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Carg28079 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg28079
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionDNA-directed RNA polymerase subunit beta
Genome locationCarg_Chr06:3613771..3614153
RNA-Seq ExpressionCarg28079
SyntenyCarg28079
Gene Ontology termsGO:0006351 - transcription, DNA-templated (biological process)
GO:0003677 - DNA binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
InterPro domainsIPR007645 - RNA polymerase Rpb2, domain 3


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6573766.1 DNA-directed RNA polymerase III subunit 2, partial [Cucurbita argyrosperma subsp. sororia]9.7e-0866.04Show/hide
Query:  VLAMLSFISTMGHVTRVSPHSLRSPGKLVDEDHYNLVSGWGMLCPCDTPEGEA
        VLA LSFISTMGHVTRVSP   +S  + V        S WGMLCPCDTPEGEA
Subjt:  VLAMLSFISTMGHVTRVSPHSLRSPGKLVDEDHYNLVSGWGMLCPCDTPEGEA
KAG6596781.1 DNA-directed RNA polymerase III subunit 2, partial [Cucurbita argyrosperma subsp. sororia]2.5e-3295.89Show/hide
Query:  VLAMLSFISTMGHVTRVSPHSLRSPGKLVDEDHYNLV--SGWGMLCPCDTPEGEAGSMTFFGIAHNHYFFNSI
        VLA LSFISTMGHVTRVSPHSLRSPGKLVDEDHYNLV  SGWGMLCPCDTPEGEAGSMTFFGIAHNHYFFNSI
Subjt:  VLAMLSFISTMGHVTRVSPHSLRSPGKLVDEDHYNLV--SGWGMLCPCDTPEGEAGSMTFFGIAHNHYFFNSI
KAG7028310.1 DNA-directed RNA polymerase III subunit 2, partial [Cucurbita argyrosperma subsp. argyrosperma]1.6e-34100Show/hide
Query:  VLAMLSFISTMGHVTRVSPHSLRSPGKLVDEDHYNLVSGWGMLCPCDTPEGEAGSMTFFGIAHNHYFFNSI
        VLAMLSFISTMGHVTRVSPHSLRSPGKLVDEDHYNLVSGWGMLCPCDTPEGEAGSMTFFGIAHNHYFFNSI
Subjt:  VLAMLSFISTMGHVTRVSPHSLRSPGKLVDEDHYNLVSGWGMLCPCDTPEGEAGSMTFFGIAHNHYFFNSI
XP_022966941.1 DNA-directed RNA polymerase III subunit 2 isoform X1 [Cucurbita maxima]9.7e-0866.04Show/hide
Query:  VLAMLSFISTMGHVTRVSPHSLRSPGKLVDEDHYNLVSGWGMLCPCDTPEGEA
        VLA LSFISTMGHVTRVSP   +S  + V        S WGMLCPCDTPEGEA
Subjt:  VLAMLSFISTMGHVTRVSPHSLRSPGKLVDEDHYNLVSGWGMLCPCDTPEGEA
XP_023541760.1 DNA-directed RNA polymerase III subunit 2 [Cucurbita pepo subsp. pepo]9.7e-0866.04Show/hide
Query:  VLAMLSFISTMGHVTRVSPHSLRSPGKLVDEDHYNLVSGWGMLCPCDTPEGEA
        VLA LSFISTMGHVTRVSP   +S  + V        S WGMLCPCDTPEGEA
Subjt:  VLAMLSFISTMGHVTRVSPHSLRSPGKLVDEDHYNLVSGWGMLCPCDTPEGEA
TrEMBL top hitse value%identityAlignment
A0A5A7UBS2 DNA-directed RNA polymerase subunit beta4.7e-0866.04Show/hide
Query:  VLAMLSFISTMGHVTRVSPHSLRSPGKLVDEDHYNLVSGWGMLCPCDTPEGEA
        VLA LSFISTMGHVTRVSP   +S  + V        S WGMLCPCDTPEGEA
Subjt:  VLAMLSFISTMGHVTRVSPHSLRSPGKLVDEDHYNLVSGWGMLCPCDTPEGEA
A0A6J1CEJ1 DNA-directed RNA polymerase subunit beta4.7e-0866.04Show/hide
Query:  VLAMLSFISTMGHVTRVSPHSLRSPGKLVDEDHYNLVSGWGMLCPCDTPEGEA
        VLA LSFISTMGHVTRVSP   +S  + V        S WGMLCPCDTPEGEA
Subjt:  VLAMLSFISTMGHVTRVSPHSLRSPGKLVDEDHYNLVSGWGMLCPCDTPEGEA
A0A6J1G1X8 DNA-directed RNA polymerase subunit beta4.7e-0866.04Show/hide
Query:  VLAMLSFISTMGHVTRVSPHSLRSPGKLVDEDHYNLVSGWGMLCPCDTPEGEA
        VLA LSFISTMGHVTRVSP   +S  + V        S WGMLCPCDTPEGEA
Subjt:  VLAMLSFISTMGHVTRVSPHSLRSPGKLVDEDHYNLVSGWGMLCPCDTPEGEA
A0A6J1HQP0 DNA-directed RNA polymerase subunit beta4.7e-0866.04Show/hide
Query:  VLAMLSFISTMGHVTRVSPHSLRSPGKLVDEDHYNLVSGWGMLCPCDTPEGEA
        VLA LSFISTMGHVTRVSP   +S  + V        S WGMLCPCDTPEGEA
Subjt:  VLAMLSFISTMGHVTRVSPHSLRSPGKLVDEDHYNLVSGWGMLCPCDTPEGEA
A0A6J1HV90 DNA-directed RNA polymerase subunit beta4.7e-0866.04Show/hide
Query:  VLAMLSFISTMGHVTRVSPHSLRSPGKLVDEDHYNLVSGWGMLCPCDTPEGEA
        VLA LSFISTMGHVTRVSP   +S  + V        S WGMLCPCDTPEGEA
Subjt:  VLAMLSFISTMGHVTRVSPHSLRSPGKLVDEDHYNLVSGWGMLCPCDTPEGEA
SwissProt top hitse value%identityAlignment
F4KD38 DNA-directed RNA polymerase III subunit 22.9e-0750.94Show/hide
Query:  VLAMLSFISTMGHVTRVSPHSLRSPGKLVDEDHYNLVSGWGMLCPCDTPEGEA
        VL  LSFI +MG +T++SP   +S  + V        S WGMLCPCDTPEGE+
Subjt:  VLAMLSFISTMGHVTRVSPHSLRSPGKLVDEDHYNLVSGWGMLCPCDTPEGEA
P25167 DNA-directed RNA polymerase III subunit RPC21.0e-0447.17Show/hide
Query:  VLAMLSFISTMGHVTRVSPHSLRSPGKLVDEDHYNLVSGWGMLCPCDTPEGEA
        VL+ LS+IS +G +TRV+    ++  + V        S WGMLCP DTPEGEA
Subjt:  VLAMLSFISTMGHVTRVSPHSLRSPGKLVDEDHYNLVSGWGMLCPCDTPEGEA
P59470 DNA-directed RNA polymerase III subunit RPC26.1e-0547.17Show/hide
Query:  VLAMLSFISTMGHVTRVSPHSLRSPGKLVDEDHYNLVSGWGMLCPCDTPEGEA
        VL+ LS+IS +G +TR+S    ++  + V        S WGMLCP DTPEGEA
Subjt:  VLAMLSFISTMGHVTRVSPHSLRSPGKLVDEDHYNLVSGWGMLCPCDTPEGEA
Q54IZ9 DNA-directed RNA polymerase III subunit rpc21.8e-0447.17Show/hide
Query:  VLAMLSFISTMGHVTRVSPHSLRSPGKLVDEDHYNLVSGWGMLCPCDTPEGEA
        VL+ LS+IS MG +TR+     ++  + V        S WGMLCP DTPEGEA
Subjt:  VLAMLSFISTMGHVTRVSPHSLRSPGKLVDEDHYNLVSGWGMLCPCDTPEGEA
Q9NW08 DNA-directed RNA polymerase III subunit RPC26.1e-0547.17Show/hide
Query:  VLAMLSFISTMGHVTRVSPHSLRSPGKLVDEDHYNLVSGWGMLCPCDTPEGEA
        VL+ LS+IS +G +TR+S    ++  + V        S WGMLCP DTPEGEA
Subjt:  VLAMLSFISTMGHVTRVSPHSLRSPGKLVDEDHYNLVSGWGMLCPCDTPEGEA
Arabidopsis top hitse value%identityAlignment
AT4G21710.1 DNA-directed RNA polymerase family protein5.3e-0439.62Show/hide
Query:  VLAMLSFISTMGHVTRVSPHSLRSPGKLVDEDHYNLVSGWGMLCPCDTPEGEA
        VL  L++ ST+ H+ R++   +   GKL      +  S WGM+CP +TPEG+A
Subjt:  VLAMLSFISTMGHVTRVSPHSLRSPGKLVDEDHYNLVSGWGMLCPCDTPEGEA
AT5G45140.1 nuclear RNA polymerase C22.1e-0850.94Show/hide
Query:  VLAMLSFISTMGHVTRVSPHSLRSPGKLVDEDHYNLVSGWGMLCPCDTPEGEA
        VL  LSFI +MG +T++SP   +S  + V        S WGMLCPCDTPEGE+
Subjt:  VLAMLSFISTMGHVTRVSPHSLRSPGKLVDEDHYNLVSGWGMLCPCDTPEGEA

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GTTCTTGCTATGTTATCTTTTATTTCTACTATGGGTCATGTGACTAGAGTCTCTCCCCACAGTTTGAGAAGTCCAGGAAAGTTAGTAGACGAAGACCATTACAACCTAGT
CAGTGGGTGGGGTATGCTTTGTCCATGCGATACTCCAGAAGGTGAGGCTGGCTCGATGACTTTCTTTGGTATTGCTCACAACCATTACTTCTTTAATAGCATTTGA
mRNA sequenceShow/hide mRNA sequence
GTTCTTGCTATGTTATCTTTTATTTCTACTATGGGTCATGTGACTAGAGTCTCTCCCCACAGTTTGAGAAGTCCAGGAAAGTTAGTAGACGAAGACCATTACAACCTAGT
CAGTGGGTGGGGTATGCTTTGTCCATGCGATACTCCAGAAGGTGAGGCTGGCTCGATGACTTTCTTTGGTATTGCTCACAACCATTACTTCTTTAATAGCATTTGA
Protein sequenceShow/hide protein sequence
VLAMLSFISTMGHVTRVSPHSLRSPGKLVDEDHYNLVSGWGMLCPCDTPEGEAGSMTFFGIAHNHYFFNSI