGSQNHSNSDQPTDRPVRVYADGIYDLFHFGHARSLEQAKKSFP-NTYLLVGCCNDETTHKFKGKTVMTEAERYESLRQLQ-------------
        +T    +GS     S  PTDRPVRVYADGIYDLFHFGHARSLEQAK +FP NTYLLVGCCNDETTHK+KG+TVMT  ERYESLR  +             
Subjt:  TTTTTVNGSQNHSNSDQPTDRPVRVYADGIYDLFHFGHARSLEQAKKSFP-NTYLLVGCCNDETTHKFKGKTVMTEAERYESLRQLQ-------------

Query:  ---------------------------------VKKIGKVQGTKRTDGISTSDIIMRIGKDYNQ
                                         VKK+G+ + T+RT+GISTSDIIMRI KDYNQ
Subjt:  ---------------------------------VKKIGKVQGTKRTDGISTSDIIMRIGKDYNQ

Arabidopsis top hitse value%identityAlignment
AT2G32260.1 phosphorylcholine cytidylyltransferase5.1e-3653.05Show/hide
Query:  TTTTTVNGSQNHSNSDQPTDRPVRVYADGIYDLFHFGHARSLEQAKKSFP-NTYLLVGCCNDETTHKFKGKTVMTEAERYESLRQLQ-------------
        +T    +GS     S  PTDRPVRVYADGIYDLFHFGHARSLEQAK +FP NTYLLVGCCNDETTHK+KG+TVMT  ERYESLR  +             
Subjt:  TTTTTVNGSQNHSNSDQPTDRPVRVYADGIYDLFHFGHARSLEQAKKSFP-NTYLLVGCCNDETTHKFKGKTVMTEAERYESLRQLQ-------------

Query:  ---------------------------------VKKIGKVQGTKRTDGISTSDIIMRIGKDYNQ
                                         VKK+G+ + T+RT+GISTSDIIMRI KDYNQ
Subjt:  ---------------------------------VKKIGKVQGTKRTDGISTSDIIMRIGKDYNQ

AT2G38670.1 phosphorylethanolamine cytidylyltransferase 11.2e-0525.18Show/hide
Query:  RPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEAERYESLRQLQ----------------------------------
        +PVRVY DG +D+ H+GH  +L QA+       L+VG  +DE     KG  V    ER   ++ ++                                  
Subjt:  RPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEAERYESLRQLQ----------------------------------

Query:  --------------VKKIGKVQGTKRTDGISTSDIIMRI
                       KK G+ +  KRT+G+S++DI+ R+
Subjt:  --------------VKKIGKVQGTKRTDGISTSDIIMRI

AT4G15130.1 phosphorylcholine cytidylyltransferase21.9e-3855Show/hide
Query:  TVNGSQNHSNSD-QPTDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEAERYESLRQLQ-----------------
        +VNG    S  D   +DRPVRVYADGI+DLFHFGHAR++EQAKKSFPNTYLLVGCCNDE T+KFKGKTVMTE+ERYESLR  +                 
Subjt:  TVNGSQNHSNSD-QPTDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEAERYESLRQLQ-----------------

Query:  -----------------------------VKKIGKVQGTKRTDGISTSDIIMRIGKDYNQ
                                     VK IGK + TKRT+GISTSDIIMRI KDYNQ
Subjt:  -----------------------------VKKIGKVQGTKRTDGISTSDIIMRIGKDYNQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGAGGTGAATCCCGGCGAATCCACCACCACCACTACCACTATCACCACCACCACCACCACCACCACTGTCAACGGTTCTCAAAACCATTCGAATTCCGATCAGCC
AACGGACCGTCCAGTTCGTGTCTACGCTGATGGGATCTACGATCTCTTCCATTTTGGTCACGCTCGCTCTCTTGAGCAAGCCAAGAAATCGTTCCCGAATACCTATCTGC
TAGTTGGATGTTGTAATGATGAGACTACCCACAAGTTTAAAGGGAAAACTGTTATGACTGAAGCTGAACGATATGAATCTCTTCGCCAATTGCAAGTTAAAAAGATTGGA
AAGGTTCAAGGAACTAAAAGGACAGATGGAATATCAACTTCAGACATTATCATGAGGATTGGTAAAGATTATAATCAAGCAAAAGAGCTTGAAGTAAATATTGAGATTGA
AGAAATTACAGGAGAAAGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGGAGGTGAATCCCGGCGAATCCACCACCACCACTACCACTATCACCACCACCACCACCACCACCACTGTCAACGGTTCTCAAAACCATTCGAATTCCGATCAGCC
AACGGACCGTCCAGTTCGTGTCTACGCTGATGGGATCTACGATCTCTTCCATTTTGGTCACGCTCGCTCTCTTGAGCAAGCCAAGAAATCGTTCCCGAATACCTATCTGC
TAGTTGGATGTTGTAATGATGAGACTACCCACAAGTTTAAAGGGAAAACTGTTATGACTGAAGCTGAACGATATGAATCTCTTCGCCAATTGCAAGTTAAAAAGATTGGA
AAGGTTCAAGGAACTAAAAGGACAGATGGAATATCAACTTCAGACATTATCATGAGGATTGGTAAAGATTATAATCAAGCAAAAGAGCTTGAAGTAAATATTGAGATTGA
AGAAATTACAGGAGAAAGTTAA
Protein sequenceShow/hide protein sequence
MAEVNPGESTTTTTTITTTTTTTTVNGSQNHSNSDQPTDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEAERYESLRQLQVKKIG
KVQGTKRTDGISTSDIIMRIGKDYNQAKELEVNIEIEEITGES