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Carg28078 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg28078
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionDNA-directed RNA polymerase
Genome locationCarg_Chr06:3616375..3617155
RNA-Seq ExpressionCarg28078
SyntenyCarg28078
Gene Ontology termsGO:0016779 - nucleotidyltransferase activity (molecular function)
GO:0097159 - organic cyclic compound binding (molecular function)
GO:1901363 - heterocyclic compound binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6573766.1 DNA-directed RNA polymerase III subunit 2, partial [Cucurbita argyrosperma subsp. sororia]1.6e-0466.67Show/hide
Query:  IVKANDRIESSNDRTYLRYFATGMRMLRRAGKIGEFINVFVNEKQ
        +V  N RI   + R   +YFATGMRMLRRAGKIGEF++VFVNEKQ
Subjt:  IVKANDRIESSNDRTYLRYFATGMRMLRRAGKIGEFINVFVNEKQ

KAG6596780.1 Subtilisin-like protease 5.3, partial [Cucurbita argyrosperma subsp. sororia]3.1e-4597.94Show/hide
Query:  NGKQVDDPNAIDLDIDKKFLGLPIKSAVDKFQLIPAFFKPMIINAHSLIIWFQVRGLVRQRLRFLNYFVNTEIKKIVKANDRIESSNDRTYLRYFAT
        NGKQVDDPNAIDLD DKKFLGLPIKSAVDKFQLIPAFFKP+IINAHSLIIWFQVRGLVRQRLRFLNYFVNTEIKKIVKANDRIESSNDRTYLRYFAT
Subjt:  NGKQVDDPNAIDLDIDKKFLGLPIKSAVDKFQLIPAFFKPMIINAHSLIIWFQVRGLVRQRLRFLNYFVNTEIKKIVKANDRIESSNDRTYLRYFAT

KAG6596781.1 DNA-directed RNA polymerase III subunit 2, partial [Cucurbita argyrosperma subsp. sororia]4.5e-6099.17Show/hide
Query:  RNGKQVDDPNAIDLDIDKKFLGLPIKSAVDKFQLIPAFFKPMIINAHSLIIWFQVRGLVRQRLRFLNYFVNTEIKKIVKANDRIESSNDRTYLRYFATGM
        +NGKQVDDPNAIDLDIDKKFLGLPIKSAVDKFQLIPAFFKPMIINAHSLIIWFQVRGLVRQRLRFLNYFVNTEIKKIVKANDRIESSNDRTYLRYFATGM
Subjt:  RNGKQVDDPNAIDLDIDKKFLGLPIKSAVDKFQLIPAFFKPMIINAHSLIIWFQVRGLVRQRLRFLNYFVNTEIKKIVKANDRIESSNDRTYLRYFATGM

Query:  RMLRRAGKIGEFINVFVNEKQ
        RMLRRAGKIGEFINVFVNEKQ
Subjt:  RMLRRAGKIGEFINVFVNEKQ

KAG7028311.1 DNA-directed RNA polymerase III subunit 2, partial [Cucurbita argyrosperma subsp. argyrosperma]5.8e-76100Show/hide
Query:  MESLKLRSHGREAVGWRFKHDKICRNGKQVDDPNAIDLDIDKKFLGLPIKSAVDKFQLIPAFFKPMIINAHSLIIWFQVRGLVRQRLRFLNYFVNTEIKK
        MESLKLRSHGREAVGWRFKHDKICRNGKQVDDPNAIDLDIDKKFLGLPIKSAVDKFQLIPAFFKPMIINAHSLIIWFQVRGLVRQRLRFLNYFVNTEIKK
Subjt:  MESLKLRSHGREAVGWRFKHDKICRNGKQVDDPNAIDLDIDKKFLGLPIKSAVDKFQLIPAFFKPMIINAHSLIIWFQVRGLVRQRLRFLNYFVNTEIKK

Query:  IVKANDRIESSNDRTYLRYFATGMRMLRRAGKIGEFINVFVNEKQ
        IVKANDRIESSNDRTYLRYFATGMRMLRRAGKIGEFINVFVNEKQ
Subjt:  IVKANDRIESSNDRTYLRYFATGMRMLRRAGKIGEFINVFVNEKQ

XP_023541760.1 DNA-directed RNA polymerase III subunit 2 [Cucurbita pepo subsp. pepo]3.4e-2367Show/hide
Query:  DKICRNGKQVDDPNAIDLDIDKKFLGLPIKSAVDKFQLIPAFFKPMIINAHSLIIWFQVRGLVRQRLRFLNYFVNTEIKKIVKANDRIESSNDRT-YLRY
        D   +NGKQVDDPNAI  DIDK+FLGLPIKSAVDKFQL+P F K              VRGLVRQ L   NYFVNTEIKKIVKANDRIESS D + YLR+
Subjt:  DKICRNGKQVDDPNAIDLDIDKKFLGLPIKSAVDKFQLIPAFFKPMIINAHSLIIWFQVRGLVRQRLRFLNYFVNTEIKKIVKANDRIESSNDRT-YLRY

XP_023541760.1 DNA-directed RNA polymerase III subunit 2 [Cucurbita pepo subsp. pepo]1.6e-0466.67Show/hide
Query:  IVKANDRIESSNDRTYLRYFATGMRMLRRAGKIGEFINVFVNEKQ
        +V  N RI   + R   +YFATGMRMLRRAGKIGEF++VFVNEKQ
Subjt:  IVKANDRIESSNDRTYLRYFATGMRMLRRAGKIGEFINVFVNEKQ

XP_023541760.1 DNA-directed RNA polymerase III subunit 2 [Cucurbita pepo subsp. pepo]3.4e-2367Show/hide
Query:  DKICRNGKQVDDPNAIDLDIDKKFLGLPIKSAVDKFQLIPAFFKPMIINAHSLIIWFQVRGLVRQRLRFLNYFVNTEIKKIVKANDRIESSNDRT-YLRY
        D   +NGKQVDDPNAI  DIDK+FLGLPIKSAVDKFQL+P F K              VRGLVRQ L   NYFVNTEIKKIVKANDRIESS D + YLR+
Subjt:  DKICRNGKQVDDPNAIDLDIDKKFLGLPIKSAVDKFQLIPAFFKPMIINAHSLIIWFQVRGLVRQRLRFLNYFVNTEIKKIVKANDRIESSNDRT-YLRY

TrEMBL top hitse value%identityAlignment
A0A1S3CIH7 DNA-directed RNA polymerase subunit beta7.6e-0566.67Show/hide
Query:  IVKANDRIESSNDRTYLRYFATGMRMLRRAGKIGEFINVFVNEKQ
        +V  N RI   + R   +YFATGMRMLRRAGKIGEF++VFVNEKQ
Subjt:  IVKANDRIESSNDRTYLRYFATGMRMLRRAGKIGEFINVFVNEKQ

A0A5A7UBS2 DNA-directed RNA polymerase subunit beta2.2e-2063.54Show/hide
Query:  RNGKQVDDPNAIDLDIDKKFLGLPIKSAVDKFQLIPAFFKPMIINAHSLIIWFQVRGLVRQRLRFLNYFVNTEIKKIVKANDRIESSNDRT-YLRY
        +N KQ DD N ID DIDK+F+GLPIKSAVDKFQL+P F K              VRGLV+Q L   NYFVNTEIKKIVKANDRIESS D + YLR+
Subjt:  RNGKQVDDPNAIDLDIDKKFLGLPIKSAVDKFQLIPAFFKPMIINAHSLIIWFQVRGLVRQRLRFLNYFVNTEIKKIVKANDRIESSNDRT-YLRY

A0A5A7UBS2 DNA-directed RNA polymerase subunit beta7.6e-0566.67Show/hide
Query:  IVKANDRIESSNDRTYLRYFATGMRMLRRAGKIGEFINVFVNEKQ
        +V  N RI   + R   +YFATGMRMLRRAGKIGEF++VFVNEKQ
Subjt:  IVKANDRIESSNDRTYLRYFATGMRMLRRAGKIGEFINVFVNEKQ

A0A5A7UBS2 DNA-directed RNA polymerase subunit beta2.2e-2063.54Show/hide
Query:  RNGKQVDDPNAIDLDIDKKFLGLPIKSAVDKFQLIPAFFKPMIINAHSLIIWFQVRGLVRQRLRFLNYFVNTEIKKIVKANDRIESSNDRT-YLRY
        +N KQ DD N ID DIDK+F+GLPIKSAVDKFQL+P F K              VRGLV+Q L   NYFVNTEIKKIVKANDRIESS D + YLR+
Subjt:  RNGKQVDDPNAIDLDIDKKFLGLPIKSAVDKFQLIPAFFKPMIINAHSLIIWFQVRGLVRQRLRFLNYFVNTEIKKIVKANDRIESSNDRT-YLRY

A0A6J1G1X8 DNA-directed RNA polymerase subunit beta1.6e-2367Show/hide
Query:  DKICRNGKQVDDPNAIDLDIDKKFLGLPIKSAVDKFQLIPAFFKPMIINAHSLIIWFQVRGLVRQRLRFLNYFVNTEIKKIVKANDRIESSNDRT-YLRY
        D   +NGKQVDDPNAI  DIDK+FLGLPIKSAVDKFQL+P F K              VRGLVRQ L   NYFVNTEIKKIVKANDRIESS D + YLR+
Subjt:  DKICRNGKQVDDPNAIDLDIDKKFLGLPIKSAVDKFQLIPAFFKPMIINAHSLIIWFQVRGLVRQRLRFLNYFVNTEIKKIVKANDRIESSNDRT-YLRY

A0A6J1G1X8 DNA-directed RNA polymerase subunit beta7.6e-0566.67Show/hide
Query:  IVKANDRIESSNDRTYLRYFATGMRMLRRAGKIGEFINVFVNEKQ
        +V  N RI   + R   +YFATGMRMLRRAGKIGEF++VFVNEKQ
Subjt:  IVKANDRIESSNDRTYLRYFATGMRMLRRAGKIGEFINVFVNEKQ

A0A6J1G1X8 DNA-directed RNA polymerase subunit beta4.7e-2367.71Show/hide
Query:  RNGKQVDDPNAIDLDIDKKFLGLPIKSAVDKFQLIPAFFKPMIINAHSLIIWFQVRGLVRQRLRFLNYFVNTEIKKIVKANDRIESSNDRT-YLRY
        +NGKQVDDPNAI  DIDK+FLGLPIKSAVDKFQL+P F K              VRGLVRQ L   NYFVNTEIKKIVKANDRI+SS D + YLR+
Subjt:  RNGKQVDDPNAIDLDIDKKFLGLPIKSAVDKFQLIPAFFKPMIINAHSLIIWFQVRGLVRQRLRFLNYFVNTEIKKIVKANDRIESSNDRT-YLRY

A0A6J1HQP0 DNA-directed RNA polymerase subunit beta7.6e-0566.67Show/hide
Query:  IVKANDRIESSNDRTYLRYFATGMRMLRRAGKIGEFINVFVNEKQ
        +V  N RI   + R   +YFATGMRMLRRAGKIGEF++VFVNEKQ
Subjt:  IVKANDRIESSNDRTYLRYFATGMRMLRRAGKIGEFINVFVNEKQ

A0A6J1HQP0 DNA-directed RNA polymerase subunit beta4.4e-2165.96Show/hide
Query:  GKQVDDPNAIDLDIDKKFLGLPIKSAVDKFQLIPAFFKPMIINAHSLIIWFQVRGLVRQRLRFLNYFVNTEIKKIVKANDRIESSNDRT-YLRY
        GKQVD P+ ID DIDK+FLGLPIKSAVDKFQL+P F K              VRGLVRQ L   NYFVNTEIKKIVKANDRIESS D + YL++
Subjt:  GKQVDDPNAIDLDIDKKFLGLPIKSAVDKFQLIPAFFKPMIINAHSLIIWFQVRGLVRQRLRFLNYFVNTEIKKIVKANDRIESSNDRT-YLRY

SwissProt top hitse value%identityAlignment
F4KD38 DNA-directed RNA polymerase III subunit 28.9e-1150.62Show/hide
Query:  IDKKFLGLPIKSAVDKFQLIPAFFKPMIINAHSLIIWFQVRGLVRQRLRFLNYFVNTEIKKIVKANDRIESSNDRT-YLRY
        IDK+ L  PIKS  DKFQL+P F K              VRGLV+Q L   NYF+N  I KIVKAN RI S+ D + YLR+
Subjt:  IDKKFLGLPIKSAVDKFQLIPAFFKPMIINAHSLIIWFQVRGLVRQRLRFLNYFVNTEIKKIVKANDRIESSNDRT-YLRY

F4KD38 DNA-directed RNA polymerase III subunit 22.8e-0471.43Show/hide
Query:  RYFATGMRMLRRAGKIGEFINVFVNEKQ
        +YFA  +R LRRAGKIGEF++VF NEKQ
Subjt:  RYFATGMRMLRRAGKIGEFINVFVNEKQ

P25167 DNA-directed RNA polymerase III subunit RPC25.4e-0834.17Show/hide
Query:  MESLKLRSHGREAVGWRFKHDKICRNGKQVDDPNAIDLDIDKKFLGLPIKSAVDKFQLIPAFFKPMIINAHSLIIWFQVRGLVRQRLRFLNYFVNTEIKK
        M  LK+  H  EA  W               DP       D K   +PIK   +K++L+PAF               QV+GLV+Q +   N+F+N +IKK
Subjt:  MESLKLRSHGREAVGWRFKHDKICRNGKQVDDPNAIDLDIDKKFLGLPIKSAVDKFQLIPAFFKPMIINAHSLIIWFQVRGLVRQRLRFLNYFVNTEIKK

Query:  IVKANDRIESSNDRT-YLRY
        IVKAN+ + S  D   YL+Y
Subjt:  IVKANDRIESSNDRT-YLRY

P59470 DNA-directed RNA polymerase III subunit RPC26.0e-0740.79Show/hide
Query:  LGLPIKSAVDKFQLIPAFFKPMIINAHSLIIWFQVRGLVRQRLRFLNYFVNTEIKKIVKANDRIESSND-RTYLRY
        L  PI +  +K++L+PAF K              V+GLV+Q +   NYF+N EIKKI+KAN+++ S  D   YL+Y
Subjt:  LGLPIKSAVDKFQLIPAFFKPMIINAHSLIIWFQVRGLVRQRLRFLNYFVNTEIKKIVKANDRIESSND-RTYLRY

Q54IZ9 DNA-directed RNA polymerase III subunit rpc26.0e-0740.28Show/hide
Query:  IKSAVDKFQLIPAFFKPMIINAHSLIIWFQVRGLVRQRLRFLNYFVNTEIKKIVKANDRIESSNDRTYLRYF
        IK   +K++L+PAF K               RGLV+Q +   N+F+N E+KKIVKAN+R+ + ND +Y   F
Subjt:  IKSAVDKFQLIPAFFKPMIINAHSLIIWFQVRGLVRQRLRFLNYFVNTEIKKIVKANDRIESSNDRTYLRYF

Q9NW08 DNA-directed RNA polymerase III subunit RPC23.5e-0740.79Show/hide
Query:  LGLPIKSAVDKFQLIPAFFKPMIINAHSLIIWFQVRGLVRQRLRFLNYFVNTEIKKIVKANDRIESSND-RTYLRY
        L  PI +  +K++L+PAF K              V+GLV+Q +   NYF+N EIKKI+KAN+++ S  D   YL+Y
Subjt:  LGLPIKSAVDKFQLIPAFFKPMIINAHSLIIWFQVRGLVRQRLRFLNYFVNTEIKKIVKANDRIESSND-RTYLRY

Arabidopsis top hitse value%identityAlignment
AT5G45140.1 nuclear RNA polymerase C26.3e-1250.62Show/hide
Query:  IDKKFLGLPIKSAVDKFQLIPAFFKPMIINAHSLIIWFQVRGLVRQRLRFLNYFVNTEIKKIVKANDRIESSNDRT-YLRY
        IDK+ L  PIKS  DKFQL+P F K              VRGLV+Q L   NYF+N  I KIVKAN RI S+ D + YLR+
Subjt:  IDKKFLGLPIKSAVDKFQLIPAFFKPMIINAHSLIIWFQVRGLVRQRLRFLNYFVNTEIKKIVKANDRIESSNDRT-YLRY

AT5G45140.1 nuclear RNA polymerase C22.0e-0571.43Show/hide
Query:  RYFATGMRMLRRAGKIGEFINVFVNEKQ
        +YFA  +R LRRAGKIGEF++VF NEKQ
Subjt:  RYFATGMRMLRRAGKIGEFINVFVNEKQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGTCTCTGAAACTCAGAAGCCATGGTCGTGAAGCCGTCGGATGGCGATTCAAACACGACAAAATCTGTAGGAACGGGAAGCAAGTCGACGATCCTAATGCAATCGA
TTTGGACATTGACAAGAAATTCCTTGGCCTGCCTATCAAGTCAGCCGTCGATAAGTTTCAACTTATTCCTGCATTTTTTAAGCCTATGATTATTAACGCACATAGTTTAA
TCATCTGGTTTCAAGTAAGAGGTCTGGTTCGACAACGCTTGCGATTCCTTAACTACTTCGTGAATACAGAAATTAAAAAGATAGTCAAGGCCAATGATCGAATTGAATCC
AGCAATGATCGTACTTATCTTAGGTACTTTGCTACAGGTATGAGAATGCTGAGGAGAGCTGGAAAAATTGGCGAGTTTATCAATGTGTTTGTGAATGAGAAGCAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGTCTCTGAAACTCAGAAGCCATGGTCGTGAAGCCGTCGGATGGCGATTCAAACACGACAAAATCTGTAGGAACGGGAAGCAAGTCGACGATCCTAATGCAATCGA
TTTGGACATTGACAAGAAATTCCTTGGCCTGCCTATCAAGTCAGCCGTCGATAAGTTTCAACTTATTCCTGCATTTTTTAAGCCTATGATTATTAACGCACATAGTTTAA
TCATCTGGTTTCAAGTAAGAGGTCTGGTTCGACAACGCTTGCGATTCCTTAACTACTTCGTGAATACAGAAATTAAAAAGATAGTCAAGGCCAATGATCGAATTGAATCC
AGCAATGATCGTACTTATCTTAGGTACTTTGCTACAGGTATGAGAATGCTGAGGAGAGCTGGAAAAATTGGCGAGTTTATCAATGTGTTTGTGAATGAGAAGCAG
Protein sequenceShow/hide protein sequence
MESLKLRSHGREAVGWRFKHDKICRNGKQVDDPNAIDLDIDKKFLGLPIKSAVDKFQLIPAFFKPMIINAHSLIIWFQVRGLVRQRLRFLNYFVNTEIKKIVKANDRIES
SNDRTYLRYFATGMRMLRRAGKIGEFINVFVNEKQ