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Carg28104 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg28104
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionTNFR/CD27/30/40/95 cysteine-rich region
Genome locationCarg_Chr18:6149565..6150669
RNA-Seq ExpressionCarg28104
SyntenyCarg28104
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6573550.1 hypothetical protein SDJN03_27437, partial [Cucurbita argyrosperma subsp. sororia]3.7e-4695.7Show/hide
Query:  NTITAAVILMTAICLTSPCPTDAKLCGDCIRDRMALHCPACAPPLRCMAQCLWGGGSRSRCVKQCDGGGAWARLWSCKRCMWSCKCSCTSSSS
        + ITAAVILMTAICLTSPCP DAKLCGDCIRDRMALHCPACAPPLRCMAQCLWGGGSRSRCVKQCD GGAWARLWSCKRCMWSCKCSCTSSSS
Subjt:  NTITAAVILMTAICLTSPCPTDAKLCGDCIRDRMALHCPACAPPLRCMAQCLWGGGSRSRCVKQCDGGGAWARLWSCKRCMWSCKCSCTSSSS

KAG6573554.1 hypothetical protein SDJN03_27441, partial [Cucurbita argyrosperma subsp. sororia]9.0e-4593.55Show/hide
Query:  NTITAAVILMTAICLTSPCPTDAKLCGDCIRDRMALHCPACAPPLRCMAQCLWGGGSRSRCVKQCDGGGAWARLWSCKRCMWSCKCSCTSSSS
        + ITA VILMT ICLTSPC  DAKLCGDCIRDRMALHCPACAPPLRCMAQCLWGGGSRSRCVKQCDGGGAWARLWSCKRCMWSCKCSCTSSSS
Subjt:  NTITAAVILMTAICLTSPCPTDAKLCGDCIRDRMALHCPACAPPLRCMAQCLWGGGSRSRCVKQCDGGGAWARLWSCKRCMWSCKCSCTSSSS

KAG7012656.1 hypothetical protein SDJN02_25409, partial [Cucurbita argyrosperma subsp. argyrosperma]2.8e-78100Show/hide
Query:  MEDNKSTSGYVFMMSGEVVAWSSRKQPIVTLSTIKVEFVAANACACQADEENTITAAVILMTAICLTSPCPTDAKLCGDCIRDRMALHCPACAPPLRCMA
        MEDNKSTSGYVFMMSGEVVAWSSRKQPIVTLSTIKVEFVAANACACQADEENTITAAVILMTAICLTSPCPTDAKLCGDCIRDRMALHCPACAPPLRCMA
Subjt:  MEDNKSTSGYVFMMSGEVVAWSSRKQPIVTLSTIKVEFVAANACACQADEENTITAAVILMTAICLTSPCPTDAKLCGDCIRDRMALHCPACAPPLRCMA

Query:  QCLWGGGSRSRCVKQCDGGGAWARLWSCKRCMWSCKCSCTSSSS
        QCLWGGGSRSRCVKQCDGGGAWARLWSCKRCMWSCKCSCTSSSS
Subjt:  QCLWGGGSRSRCVKQCDGGGAWARLWSCKRCMWSCKCSCTSSSS

XP_019265114.1 PREDICTED: uncharacterized protein LOC109242719 [Nicotiana attenuata]1.4e-1648.39Show/hide
Query:  TITAAVILMTAIC-LTSP---CPTDAKLCGDCIRDRMALHCPACAPPLRCMAQCLWGGGSRSRCVKQCDGGGAWARLWSCKRCMWSCKCSCTS
        T+   ++++  +C +TSP   CPTD   C +CI + M + CP CAP +RCMA+CLWGG SR++C K+CD  G + RL  CK C+  CKCSC+S
Subjt:  TITAAVILMTAIC-LTSP---CPTDAKLCGDCIRDRMALHCPACAPPLRCMAQCLWGGGSRSRCVKQCDGGGAWARLWSCKRCMWSCKCSCTS

XP_021632296.1 uncharacterized protein LOC110629573 [Manihot esculenta]3.0e-1654.02Show/hide
Query:  VILMTAICLTSPCP---TDAKLCGDCIRDRMALHCPACAPPLRCMAQCLWGGGSRSRCVKQCDGGGAWARLWSCKRCMWSCKCSCTS
        ++ +  I  T  CP   T    C +CI D+M   CP+CAP LRCMA+CLWGGGSRS+CVK+CD  GA  RL  CK+CM  CKCSC +
Subjt:  VILMTAICLTSPCP---TDAKLCGDCIRDRMALHCPACAPPLRCMAQCLWGGGSRSRCVKQCDGGGAWARLWSCKRCMWSCKCSCTS

TrEMBL top hitse value%identityAlignment
A0A0A0LW71 Uncharacterized protein7.5e-2970Show/hide
Query:  ITAAVILMTAICLTSPCPTDAKLCGDCIRDRMALHCPACAPPLRCMAQCLWGGGSRSRCVKQCDGGGAWARLWSCKRCMWSCKCSCTSSS
        IT  VILMTA+ LT  CP + K+C DCIR+RM   CPACAPPLRCMAQCLWGG SRSRCV +CD GGAWA L SCK+C+  CKC C+SSS
Subjt:  ITAAVILMTAICLTSPCPTDAKLCGDCIRDRMALHCPACAPPLRCMAQCLWGGGSRSRCVKQCDGGGAWARLWSCKRCMWSCKCSCTSSS

A0A2C9URU5 Uncharacterized protein1.5e-1654.02Show/hide
Query:  VILMTAICLTSPCP---TDAKLCGDCIRDRMALHCPACAPPLRCMAQCLWGGGSRSRCVKQCDGGGAWARLWSCKRCMWSCKCSCTS
        ++ +  I  T  CP   T    C +CI D+M   CP+CAP LRCMA+CLWGGGSRS+CVK+CD  GA  RL  CK+CM  CKCSC +
Subjt:  VILMTAICLTSPCP---TDAKLCGDCIRDRMALHCPACAPPLRCMAQCLWGGGSRSRCVKQCDGGGAWARLWSCKRCMWSCKCSCTS

A0A438FE46 Uncharacterized protein3.3e-1647.96Show/hide
Query:  QADEENTITAAVILMTAI--CLTSP---CPTDAKLCGDCIRDRMALHCPACAPPLRCMAQCLWGGGSRSRCVKQCDGGGAWARLWSCKRCMWSCKCSC
        + +++ +  AAV+++  +   + SP   CP+D   C DCI ++M   CP+CAP LRCMA+CLWGG S+S+CVK+CD  G   RL  CK+CM  CKCSC
Subjt:  QADEENTITAAVILMTAI--CLTSP---CPTDAKLCGDCIRDRMALHCPACAPPLRCMAQCLWGGGSRSRCVKQCDGGGAWARLWSCKRCMWSCKCSC

A0A438JGC2 Uncharacterized protein5.6e-1652.17Show/hide
Query:  NTITAAVILMTAICLT-SP---CPTDAKLCGDCIRDRMALHCPACAPPLRCMAQCLWGGGSRSRCVKQCDGGGAWARLWSCKRCMWSCKCSC
        +T+ A ++L     LT SP   CP+D   C DCI ++M   CP+CAP L CMA+CLWGG S+S+CVK+CD  G   RL  CK+CM  CKCSC
Subjt:  NTITAAVILMTAICLT-SP---CPTDAKLCGDCIRDRMALHCPACAPPLRCMAQCLWGGGSRSRCVKQCDGGGAWARLWSCKRCMWSCKCSC

A0A6P3ZGK3 uncharacterized protein LOC1074149525.6e-1648.31Show/hide
Query:  ITAAVILMTAICLTSP---CPTDAKLCGDCIRDRMALHCPACAPPLRCMAQCLWGGGSRSRCVKQCDGGGAWARLWSCKRCMWSCKCSC
        +   ++L+  + + SP   CP+D + C  CI ++M   CPACAP LRCMA+CLW G SR  C+K+CD GG   +L  CK+CM  CKCSC
Subjt:  ITAAVILMTAICLTSP---CPTDAKLCGDCIRDRMALHCPACAPPLRCMAQCLWGGGSRSRCVKQCDGGGAWARLWSCKRCMWSCKCSC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G12064.1 unknown protein1.8e-1143.06Show/hide
Query:  PTDAKLCGDCIRDRMALHCPACAPPLRCMAQCLWGGGSRSRCVKQCD-GGGAWARLWSCKRCMWSCKCSCTS
        P     C  C+ ++M   CP C P LRCMA+CLWGG ++ +C   C     A   L  CKRC+  CKCSC +
Subjt:  PTDAKLCGDCIRDRMALHCPACAPPLRCMAQCLWGGGSRSRCVKQCD-GGGAWARLWSCKRCMWSCKCSCTS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGATAACAAGAGTACTTCAGGCTATGTGTTTATGATGAGTGGAGAAGTAGTAGCTTGGTCTTCTCGTAAGCAGCCTATAGTCACCTTATCAACCATAAAAGTTGA
GTTTGTTGCTGCTAATGCCTGTGCATGTCAAGCGGATGAGGAGAATACAATCACCGCAGCGGTGATTCTTATGACGGCCATCTGCCTGACTTCCCCTTGCCCGACCGACG
CCAAGCTGTGCGGGGACTGCATCAGGGACAGGATGGCGCTGCACTGCCCAGCCTGCGCACCGCCTCTTCGCTGCATGGCGCAGTGCCTGTGGGGCGGCGGTTCAAGGTCG
AGGTGCGTTAAGCAGTGCGATGGCGGCGGTGCATGGGCGAGGCTGTGGAGTTGCAAGCGTTGCATGTGGAGTTGCAAGTGCAGTTGTACCTCTTCTTCTTCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAAGATAACAAGAGTACTTCAGGCTATGTGTTTATGATGAGTGGAGAAGTAGTAGCTTGGTCTTCTCGTAAGCAGCCTATAGTCACCTTATCAACCATAAAAGTTGA
GTTTGTTGCTGCTAATGCCTGTGCATGTCAAGCGGATGAGGAGAATACAATCACCGCAGCGGTGATTCTTATGACGGCCATCTGCCTGACTTCCCCTTGCCCGACCGACG
CCAAGCTGTGCGGGGACTGCATCAGGGACAGGATGGCGCTGCACTGCCCAGCCTGCGCACCGCCTCTTCGCTGCATGGCGCAGTGCCTGTGGGGCGGCGGTTCAAGGTCG
AGGTGCGTTAAGCAGTGCGATGGCGGCGGTGCATGGGCGAGGCTGTGGAGTTGCAAGCGTTGCATGTGGAGTTGCAAGTGCAGTTGTACCTCTTCTTCTTCTTAG
Protein sequenceShow/hide protein sequence
MEDNKSTSGYVFMMSGEVVAWSSRKQPIVTLSTIKVEFVAANACACQADEENTITAAVILMTAICLTSPCPTDAKLCGDCIRDRMALHCPACAPPLRCMAQCLWGGGSRS
RCVKQCDGGGAWARLWSCKRCMWSCKCSCTSSSS