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Carg28085 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg28085
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionoligouridylate-binding protein 1B-like
Genome locationCarg_Chr14:9337793..9339598
RNA-Seq ExpressionCarg28085
SyntenyCarg28085
Gene Ontology termsGO:0003729 - mRNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7018225.1 Oligouridylate-binding protein 1B [Cucurbita argyrosperma subsp. argyrosperma]1.1e-43100Show/hide
Query:  CSWGSKPTPPGTASNPLPLPAMASTPGLSATDLLAYERQLALSKMGGVHAALMHPQGHPLKQAPMGIGAAAASQALYDGGFQNISSQQLMYYQ
        CSWGSKPTPPGTASNPLPLPAMASTPGLSATDLLAYERQLALSKMGGVHAALMHPQGHPLKQAPMGIGAAAASQALYDGGFQNISSQQLMYYQ
Subjt:  CSWGSKPTPPGTASNPLPLPAMASTPGLSATDLLAYERQLALSKMGGVHAALMHPQGHPLKQAPMGIGAAAASQALYDGGFQNISSQQLMYYQ

KAG7018229.1 Oligouridylate-binding protein 1C, partial [Cucurbita argyrosperma subsp. argyrosperma]2.9e-44100Show/hide
Query:  MCSWGSKPTPPGTASNPLPLPAMASTPGLSATDLLAYERQLALSKMGGVHAALMHPQGHPLKQAPMGIGAAAASQALYDGGFQNISSQQLMYYQ
        MCSWGSKPTPPGTASNPLPLPAMASTPGLSATDLLAYERQLALSKMGGVHAALMHPQGHPLKQAPMGIGAAAASQALYDGGFQNISSQQLMYYQ
Subjt:  MCSWGSKPTPPGTASNPLPLPAMASTPGLSATDLLAYERQLALSKMGGVHAALMHPQGHPLKQAPMGIGAAAASQALYDGGFQNISSQQLMYYQ

XP_022955788.1 oligouridylate-binding protein 1B-like isoform X2 [Cucurbita moschata]1.1e-43100Show/hide
Query:  CSWGSKPTPPGTASNPLPLPAMASTPGLSATDLLAYERQLALSKMGGVHAALMHPQGHPLKQAPMGIGAAAASQALYDGGFQNISSQQLMYYQ
        CSWGSKPTPPGTASNPLPLPAMASTPGLSATDLLAYERQLALSKMGGVHAALMHPQGHPLKQAPMGIGAAAASQALYDGGFQNISSQQLMYYQ
Subjt:  CSWGSKPTPPGTASNPLPLPAMASTPGLSATDLLAYERQLALSKMGGVHAALMHPQGHPLKQAPMGIGAAAASQALYDGGFQNISSQQLMYYQ

XP_023527002.1 oligouridylate-binding protein 1B-like isoform X1 [Cucurbita pepo subsp. pepo]1.1e-43100Show/hide
Query:  CSWGSKPTPPGTASNPLPLPAMASTPGLSATDLLAYERQLALSKMGGVHAALMHPQGHPLKQAPMGIGAAAASQALYDGGFQNISSQQLMYYQ
        CSWGSKPTPPGTASNPLPLPAMASTPGLSATDLLAYERQLALSKMGGVHAALMHPQGHPLKQAPMGIGAAAASQALYDGGFQNISSQQLMYYQ
Subjt:  CSWGSKPTPPGTASNPLPLPAMASTPGLSATDLLAYERQLALSKMGGVHAALMHPQGHPLKQAPMGIGAAAASQALYDGGFQNISSQQLMYYQ

XP_023527003.1 oligouridylate-binding protein 1B-like isoform X2 [Cucurbita pepo subsp. pepo]1.1e-43100Show/hide
Query:  CSWGSKPTPPGTASNPLPLPAMASTPGLSATDLLAYERQLALSKMGGVHAALMHPQGHPLKQAPMGIGAAAASQALYDGGFQNISSQQLMYYQ
        CSWGSKPTPPGTASNPLPLPAMASTPGLSATDLLAYERQLALSKMGGVHAALMHPQGHPLKQAPMGIGAAAASQALYDGGFQNISSQQLMYYQ
Subjt:  CSWGSKPTPPGTASNPLPLPAMASTPGLSATDLLAYERQLALSKMGGVHAALMHPQGHPLKQAPMGIGAAAASQALYDGGFQNISSQQLMYYQ

TrEMBL top hitse value%identityAlignment
A0A6J1D4M7 oligouridylate-binding protein 1B-like1.6e-4092.55Show/hide
Query:  CSWGSKPTPPGTASNPLPLPAMASTPGLSATDLLAYERQLALSKMGGVHAALMHPQG-HPLKQAPMGIGAAAASQALYDGGFQNISSQQLMYYQ
        CSWG+KPTPPGTASNPLPLPA+ASTPGLSATDLLAYERQLA++KMGGVHAALMHPQG HPLKQAPMGIGAAAASQALYDGGFQNI++QQLMYYQ
Subjt:  CSWGSKPTPPGTASNPLPLPAMASTPGLSATDLLAYERQLALSKMGGVHAALMHPQG-HPLKQAPMGIGAAAASQALYDGGFQNISSQQLMYYQ

A0A6J1GUK1 oligouridylate-binding protein 1B-like isoform X15.4e-44100Show/hide
Query:  CSWGSKPTPPGTASNPLPLPAMASTPGLSATDLLAYERQLALSKMGGVHAALMHPQGHPLKQAPMGIGAAAASQALYDGGFQNISSQQLMYYQ
        CSWGSKPTPPGTASNPLPLPAMASTPGLSATDLLAYERQLALSKMGGVHAALMHPQGHPLKQAPMGIGAAAASQALYDGGFQNISSQQLMYYQ
Subjt:  CSWGSKPTPPGTASNPLPLPAMASTPGLSATDLLAYERQLALSKMGGVHAALMHPQGHPLKQAPMGIGAAAASQALYDGGFQNISSQQLMYYQ

A0A6J1GUZ4 oligouridylate-binding protein 1B-like isoform X25.4e-44100Show/hide
Query:  CSWGSKPTPPGTASNPLPLPAMASTPGLSATDLLAYERQLALSKMGGVHAALMHPQGHPLKQAPMGIGAAAASQALYDGGFQNISSQQLMYYQ
        CSWGSKPTPPGTASNPLPLPAMASTPGLSATDLLAYERQLALSKMGGVHAALMHPQGHPLKQAPMGIGAAAASQALYDGGFQNISSQQLMYYQ
Subjt:  CSWGSKPTPPGTASNPLPLPAMASTPGLSATDLLAYERQLALSKMGGVHAALMHPQGHPLKQAPMGIGAAAASQALYDGGFQNISSQQLMYYQ

A0A6J1IZU2 oligouridylate-binding protein 1B-like isoform X21.2e-4398.92Show/hide
Query:  CSWGSKPTPPGTASNPLPLPAMASTPGLSATDLLAYERQLALSKMGGVHAALMHPQGHPLKQAPMGIGAAAASQALYDGGFQNISSQQLMYYQ
        CSWGSKPTPPGTASNPLPLPAMASTPGLSATDLLAYERQL+LSKMGGVHAALMHPQGHPLKQAPMGIGAAAASQALYDGGFQNISSQQLMYYQ
Subjt:  CSWGSKPTPPGTASNPLPLPAMASTPGLSATDLLAYERQLALSKMGGVHAALMHPQGHPLKQAPMGIGAAAASQALYDGGFQNISSQQLMYYQ

A0A6J1IZV8 oligouridylate-binding protein 1B-like isoform X11.2e-4398.92Show/hide
Query:  CSWGSKPTPPGTASNPLPLPAMASTPGLSATDLLAYERQLALSKMGGVHAALMHPQGHPLKQAPMGIGAAAASQALYDGGFQNISSQQLMYYQ
        CSWGSKPTPPGTASNPLPLPAMASTPGLSATDLLAYERQL+LSKMGGVHAALMHPQGHPLKQAPMGIGAAAASQALYDGGFQNISSQQLMYYQ
Subjt:  CSWGSKPTPPGTASNPLPLPAMASTPGLSATDLLAYERQLALSKMGGVHAALMHPQGHPLKQAPMGIGAAAASQALYDGGFQNISSQQLMYYQ

SwissProt top hitse value%identityAlignment
Q6YZW2 RNA-binding protein 2084.7e-1350Show/hide
Query:  CSWGSKPTPPGTASNPLPLP-------AMASTP-GLSATDLLAYERQLALSKMGGVHAALMHPQGHPLKQAPMGIGAAAASQALYDGGFQNISSQQLMYY
        CSWG+KPTPPGT+S PLP P        MA  P G SA D++AY+RQL LS++     A  H       Q   G+  AA SQALYDG     S+QQLMYY
Subjt:  CSWGSKPTPPGTASNPLPLP-------AMASTP-GLSATDLLAYERQLALSKMGGVHAALMHPQGHPLKQAPMGIGAAAASQALYDGGFQNISSQQLMYY

Q9LJH8 Oligouridylate-binding protein 1C8.9e-2873.68Show/hide
Query:  CSWGSKPTPPGTASNPLPLPAMASTPGLSATDLLAYERQLALSKMGGVHAALMHPQG-HPLKQAPMGIGAAAASQALYDGGFQNI-SSQQLMYYQ
        CSWG+KPTPPGTASNPLP PA A  PGLSA DLL YERQLALSKM  V+ ALMH QG HPL+QA  GI AA A+ A+YDGGFQN+ ++QQLMYYQ
Subjt:  CSWGSKPTPPGTASNPLPLPAMASTPGLSATDLLAYERQLALSKMGGVHAALMHPQG-HPLKQAPMGIGAAAASQALYDGGFQNI-SSQQLMYYQ

Q9LQI9 Oligouridylate-binding protein 1B3.7e-2668.09Show/hide
Query:  CSWGSKPTPPGTASNPLPLPAMASTPGLSATDLLAYERQLALSKMGGVHAALMHPQG-HPLKQAPMGIGAAAASQALYDGGFQNISSQQLMYYQ
        CSWGSKPTP GTASNPLP PA A  PG SA+DLLAYERQLA+SKM G++  + HPQG H  KQA M  GA  ++QA+YDGG+QN  +QQLMYYQ
Subjt:  CSWGSKPTPPGTASNPLPLPAMASTPGLSATDLLAYERQLALSKMGGVHAALMHPQG-HPLKQAPMGIGAAAASQALYDGGFQNISSQQLMYYQ

Q9M427 Oligouridylate-binding protein 11.1e-1754.35Show/hide
Query:  CSWGSKPTPPGTASNPLPLPAMASTPGLSATDLLAYERQLALSKMGGVHAALMHPQGHPLKQAPMGIGAAAASQALYDGGFQNISSQQLMYY
        CSWGSKPTPPG++SNPLP PA+   PGLSA DL AY+RQLAL+KM G   A M PQG  +          A  Q +YDGG+  I+S Q   Y
Subjt:  CSWGSKPTPPGTASNPLPLPAMASTPGLSATDLLAYERQLALSKMGGVHAALMHPQGHPLKQAPMGIGAAAASQALYDGGFQNISSQQLMYY

Q9SYG4 Oligouridylate-binding protein 1A1.3e-2362.5Show/hide
Query:  CSWGSKPTPPGTASNPLPLPAMASTPGLSATDLLAYERQLALSKMGGVHAALMHPQG-HPLKQAPMGIGAAAASQALYDGGFQNISS--QQLMYYQ
        CSWG+KPTP GTASNPLP PA AS P LSA DLLAYERQLAL+K        MHPQ  H L+QA +G+  A  + A+YDGG+QN+++  QQLMYYQ
Subjt:  CSWGSKPTPPGTASNPLPLPAMASTPGLSATDLLAYERQLALSKMGGVHAALMHPQG-HPLKQAPMGIGAAAASQALYDGGFQNISS--QQLMYYQ

Arabidopsis top hitse value%identityAlignment
AT1G17370.1 oligouridylate binding protein 1B2.7e-2768.09Show/hide
Query:  CSWGSKPTPPGTASNPLPLPAMASTPGLSATDLLAYERQLALSKMGGVHAALMHPQG-HPLKQAPMGIGAAAASQALYDGGFQNISSQQLMYYQ
        CSWGSKPTP GTASNPLP PA A  PG SA+DLLAYERQLA+SKM G++  + HPQG H  KQA M  GA  ++QA+YDGG+QN  +QQLMYYQ
Subjt:  CSWGSKPTPPGTASNPLPLPAMASTPGLSATDLLAYERQLALSKMGGVHAALMHPQG-HPLKQAPMGIGAAAASQALYDGGFQNISSQQLMYYQ

AT1G17370.2 oligouridylate binding protein 1B2.7e-2768.09Show/hide
Query:  CSWGSKPTPPGTASNPLPLPAMASTPGLSATDLLAYERQLALSKMGGVHAALMHPQG-HPLKQAPMGIGAAAASQALYDGGFQNISSQQLMYYQ
        CSWGSKPTP GTASNPLP PA A  PG SA+DLLAYERQLA+SKM G++  + HPQG H  KQA M  GA  ++QA+YDGG+QN  +QQLMYYQ
Subjt:  CSWGSKPTPPGTASNPLPLPAMASTPGLSATDLLAYERQLALSKMGGVHAALMHPQG-HPLKQAPMGIGAAAASQALYDGGFQNISSQQLMYYQ

AT1G54080.1 oligouridylate-binding protein 1A9.4e-2562.5Show/hide
Query:  CSWGSKPTPPGTASNPLPLPAMASTPGLSATDLLAYERQLALSKMGGVHAALMHPQG-HPLKQAPMGIGAAAASQALYDGGFQNISS--QQLMYYQ
        CSWG+KPTP GTASNPLP PA AS P LSA DLLAYERQLAL+K        MHPQ  H L+QA +G+  A  + A+YDGG+QN+++  QQLMYYQ
Subjt:  CSWGSKPTPPGTASNPLPLPAMASTPGLSATDLLAYERQLALSKMGGVHAALMHPQG-HPLKQAPMGIGAAAASQALYDGGFQNISS--QQLMYYQ

AT1G54080.2 oligouridylate-binding protein 1A9.4e-2562.5Show/hide
Query:  CSWGSKPTPPGTASNPLPLPAMASTPGLSATDLLAYERQLALSKMGGVHAALMHPQG-HPLKQAPMGIGAAAASQALYDGGFQNISS--QQLMYYQ
        CSWG+KPTP GTASNPLP PA AS P LSA DLLAYERQLAL+K        MHPQ  H L+QA +G+  A  + A+YDGG+QN+++  QQLMYYQ
Subjt:  CSWGSKPTPPGTASNPLPLPAMASTPGLSATDLLAYERQLALSKMGGVHAALMHPQG-HPLKQAPMGIGAAAASQALYDGGFQNISS--QQLMYYQ

AT3G14100.1 RNA-binding (RRM/RBD/RNP motifs) family protein6.3e-2973.68Show/hide
Query:  CSWGSKPTPPGTASNPLPLPAMASTPGLSATDLLAYERQLALSKMGGVHAALMHPQG-HPLKQAPMGIGAAAASQALYDGGFQNI-SSQQLMYYQ
        CSWG+KPTPPGTASNPLP PA A  PGLSA DLL YERQLALSKM  V+ ALMH QG HPL+QA  GI AA A+ A+YDGGFQN+ ++QQLMYYQ
Subjt:  CSWGSKPTPPGTASNPLPLPAMASTPGLSATDLLAYERQLALSKMGGVHAALMHPQG-HPLKQAPMGIGAAAASQALYDGGFQNI-SSQQLMYYQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGCTCTTGGGGTAGCAAACCCACACCACCCGGAACAGCATCCAATCCACTTCCACTACCGGCAATGGCTTCCACTCCTGGCCTTTCAGCAACTGACCTATTGGCTTA
TGAGCGGCAACTAGCACTAAGCAAGATGGGTGGTGTCCATGCAGCACTTATGCACCCTCAGGGTCATCCTCTGAAGCAAGCACCGATGGGAATTGGAGCAGCTGCAGCTA
GCCAAGCATTATATGATGGTGGCTTCCAGAACATTTCATCCCAGCAACTTATGTACTACCAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTGCTCTTGGGGTAGCAAACCCACACCACCCGGAACAGCATCCAATCCACTTCCACTACCGGCAATGGCTTCCACTCCTGGCCTTTCAGCAACTGACCTATTGGCTTA
TGAGCGGCAACTAGCACTAAGCAAGATGGGTGGTGTCCATGCAGCACTTATGCACCCTCAGGGTCATCCTCTGAAGCAAGCACCGATGGGAATTGGAGCAGCTGCAGCTA
GCCAAGCATTATATGATGGTGGCTTCCAGAACATTTCATCCCAGCAACTTATGTACTACCAGTAGTAAATATGGCTTAGCTTTTGCTTTTGCTTTTGTTTGATGAAGTCT
ATTTATATTCACTGGCTTTTCCTGAGATTATGAGCCTTCAGTTCGCCCTCTATATCCGACTTTTTCCTTCTTTTGGTGATCAGATTCTTTTACACCTACAGATGGAAAGT
ATGTTTGTTACACCTTTTTTTAATGTTATAAGTGCCAGTGGCAGCGGCTATGGGCATTAGAGGAAGCCTGTTTACCAATCATAAAGC
Protein sequenceShow/hide protein sequence
MCSWGSKPTPPGTASNPLPLPAMASTPGLSATDLLAYERQLALSKMGGVHAALMHPQGHPLKQAPMGIGAAAASQALYDGGFQNISSQQLMYYQ