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Carg28090 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg28090
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionGlyceraldehyde-3-phosphate dehydrogenase, cytosolic
Genome locationCarg_Chr15:597282..598752
RNA-Seq ExpressionCarg28090
SyntenyCarg28090
Gene Ontology termsGO:0005975 - carbohydrate metabolic process (biological process)
GO:0044281 - small molecule metabolic process (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0000166 - nucleotide binding (molecular function)
GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor (molecular function)
InterPro domainsIPR020831 - Glyceraldehyde/Erythrose phosphate dehydrogenase family
IPR036291 - NAD(P)-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6578391.1 Protoporphyrinogen oxidase 2, partial [Cucurbita argyrosperma subsp. sororia]7.5e-1757.28Show/hide
Query:  MHDSNLLSHGTL-----KLLEESASSIHYLSSNFSVKTYMFKYDGVHGQWKHHDIKVKDGKTLLFGEKQSPFLVLGTRRRSHGRGLE--LSMCVESTGVF
        MHDSNLLSHG+L      +   S    + L ++   +TYMFKYDGVHGQWKHHDIKVKDGKTLLFGEK     V GTR        E      VESTGVF
Subjt:  MHDSNLLSHGTL-----KLLEESASSIHYLSSNFSVKTYMFKYDGVHGQWKHHDIKVKDGKTLLFGEKQSPFLVLGTRRRSHGRGLE--LSMCVESTGVF

Query:  TDK
        TDK
Subjt:  TDK

KAG6578399.1 Protoporphyrinogen oxidase 2, partial [Cucurbita argyrosperma subsp. sororia]7.5e-1757.28Show/hide
Query:  MHDSNLLSHGTL-----KLLEESASSIHYLSSNFSVKTYMFKYDGVHGQWKHHDIKVKDGKTLLFGEKQSPFLVLGTRRRSHGRGLE--LSMCVESTGVF
        MHDSNLLSHG+L      +   S    + L ++   +TYMFKYDGVHGQWKHHDIKVKDGKTLLFGEK     V GTR        E      VESTGVF
Subjt:  MHDSNLLSHGTL-----KLLEESASSIHYLSSNFSVKTYMFKYDGVHGQWKHHDIKVKDGKTLLFGEKQSPFLVLGTRRRSHGRGLE--LSMCVESTGVF

Query:  TDK
        TDK
Subjt:  TDK

KAG7015969.1 Glyceraldehyde-3-phosphate dehydrogenase, cytosolic, partial [Cucurbita argyrosperma subsp. argyrosperma]1.1e-52100Show/hide
Query:  MHDSNLLSHGTLKLLEESASSIHYLSSNFSVKTYMFKYDGVHGQWKHHDIKVKDGKTLLFGEKQSPFLVLGTRRRSHGRGLELSMCVESTGVFTDKGQRL
        MHDSNLLSHGTLKLLEESASSIHYLSSNFSVKTYMFKYDGVHGQWKHHDIKVKDGKTLLFGEKQSPFLVLGTRRRSHGRGLELSMCVESTGVFTDKGQRL
Subjt:  MHDSNLLSHGTLKLLEESASSIHYLSSNFSVKTYMFKYDGVHGQWKHHDIKVKDGKTLLFGEKQSPFLVLGTRRRSHGRGLELSMCVESTGVFTDKGQRL

Query:  LLIW
        LLIW
Subjt:  LLIW

KAG7015971.1 Glyceraldehyde-3-phosphate dehydrogenase, cytosolic, partial [Cucurbita argyrosperma subsp. argyrosperma]1.0e-1363.51Show/hide
Query:  LSSNFSVKTYMFKYDGVHGQWKHHDIKVKDGKTLLFGEKQSPFLVLGTRRRSHGRGLE--LSMCVESTGVFTDK
        L ++   +TYMFKYDGVHGQWKHHDIKVKDGKTLLFGEK     V GTR        E      VESTGVFTDK
Subjt:  LSSNFSVKTYMFKYDGVHGQWKHHDIKVKDGKTLLFGEKQSPFLVLGTRRRSHGRGLE--LSMCVESTGVFTDK

XP_023551048.1 glyceraldehyde-3-phosphate dehydrogenase, cytosolic-like isoform X4 [Cucurbita pepo subsp. pepo]1.7e-1368.66Show/hide
Query:  KTYMFKYDGVHGQWKHHDIKVKDGKTLLFGEKQSPFLVLGTRRRSHGRGLE--LSMCVESTGVFTDK
        +TYMFKYDGVHGQWKHHDIKVKDGKTLLFGEK     V GTR        E      VESTGVFTDK
Subjt:  KTYMFKYDGVHGQWKHHDIKVKDGKTLLFGEKQSPFLVLGTRRRSHGRGLE--LSMCVESTGVFTDK

TrEMBL top hitse value%identityAlignment
A0A1U8HRN9 glyceraldehyde-3-phosphate dehydrogenase, cytosolic-like isoform X29.3e-1365.15Show/hide
Query:  TYMFKYDGVHGQWKHHDIKVKDGKTLLFGEKQSPFLVLGTRRRSHGRGLE--LSMCVESTGVFTDK
        TYMFKYD VHGQWKHHD+KVKD KTLLFGEK  P  V G R        E      VESTGVFTDK
Subjt:  TYMFKYDGVHGQWKHHDIKVKDGKTLLFGEKQSPFLVLGTRRRSHGRGLE--LSMCVESTGVFTDK

A0A5D2RAB8 Glyceraldehyde-3-phosphate dehydrogenase9.3e-1365.15Show/hide
Query:  TYMFKYDGVHGQWKHHDIKVKDGKTLLFGEKQSPFLVLGTRRRSHGRGLE--LSMCVESTGVFTDK
        TYMFKYD VHGQWKHHD+KVKD KTLLFGEK  P  V G R        E      VESTGVFTDK
Subjt:  TYMFKYDGVHGQWKHHDIKVKDGKTLLFGEKQSPFLVLGTRRRSHGRGLE--LSMCVESTGVFTDK

A0A5D2RAQ4 Gp_dh_N domain-containing protein9.3e-1365.15Show/hide
Query:  TYMFKYDGVHGQWKHHDIKVKDGKTLLFGEKQSPFLVLGTRRRSHGRGLE--LSMCVESTGVFTDK
        TYMFKYD VHGQWKHHD+KVKD KTLLFGEK  P  V G R        E      VESTGVFTDK
Subjt:  TYMFKYDGVHGQWKHHDIKVKDGKTLLFGEKQSPFLVLGTRRRSHGRGLE--LSMCVESTGVFTDK

A0A5J5BIS2 Glyceraldehyde-3-phosphate dehydrogenase7.1e-1365.15Show/hide
Query:  TYMFKYDGVHGQWKHHDIKVKDGKTLLFGEKQSPFLVLGTRRRSHGRGLE--LSMCVESTGVFTDK
        TYMFKYD VHGQWKHHD+KVKD KTLLFGEK  P  V G R        E      VESTGVFTDK
Subjt:  TYMFKYDGVHGQWKHHDIKVKDGKTLLFGEKQSPFLVLGTRRRSHGRGLE--LSMCVESTGVFTDK

A0A7J8R2K7 Gp_dh_N domain-containing protein4.2e-1365.15Show/hide
Query:  MFKYDGVHGQWKHHDIKVKDGKTLLFGEKQSPFLVLGTR--RRSHGRGLELSMCVESTGVFTDKGQ
        MFKYDGVHGQWKHHD+KVKD KTLLFGEK  P +  G R  +       E    VESTGVFTDKGQ
Subjt:  MFKYDGVHGQWKHHDIKVKDGKTLLFGEKQSPFLVLGTR--RRSHGRGLELSMCVESTGVFTDKGQ

SwissProt top hitse value%identityAlignment
P08477 Glyceraldehyde-3-phosphate dehydrogenase 2, cytosolic (Fragment)8.1e-1461.76Show/hide
Query:  TYMFKYDGVHGQWKHHDIKVKDGKTLLFGEKQSPFLVLGTRRRSH----GRGLELSMCVESTGVFTDK
        TYMFKYD VHGQWKHH++KVKD KTLLFGEK+    V G R          G E    VESTGVFTDK
Subjt:  TYMFKYDGVHGQWKHHDIKVKDGKTLLFGEKQSPFLVLGTRRRSH----GRGLELSMCVESTGVFTDK

P25861 Glyceraldehyde-3-phosphate dehydrogenase, cytosolic6.2e-1461.43Show/hide
Query:  TYMFKYDGVHGQWKHHDIKVKDGKTLLFGEKQSPFLVLGTR------RRSHGRGLELSMCVESTGVFTDK
        TYMFKYD VHG WKHH++KVKD KTLLFGEK  P +V G R      R S G        VESTGVFTDK
Subjt:  TYMFKYDGVHGQWKHHDIKVKDGKTLLFGEKQSPFLVLGTR------RRSHGRGLELSMCVESTGVFTDK

P26518 Glyceraldehyde-3-phosphate dehydrogenase, cytosolic1.2e-1463.64Show/hide
Query:  TYMFKYDGVHGQWKHHDIKVKDGKTLLFGEKQSPFLVLGTRRRSHGRGLE--LSMCVESTGVFTDK
        TYMFKYD VHGQWKHH++KVKD KTLLFGEK  P  V G R        E      VESTGVFTDK
Subjt:  TYMFKYDGVHGQWKHHDIKVKDGKTLLFGEKQSPFLVLGTRRRSHGRGLE--LSMCVESTGVFTDK

P34921 Glyceraldehyde-3-phosphate dehydrogenase, cytosolic9.5e-1565.15Show/hide
Query:  TYMFKYDGVHGQWKHHDIKVKDGKTLLFGEKQSPFLVLGTRRRSH--GRGLELSMCVESTGVFTDK
        TYMFKYD VHGQWKHHDIKVKD KTLLFGEK     V G R        G      VESTGVFTDK
Subjt:  TYMFKYDGVHGQWKHHDIKVKDGKTLLFGEKQSPFLVLGTRRRSH--GRGLELSMCVESTGVFTDK

Q9FX54 Glyceraldehyde-3-phosphate dehydrogenase GAPC2, cytosolic2.8e-1463.64Show/hide
Query:  TYMFKYDGVHGQWKHHDIKVKDGKTLLFGEKQSPFLVLGTRRRSHGRGLE--LSMCVESTGVFTDK
        TYMFKYD VHGQWKHH++KVKD KTLLFGEK  P  V G R        E      VESTGVFTDK
Subjt:  TYMFKYDGVHGQWKHHDIKVKDGKTLLFGEKQSPFLVLGTRRRSHGRGLE--LSMCVESTGVFTDK

Arabidopsis top hitse value%identityAlignment
AT1G13440.1 glyceraldehyde-3-phosphate dehydrogenase C22.0e-1563.64Show/hide
Query:  TYMFKYDGVHGQWKHHDIKVKDGKTLLFGEKQSPFLVLGTRRRSHGRGLE--LSMCVESTGVFTDK
        TYMFKYD VHGQWKHH++KVKD KTLLFGEK  P  V G R        E      VESTGVFTDK
Subjt:  TYMFKYDGVHGQWKHHDIKVKDGKTLLFGEKQSPFLVLGTRRRSHGRGLE--LSMCVESTGVFTDK

AT1G13440.2 glyceraldehyde-3-phosphate dehydrogenase C22.0e-1563.64Show/hide
Query:  TYMFKYDGVHGQWKHHDIKVKDGKTLLFGEKQSPFLVLGTRRRSHGRGLE--LSMCVESTGVFTDK
        TYMFKYD VHGQWKHH++KVKD KTLLFGEK  P  V G R        E      VESTGVFTDK
Subjt:  TYMFKYDGVHGQWKHHDIKVKDGKTLLFGEKQSPFLVLGTRRRSHGRGLE--LSMCVESTGVFTDK

AT3G04120.1 glyceraldehyde-3-phosphate dehydrogenase C subunit 11.3e-1460.61Show/hide
Query:  TYMFKYDGVHGQWKHHDIKVKDGKTLLFGEKQSPFLVLGTRRRSHGRGLE--LSMCVESTGVFTDK
        TYMFKYD VHGQWKH+++K+KD KTLLFGEK  P  V G R        E      VESTGVFTDK
Subjt:  TYMFKYDGVHGQWKHHDIKVKDGKTLLFGEKQSPFLVLGTRRRSHGRGLE--LSMCVESTGVFTDK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATGATTCGAATTTACTTTCCCACGGGACTCTCAAACTGTTGGAAGAATCAGCTTCCAGCATCCATTATCTGTCAAGTAATTTTTCTGTCAAAACCTACATGTTCAA
ATACGATGGTGTACACGGCCAGTGGAAGCACCACGATATTAAGGTTAAGGACGGCAAGACTCTTCTCTTTGGAGAAAAGCAGTCGCCGTTTTTGGTACTAGGAACCCGGA
GGAGATCCCATGGGAGAGGCCTGGAGCTGAGTATGTGTGTTGAATCCACTGGAGTTTTCACTGATAAGGGACAAAGGCTGCTGCTCATTTGG
mRNA sequenceShow/hide mRNA sequence
ATGCATGATTCGAATTTACTTTCCCACGGGACTCTCAAACTGTTGGAAGAATCAGCTTCCAGCATCCATTATCTGTCAAGTAATTTTTCTGTCAAAACCTACATGTTCAA
ATACGATGGTGTACACGGCCAGTGGAAGCACCACGATATTAAGGTTAAGGACGGCAAGACTCTTCTCTTTGGAGAAAAGCAGTCGCCGTTTTTGGTACTAGGAACCCGGA
GGAGATCCCATGGGAGAGGCCTGGAGCTGAGTATGTGTGTTGAATCCACTGGAGTTTTCACTGATAAGGGACAAAGGCTGCTGCTCATTTGG
Protein sequenceShow/hide protein sequence
MHDSNLLSHGTLKLLEESASSIHYLSSNFSVKTYMFKYDGVHGQWKHHDIKVKDGKTLLFGEKQSPFLVLGTRRRSHGRGLELSMCVESTGVFTDKGQRLLLIW