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Carg28067 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg28067
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionLysM domain-containing protein
Genome locationCarg_Chr01:4827643..4830238
RNA-Seq ExpressionCarg28067
SyntenyCarg28067
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6607505.1 hypothetical protein SDJN03_00847, partial [Cucurbita argyrosperma subsp. sororia]7.1e-11299.51Show/hide
Query:  MEVKVGQRNGVDGSPLLPQPILSSLLTPHRNWANAKASLKNQFRAIALFRDRYQLQEKLQSSLNGLCKYQMHFTLACPRLPPARTTSLVVLVPLIVFCAK
        MEVKVGQRNGVDGSPLLPQPILSSLLTPHRNWANAKASLKNQFRAIALFRDRYQLQEKLQSSLNGLCKYQMH TLACPRLPPARTTSLVVLVPLIVFCAK
Subjt:  MEVKVGQRNGVDGSPLLPQPILSSLLTPHRNWANAKASLKNQFRAIALFRDRYQLQEKLQSSLNGLCKYQMHFTLACPRLPPARTTSLVVLVPLIVFCAK

Query:  CIIGASYARVFGTSRLKPVKEPEGERHNFRSGHWRSALREIRELDGLDSESSIYSTSPSEEQQISVEDLSHAYKKLDQEYDKFLSECGLSKWGYWRGGAQ
        CIIGASYARVFGTSRLKPVKEPEGERHNFRSGHWRSALREIRELDGLDSESSIYSTSPSEEQQISVEDLSHAYKKLDQEYDKFLSECGLSKWGYWRGGAQ
Subjt:  CIIGASYARVFGTSRLKPVKEPEGERHNFRSGHWRSALREIRELDGLDSESSIYSTSPSEEQQISVEDLSHAYKKLDQEYDKFLSECGLSKWGYWRGGAQ

Query:  RPGQE
        RPGQE
Subjt:  RPGQE

KAG7037157.1 hypothetical protein SDJN02_00779 [Cucurbita argyrosperma subsp. argyrosperma]1.4e-112100Show/hide
Query:  MEVKVGQRNGVDGSPLLPQPILSSLLTPHRNWANAKASLKNQFRAIALFRDRYQLQEKLQSSLNGLCKYQMHFTLACPRLPPARTTSLVVLVPLIVFCAK
        MEVKVGQRNGVDGSPLLPQPILSSLLTPHRNWANAKASLKNQFRAIALFRDRYQLQEKLQSSLNGLCKYQMHFTLACPRLPPARTTSLVVLVPLIVFCAK
Subjt:  MEVKVGQRNGVDGSPLLPQPILSSLLTPHRNWANAKASLKNQFRAIALFRDRYQLQEKLQSSLNGLCKYQMHFTLACPRLPPARTTSLVVLVPLIVFCAK

Query:  CIIGASYARVFGTSRLKPVKEPEGERHNFRSGHWRSALREIRELDGLDSESSIYSTSPSEEQQISVEDLSHAYKKLDQEYDKFLSECGLSKWGYWRGGAQ
        CIIGASYARVFGTSRLKPVKEPEGERHNFRSGHWRSALREIRELDGLDSESSIYSTSPSEEQQISVEDLSHAYKKLDQEYDKFLSECGLSKWGYWRGGAQ
Subjt:  CIIGASYARVFGTSRLKPVKEPEGERHNFRSGHWRSALREIRELDGLDSESSIYSTSPSEEQQISVEDLSHAYKKLDQEYDKFLSECGLSKWGYWRGGAQ

Query:  RPGQE
        RPGQE
Subjt:  RPGQE

XP_022949194.1 uncharacterized protein LOC111452617 isoform X1 [Cucurbita moschata]1.4e-10797.07Show/hide
Query:  MEVKVGQRNGVDGSPLLPQPILSSLLTPHRNWANAKASLKNQFRAIALFRDRYQLQEKLQSSLNGLCKYQMHFTLACPRLPPARTTSLVVLVPLIVFCAK
        MEVKVGQRNGVD SPLLPQPIL SLLTPHRNWANAKASLKNQFRAIALFRDRYQLQEKLQSSLNGLCKYQMHFTLACPRLPPARTTSLVVLVPLIVFCAK
Subjt:  MEVKVGQRNGVDGSPLLPQPILSSLLTPHRNWANAKASLKNQFRAIALFRDRYQLQEKLQSSLNGLCKYQMHFTLACPRLPPARTTSLVVLVPLIVFCAK

Query:  CIIGASYARVFGTSRLKPVKEPEGERHNFRSGHWRSALREIRELDGLDSESSIYSTSPSEEQQISVEDLSHAYKKLDQEYDKFLSECGLSKWGYWRGGAQ
        CIIGASYARVFGTSRLKPVKEPEGE HNFRSGHWRSALREIREL+GLDSESSIYSTSPSEEQQISVEDLSHAYKKLDQ+YDKFLSECGLSK GYWRGGAQ
Subjt:  CIIGASYARVFGTSRLKPVKEPEGERHNFRSGHWRSALREIRELDGLDSESSIYSTSPSEEQQISVEDLSHAYKKLDQEYDKFLSECGLSKWGYWRGGAQ

Query:  RPGQE
        RPGQE
Subjt:  RPGQE

XP_022973434.1 uncharacterized protein LOC111471976 [Cucurbita maxima]1.4e-10494.63Show/hide
Query:  MEVKVGQRNGVDGSPLLPQPILSSLLTPHRNWANAKASLKNQFRAIALFRDRYQLQEKLQSSLNGLCKYQMHFTLACPRLPPARTTSLVVLVPLIVFCAK
        MEVKVGQRNGVD SPLLPQPIL SLLTPHRNWANAK SLKN FRAIALFRDRYQLQEKLQSSLNGLCKY+MHFTLACPRLPPARTTSL+VLVPLIVFCA 
Subjt:  MEVKVGQRNGVDGSPLLPQPILSSLLTPHRNWANAKASLKNQFRAIALFRDRYQLQEKLQSSLNGLCKYQMHFTLACPRLPPARTTSLVVLVPLIVFCAK

Query:  CIIGASYARVFGTSRLKPVKEPEGERHNFRSGHWRSALREIRELDGLDSESSIYSTSPSEEQQISVEDLSHAYKKLDQEYDKFLSECGLSKWGYWRGGAQ
        CIIGASYARVFGTSRLKPVKEPEGERHNFR+GHWRSALREIRELDGLDSESSIYST PSEE QISVEDLSHAYKKLDQEYDKFLSECGLSK GYWRGGAQ
Subjt:  CIIGASYARVFGTSRLKPVKEPEGERHNFRSGHWRSALREIRELDGLDSESSIYSTSPSEEQQISVEDLSHAYKKLDQEYDKFLSECGLSKWGYWRGGAQ

Query:  RPGQE
        RPGQE
Subjt:  RPGQE

XP_023522372.1 uncharacterized protein LOC111786288 [Cucurbita pepo subsp. pepo]1.7e-10595.63Show/hide
Query:  MEVKVGQRNGVDGSPLLPQPILSSLLTPHRNWANAKASLKNQFRAIALFRDRYQLQEKLQSSLNGLCKYQMHFTLACPRLPPARTTSLVVLVPLIVFCAK
        MEVKVGQRNGV  SPLLPQPIL SLLTPHRNWANAK SLKN FRAIALFRDRYQLQEKLQSSLNGL KYQMHFTLACPRLPPARTTSLVVLVPLIVFCAK
Subjt:  MEVKVGQRNGVDGSPLLPQPILSSLLTPHRNWANAKASLKNQFRAIALFRDRYQLQEKLQSSLNGLCKYQMHFTLACPRLPPARTTSLVVLVPLIVFCAK

Query:  CIIGASYARVFGTSRLKPVKEPEGERHNFRSGHWRSALREIRELDGLDSESSIYSTSPSEEQQISVEDLSHAYKKLDQEYDKFLSECGLSKWGYWRGGAQ
        CIIGASYARVFGTSRLKPVKEPEGERHNFRSGHWRSALREIRELDGLDSESSIYSTSPSEEQQISVEDLSHAY+KLDQ+YDKFLSECGLSKWGYWRGGAQ
Subjt:  CIIGASYARVFGTSRLKPVKEPEGERHNFRSGHWRSALREIRELDGLDSESSIYSTSPSEEQQISVEDLSHAYKKLDQEYDKFLSECGLSKWGYWRGGAQ

Query:  -RPGQE
         RPGQE
Subjt:  -RPGQE

TrEMBL top hitse value%identityAlignment
A0A1S3CBV5 uncharacterized protein LOC103498697 isoform X24.9e-6652.16Show/hide
Query:  MEVKVGQRNGVDGSPLLPQPILSSLLTPHRNWANAKASLKNQFRAIAL----------------------------------------------------
        MEVKV QRN      LLP P L SL    RNWAN K S  NQ R I+L                                                    
Subjt:  MEVKVGQRNGVDGSPLLPQPILSSLLTPHRNWANAKASLKNQFRAIAL----------------------------------------------------

Query:  ---------------------FRDRYQLQEKLQSSLNGLCKYQMHFTLACPRLPPARTTSLVVLVPLIVFCAKCIIGASYARVFGTSRLKPVKEPEGERH
                              RD +QL+EKLQ++LNGL  Y+  F LA  RLPPARTTS +VLVPL++FC +CIIGASYARVFGT +LK + + EGERH
Subjt:  ---------------------FRDRYQLQEKLQSSLNGLCKYQMHFTLACPRLPPARTTSLVVLVPLIVFCAKCIIGASYARVFGTSRLKPVKEPEGERH

Query:  NFRSGHWRSALREIRELDGLDSESSIYSTSPSEEQQISVEDLSHAYKKLDQEYDKFLSECGLSKWGYWRGGAQRPGQE
         FRSGHWRSALR+IRELDGLD E+ I STSPSE++QISVEDLSHAYKKLDQ+Y+KFLSECGLSKWGYWRGG QRP QE
Subjt:  NFRSGHWRSALREIRELDGLDSESSIYSTSPSEEQQISVEDLSHAYKKLDQEYDKFLSECGLSKWGYWRGGAQRPGQE

A0A5A7T6Z4 LysM domain-containing protein1.1e-6552.16Show/hide
Query:  MEVKVGQRNGVDGSPLLPQPILSSLLTPHRNWANAKASLKNQFRAIAL----------------------------------------------------
        MEVKV QRN      LLP P L SL    RNWAN K S  NQ R I+L                                                    
Subjt:  MEVKVGQRNGVDGSPLLPQPILSSLLTPHRNWANAKASLKNQFRAIAL----------------------------------------------------

Query:  ---------------------FRDRYQLQEKLQSSLNGLCKYQMHFTLACPRLPPARTTSLVVLVPLIVFCAKCIIGASYARVFGTSRLKPVKEPEGERH
                              RD +QL+EKLQS+LNGL  Y+  F LA  RLPPARTTS +VLVPL++FC +CIIGASYARVFGT +LK + + EGERH
Subjt:  ---------------------FRDRYQLQEKLQSSLNGLCKYQMHFTLACPRLPPARTTSLVVLVPLIVFCAKCIIGASYARVFGTSRLKPVKEPEGERH

Query:  NFRSGHWRSALREIRELDGLDSESSIYSTSPSEEQQISVEDLSHAYKKLDQEYDKFLSECGLSKWGYWRGGAQRPGQE
         FRSGHWRSALR+IRELDGLD E+ I STSPS ++QISVEDLSHAYKKLDQ+Y+KFLSECGLSKWGYWRGG QRP QE
Subjt:  NFRSGHWRSALREIRELDGLDSESSIYSTSPSEEQQISVEDLSHAYKKLDQEYDKFLSECGLSKWGYWRGGAQRPGQE

A0A6J1GC34 uncharacterized protein LOC111452617 isoform X21.3e-7997.44Show/hide
Query:  MEVKVGQRNGVDGSPLLPQPILSSLLTPHRNWANAKASLKNQFRAIALFRDRYQLQEKLQSSLNGLCKYQMHFTLACPRLPPARTTSLVVLVPLIVFCAK
        MEVKVGQRNGVD SPLLPQPIL SLLTPHRNWANAKASLKNQFRAIALFRDRYQLQEKLQSSLNGLCKYQMHFTLACPRLPPARTTSLVVLVPLIVFCAK
Subjt:  MEVKVGQRNGVDGSPLLPQPILSSLLTPHRNWANAKASLKNQFRAIALFRDRYQLQEKLQSSLNGLCKYQMHFTLACPRLPPARTTSLVVLVPLIVFCAK

Query:  CIIGASYARVFGTSRLKPVKEPEGERHNFRSGHWRSALREIRELDGLDSESSIYST
        CIIGASYARVFGTSRLKPVKEPEGE HNFRSGHWRSALREIREL+GLDSESSIYST
Subjt:  CIIGASYARVFGTSRLKPVKEPEGERHNFRSGHWRSALREIRELDGLDSESSIYST

A0A6J1GC39 uncharacterized protein LOC111452617 isoform X16.8e-10897.07Show/hide
Query:  MEVKVGQRNGVDGSPLLPQPILSSLLTPHRNWANAKASLKNQFRAIALFRDRYQLQEKLQSSLNGLCKYQMHFTLACPRLPPARTTSLVVLVPLIVFCAK
        MEVKVGQRNGVD SPLLPQPIL SLLTPHRNWANAKASLKNQFRAIALFRDRYQLQEKLQSSLNGLCKYQMHFTLACPRLPPARTTSLVVLVPLIVFCAK
Subjt:  MEVKVGQRNGVDGSPLLPQPILSSLLTPHRNWANAKASLKNQFRAIALFRDRYQLQEKLQSSLNGLCKYQMHFTLACPRLPPARTTSLVVLVPLIVFCAK

Query:  CIIGASYARVFGTSRLKPVKEPEGERHNFRSGHWRSALREIRELDGLDSESSIYSTSPSEEQQISVEDLSHAYKKLDQEYDKFLSECGLSKWGYWRGGAQ
        CIIGASYARVFGTSRLKPVKEPEGE HNFRSGHWRSALREIREL+GLDSESSIYSTSPSEEQQISVEDLSHAYKKLDQ+YDKFLSECGLSK GYWRGGAQ
Subjt:  CIIGASYARVFGTSRLKPVKEPEGERHNFRSGHWRSALREIRELDGLDSESSIYSTSPSEEQQISVEDLSHAYKKLDQEYDKFLSECGLSKWGYWRGGAQ

Query:  RPGQE
        RPGQE
Subjt:  RPGQE

A0A6J1IEK4 uncharacterized protein LOC1114719767.0e-10594.63Show/hide
Query:  MEVKVGQRNGVDGSPLLPQPILSSLLTPHRNWANAKASLKNQFRAIALFRDRYQLQEKLQSSLNGLCKYQMHFTLACPRLPPARTTSLVVLVPLIVFCAK
        MEVKVGQRNGVD SPLLPQPIL SLLTPHRNWANAK SLKN FRAIALFRDRYQLQEKLQSSLNGLCKY+MHFTLACPRLPPARTTSL+VLVPLIVFCA 
Subjt:  MEVKVGQRNGVDGSPLLPQPILSSLLTPHRNWANAKASLKNQFRAIALFRDRYQLQEKLQSSLNGLCKYQMHFTLACPRLPPARTTSLVVLVPLIVFCAK

Query:  CIIGASYARVFGTSRLKPVKEPEGERHNFRSGHWRSALREIRELDGLDSESSIYSTSPSEEQQISVEDLSHAYKKLDQEYDKFLSECGLSKWGYWRGGAQ
        CIIGASYARVFGTSRLKPVKEPEGERHNFR+GHWRSALREIRELDGLDSESSIYST PSEE QISVEDLSHAYKKLDQEYDKFLSECGLSK GYWRGGAQ
Subjt:  CIIGASYARVFGTSRLKPVKEPEGERHNFRSGHWRSALREIRELDGLDSESSIYSTSPSEEQQISVEDLSHAYKKLDQEYDKFLSECGLSKWGYWRGGAQ

Query:  RPGQE
        RPGQE
Subjt:  RPGQE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G09970.1 unknown protein3.9e-0732.71Show/hide
Query:  LVVLVPLIVFCAKCIIGASYARVFGTSRLKPVKEPEGERHNFRSGHWRSALREIRE---LDGLDSESSIYSTSPSEEQQISVEDLSHAYKKLDQEYDKFL
        L  L+P++ FC  CIIG  +  +   SR    K  +G  H   S  WR+AL +  E    DG DS S  Y  + + ++  + ++++ AY +++ EY +FL
Subjt:  LVVLVPLIVFCAKCIIGASYARVFGTSRLKPVKEPEGERHNFRSGHWRSALREIRE---LDGLDSESSIYSTSPSEEQQISVEDLSHAYKKLDQEYDKFL

Query:  SECGLSK
         ECG+ +
Subjt:  SECGLSK

AT4G09970.2 unknown protein1.3e-0531.73Show/hide
Query:  LVVLVPLIVFCAKCIIGASYARVFGTSRLKPVKEPEGERHNFRSGHWRSALREIRELDGLDSESSIYSTSPSEEQQISVEDLSHAYKKLDQEYDKFLSEC
        L  L+P++ FC  CIIG  +  +   SR    K  +G  H   S  WR+AL +  E    D   S+   SP   +  + ++++ AY +++ EY +FL EC
Subjt:  LVVLVPLIVFCAKCIIGASYARVFGTSRLKPVKEPEGERHNFRSGHWRSALREIRELDGLDSESSIYSTSPSEEQQISVEDLSHAYKKLDQEYDKFLSEC

Query:  GLSK
        G+ +
Subjt:  GLSK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGTGAAGGTCGGGCAGAGAAATGGAGTAGACGGTTCTCCTCTTCTCCCACAACCAATTCTCTCTTCTCTTCTAACTCCTCACAGAAATTGGGCCAACGCCAAAGC
ATCCTTGAAGAATCAATTCAGAGCCATTGCGCTGTTTAGAGATAGATATCAATTGCAAGAAAAGCTTCAGAGTTCTTTGAATGGACTTTGTAAATATCAAATGCATTTCA
CGCTTGCCTGCCCCCGACTACCTCCTGCTAGAACCACTAGTTTGGTAGTTTTGGTTCCCCTCATAGTATTTTGTGCCAAATGCATAATTGGTGCCTCTTATGCTAGAGTG
TTCGGAACATCGAGGCTTAAACCCGTTAAGGAACCAGAGGGAGAACGTCACAACTTCAGAAGCGGCCATTGGAGATCTGCTCTTCGAGAGATAAGGGAATTGGATGGATT
GGATTCTGAGTCCTCCATATATTCTACTAGCCCTTCAGAAGAACAACAGATCTCAGTTGAAGATTTGTCACATGCTTACAAAAAACTGGATCAGGAGTACGACAAATTTC
TATCAGAATGTGGACTGAGTAAATGGGGCTACTGGCGAGGAGGTGCGCAGAGACCTGGACAGGAATAG
mRNA sequenceShow/hide mRNA sequence
AAAAAGAAAACAAAAATATGTCATCAGAAAATAGGCAATAGGCATGGCGAAATTTGAAGGGTTTGTGCGATGGAAGTGAAGGTCGGGCAGAGAAATGGAGTAGACGGTTC
TCCTCTTCTCCCACAACCAATTCTCTCTTCTCTTCTAACTCCTCACAGAAATTGGGCCAACGCCAAAGCATCCTTGAAGAATCAATTCAGAGCCATTGCGCTGTTTAGAG
ATAGATATCAATTGCAAGAAAAGCTTCAGAGTTCTTTGAATGGACTTTGTAAATATCAAATGCATTTCACGCTTGCCTGCCCCCGACTACCTCCTGCTAGAACCACTAGT
TTGGTAGTTTTGGTTCCCCTCATAGTATTTTGTGCCAAATGCATAATTGGTGCCTCTTATGCTAGAGTGTTCGGAACATCGAGGCTTAAACCCGTTAAGGAACCAGAGGG
AGAACGTCACAACTTCAGAAGCGGCCATTGGAGATCTGCTCTTCGAGAGATAAGGGAATTGGATGGATTGGATTCTGAGTCCTCCATATATTCTACTAGCCCTTCAGAAG
AACAACAGATCTCAGTTGAAGATTTGTCACATGCTTACAAAAAACTGGATCAGGAGTACGACAAATTTCTATCAGAATGTGGACTGAGTAAATGGGGCTACTGGCGAGGA
GGTGCGCAGAGACCTGGACAGGAATAGGCAATCTTTGCAGCACTTCTCTGTGCTCCCTAGCCATCCAAAAGGGGCTAGGCTAGGGAGTTCTTTGTAGCAACCATTTTTCA
GGTGTTGTATTGTAGTGGAGTAAAAAGTTCAACCCAGTAATGTAATTAAACTTTAAATTGGACAAAATTTATGCATTCTGCATCCAATTTGCTACAACTCTTAACAAAGA
ACACCCATGACCGGAGTCTCGCCGGGATTCTTAGTCTCTTTGAGCTTTGCATCGGCGCACTCATCCACTTCCTCCTCCCCCCGCCATGGAGCTGAAGATGCCAACTGCTT
CTTCTTCGCCATTTTTCCGCCCAGCCCAAATTCCTCATGACAGCCGTAAGAGGCCTCAGTTTATAGGGCCCCCATTCTTGATACTCTTGAGTTTACTGCTCAGACCCATT
AATATTCACTGAGATTTAGTCGGCCATCCAAAAATGAGAGCACGGTCGGTTTCTAGAAGCATAAGATCGTTTTACAGTGTTGATAAGGATATAACTGGGAAGTCAAATTG
AAGAGCATGTTGTTTTCTTTGTGGGGTTTGATCTCTTTGAGCTAACCCCAACAGGTTTCTAATAATTCTATCTAAATTTATTTAGTCCACGTAGAGACCATCTGTCATGT
AAGTTTTAGAAGAAAAAAAATGCAAAGTAAGTAAAAAGAACAGAGATTCAAACATGGGAAGAGCTAATTAAAAGAA
Protein sequenceShow/hide protein sequence
MEVKVGQRNGVDGSPLLPQPILSSLLTPHRNWANAKASLKNQFRAIALFRDRYQLQEKLQSSLNGLCKYQMHFTLACPRLPPARTTSLVVLVPLIVFCAKCIIGASYARV
FGTSRLKPVKEPEGERHNFRSGHWRSALREIRELDGLDSESSIYSTSPSEEQQISVEDLSHAYKKLDQEYDKFLSECGLSKWGYWRGGAQRPGQE