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Carg28107 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg28107
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionGlycine-rich protein family
Genome locationCarg_Chr11:7664367..7666437
RNA-Seq ExpressionCarg28107
SyntenyCarg28107
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7022391.1 hypothetical protein SDJN02_16122, partial [Cucurbita argyrosperma subsp. argyrosperma]2.9e-95100Show/hide
Query:  MASPLPILLLLALYCSSVCGEELEGQGVTQAFQCFDNNLIYYGCESAYRLNPTGNLNVPLEATNLFCNGPCLIETQLLLNCLDHAFHNFLFYNKATVPDI
        MASPLPILLLLALYCSSVCGEELEGQGVTQAFQCFDNNLIYYGCESAYRLNPTGNLNVPLEATNLFCNGPCLIETQLLLNCLDHAFHNFLFYNKATVPDI
Subjt:  MASPLPILLLLALYCSSVCGEELEGQGVTQAFQCFDNNLIYYGCESAYRLNPTGNLNVPLEATNLFCNGPCLIETQLLLNCLDHAFHNFLFYNKATVPDI

Query:  QNALRAGCSYSTQRGNFNPGYFMQGEISKGHTLQKWTLSTHVSMDPPVVSNTSWNLCLVRQAFSDSC
        QNALRAGCSYSTQRGNFNPGYFMQGEISKGHTLQKWTLSTHVSMDPPVVSNTSWNLCLVRQAFSDSC
Subjt:  QNALRAGCSYSTQRGNFNPGYFMQGEISKGHTLQKWTLSTHVSMDPPVVSNTSWNLCLVRQAFSDSC

XP_008450550.1 PREDICTED: uncharacterized protein LOC103492117 [Cucumis melo]3.1e-4967.61Show/hide
Query:  MASPLPIL-----LLLALYCSSVCG-EELEGQGVTQAFQCFDNNLIYYGCESAYRLNPTGNLNVPLEATNLFCNGPCLIETQLLLNCLDHAFHNFLFYNK
        MASP+  L     L+++L C SV G +E+ GQ V ++F+CFDN  IY GCESAYRLNP+G+ NVP EATNLFCNGPCLIETQLLLNCLD++FHNFLFYNK
Subjt:  MASPLPIL-----LLLALYCSSVCG-EELEGQGVTQAFQCFDNNLIYYGCESAYRLNPTGNLNVPLEATNLFCNGPCLIETQLLLNCLDHAFHNFLFYNK

Query:  ATVPDIQNALRAGCSYSTQRGNFNPGYFMQGEISKGHTLQKW
        AT   ++NALR GCS+S+QRGNFN G FMQGE+SK HT Q+W
Subjt:  ATVPDIQNALRAGCSYSTQRGNFNPGYFMQGEISKGHTLQKW

XP_022931673.1 uncharacterized protein LOC111437811 [Cucurbita moschata]1.1e-75100Show/hide
Query:  MASPLPILLLLALYCSSVCGEELEGQGVTQAFQCFDNNLIYYGCESAYRLNPTGNLNVPLEATNLFCNGPCLIETQLLLNCLDHAFHNFLFYNKATVPDI
        MASPLPILLLLALYCSSVCGEELEGQGVTQAFQCFDNNLIYYGCESAYRLNPTGNLNVPLEATNLFCNGPCLIETQLLLNCLDHAFHNFLFYNKATVPDI
Subjt:  MASPLPILLLLALYCSSVCGEELEGQGVTQAFQCFDNNLIYYGCESAYRLNPTGNLNVPLEATNLFCNGPCLIETQLLLNCLDHAFHNFLFYNKATVPDI

Query:  QNALRAGCSYSTQRGNFNPGYFMQGEISKGHTLQKW
        QNALRAGCSYSTQRGNFNPGYFMQGEISKGHTLQKW
Subjt:  QNALRAGCSYSTQRGNFNPGYFMQGEISKGHTLQKW

XP_022989485.1 uncharacterized protein LOC111486529 [Cucurbita maxima]6.7e-6886.39Show/hide
Query:  MASPLPILLL-----LALYCSSVCGEELEGQGVTQAFQCFDNNLIYYGCESAYRLNPTGNLNVPLEATNLFCNGPCLIETQLLLNCLDHAFHNFLFYNKA
        MASPLP+LLL     LALYCSSVCGEE EGQGVTQ FQCFDNNLIY GCESAYRLNP+GNLNVPL+ATNLFCNGPCLIETQLLLNCLDHAF NFLFYNKA
Subjt:  MASPLPILLL-----LALYCSSVCGEELEGQGVTQAFQCFDNNLIYYGCESAYRLNPTGNLNVPLEATNLFCNGPCLIETQLLLNCLDHAFHNFLFYNKA

Query:  TVPDIQNALRAGCSYSTQRGNFNPGYFMQGEISKGHTLQKWTLSTHV
        TV  +QNALRAGCSYSTQRGNFNPGYFMQGEISKGHTLQKW    +V
Subjt:  TVPDIQNALRAGCSYSTQRGNFNPGYFMQGEISKGHTLQKWTLSTHV

XP_023529219.1 uncharacterized protein LOC111792117 [Cucurbita pepo subsp. pepo]2.2e-7193.01Show/hide
Query:  MASPLPILLLLALYCSSVCGEELEGQGVTQAFQCFDNNLIYYGCESAYRLNPTGNLNVPLEATNLFCNGPCLIETQLLLNCLDHAFHNFLFYNKATVPDI
        MASPLPILLLLALYCSSVCGEELEGQGVTQAFQCFDNNLIY GCESAYRLNPTGNLNVPLEATNLFCNGPCLIETQLLLNCLDHAFHNFLFYNKATV  +
Subjt:  MASPLPILLLLALYCSSVCGEELEGQGVTQAFQCFDNNLIYYGCESAYRLNPTGNLNVPLEATNLFCNGPCLIETQLLLNCLDHAFHNFLFYNKATVPDI

Query:  QNALRAGCSYSTQRGNFNPGYFMQGEISKGHT-LQKWTLSTHV
        QNALRAGCSYSTQRGNFNPGYFMQGEISKGHT LQKW    +V
Subjt:  QNALRAGCSYSTQRGNFNPGYFMQGEISKGHT-LQKWTLSTHV

TrEMBL top hitse value%identityAlignment
A0A0A0LYD5 Uncharacterized protein6.0e-4663.33Show/hide
Query:  MASP---LPILLLLALYCSSVCGE-----------ELEGQGVTQAFQCFDNNLIYYGCESAYRLNPTGNLNVPLEATNLFCNGPCLIETQLLLNCLDHAF
        MASP   LPI L LA+      G            E+ GQ V + F+CFDN  IY GCE AYRLNP+G+ NVP EATNLFCNGPCLIETQLLLNCLD+ F
Subjt:  MASP---LPILLLLALYCSSVCGE-----------ELEGQGVTQAFQCFDNNLIYYGCESAYRLNPTGNLNVPLEATNLFCNGPCLIETQLLLNCLDHAF

Query:  HNFLFYNKATVPDIQNALRAGCSYSTQRGNFNPGYFMQGEISKGHTLQKW
         NFLFYNKAT   ++NALR GCSYS+QRGNFN G FMQGE S+ HT QKW
Subjt:  HNFLFYNKATVPDIQNALRAGCSYSTQRGNFNPGYFMQGEISKGHTLQKW

A0A1S3BPH6 uncharacterized protein LOC1034921171.5e-4967.61Show/hide
Query:  MASPLPIL-----LLLALYCSSVCG-EELEGQGVTQAFQCFDNNLIYYGCESAYRLNPTGNLNVPLEATNLFCNGPCLIETQLLLNCLDHAFHNFLFYNK
        MASP+  L     L+++L C SV G +E+ GQ V ++F+CFDN  IY GCESAYRLNP+G+ NVP EATNLFCNGPCLIETQLLLNCLD++FHNFLFYNK
Subjt:  MASPLPIL-----LLLALYCSSVCG-EELEGQGVTQAFQCFDNNLIYYGCESAYRLNPTGNLNVPLEATNLFCNGPCLIETQLLLNCLDHAFHNFLFYNK

Query:  ATVPDIQNALRAGCSYSTQRGNFNPGYFMQGEISKGHTLQKW
        AT   ++NALR GCS+S+QRGNFN G FMQGE+SK HT Q+W
Subjt:  ATVPDIQNALRAGCSYSTQRGNFNPGYFMQGEISKGHTLQKW

A0A6J1E0J9 uncharacterized protein LOC1110252899.9e-4969.29Show/hide
Query:  MASP--LPILLLLA--LYCSSVCGEELEGQGVTQAFQCFDNNLIYYGCESAYRLNPTGNLNVPLEATNLFCNGPCLIETQLLLNCLDHAFHNFLFYNKAT
        MA P  LPILL LA  L   SVC EE+ GQ VT+A +CFDN  IY GC+S YRLNP+G+ NVP EATNLFC+GPCL+ET+L+L+CLD AF NFLFYNKA 
Subjt:  MASP--LPILLLLA--LYCSSVCGEELEGQGVTQAFQCFDNNLIYYGCESAYRLNPTGNLNVPLEATNLFCNGPCLIETQLLLNCLDHAFHNFLFYNKAT

Query:  VPDIQNALRAGCSYSTQRGNFNPGYFMQGEISKGHTLQKW
          +++NALRAGCSYS+QRGNFNPG FMQGEISK H+ QKW
Subjt:  VPDIQNALRAGCSYSTQRGNFNPGYFMQGEISKGHTLQKW

A0A6J1EZD6 uncharacterized protein LOC1114378115.6e-76100Show/hide
Query:  MASPLPILLLLALYCSSVCGEELEGQGVTQAFQCFDNNLIYYGCESAYRLNPTGNLNVPLEATNLFCNGPCLIETQLLLNCLDHAFHNFLFYNKATVPDI
        MASPLPILLLLALYCSSVCGEELEGQGVTQAFQCFDNNLIYYGCESAYRLNPTGNLNVPLEATNLFCNGPCLIETQLLLNCLDHAFHNFLFYNKATVPDI
Subjt:  MASPLPILLLLALYCSSVCGEELEGQGVTQAFQCFDNNLIYYGCESAYRLNPTGNLNVPLEATNLFCNGPCLIETQLLLNCLDHAFHNFLFYNKATVPDI

Query:  QNALRAGCSYSTQRGNFNPGYFMQGEISKGHTLQKW
        QNALRAGCSYSTQRGNFNPGYFMQGEISKGHTLQKW
Subjt:  QNALRAGCSYSTQRGNFNPGYFMQGEISKGHTLQKW

A0A6J1JMH7 uncharacterized protein LOC1114865293.3e-6886.39Show/hide
Query:  MASPLPILLL-----LALYCSSVCGEELEGQGVTQAFQCFDNNLIYYGCESAYRLNPTGNLNVPLEATNLFCNGPCLIETQLLLNCLDHAFHNFLFYNKA
        MASPLP+LLL     LALYCSSVCGEE EGQGVTQ FQCFDNNLIY GCESAYRLNP+GNLNVPL+ATNLFCNGPCLIETQLLLNCLDHAF NFLFYNKA
Subjt:  MASPLPILLL-----LALYCSSVCGEELEGQGVTQAFQCFDNNLIYYGCESAYRLNPTGNLNVPLEATNLFCNGPCLIETQLLLNCLDHAFHNFLFYNKA

Query:  TVPDIQNALRAGCSYSTQRGNFNPGYFMQGEISKGHTLQKWTLSTHV
        TV  +QNALRAGCSYSTQRGNFNPGYFMQGEISKGHTLQKW    +V
Subjt:  TVPDIQNALRAGCSYSTQRGNFNPGYFMQGEISKGHTLQKWTLSTHV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G56320.1 BEST Arabidopsis thaliana protein match is: Glycine-rich protein family (TAIR:AT5G49350.2)1.6e-2754.08Show/hide
Query:  VTQAFQCFDNNLIYYGCESAYRLNPTGNLNVPLEATNLFCNGPCLIETQLLLNCLDHAFHNFLFYNKATVPDIQNALRAGCSYSTQRGNFNPGYFMQG
        V +A  CF+NNL+Y GC  A+RLN  G   VP E T+ FCNGPC  ET+L+L C++    +F+FYN+AT  D++NALR GCS S  RGNFN G + QG
Subjt:  VTQAFQCFDNNLIYYGCESAYRLNPTGNLNVPLEATNLFCNGPCLIETQLLLNCLDHAFHNFLFYNKATVPDIQNALRAGCSYSTQRGNFNPGYFMQG

AT5G49350.1 Glycine-rich protein family4.6e-2245.05Show/hide
Query:  VTQAFQCFDNNLIYYGCESAYRLNPTGNLNVPLEATNLFCNGPCLIETQLLLNCLDHAFHNFLFYNKATVPDIQNALRAGCSYSTQRGNFN
        V +A +C +   IY  C+ ++RL   G+LN+PL  T  FC GPC  ET L LNC++   H++ F+N+AT+ DI+  L++GCSY  +RG FN
Subjt:  VTQAFQCFDNNLIYYGCESAYRLNPTGNLNVPLEATNLFCNGPCLIETQLLLNCLDHAFHNFLFYNKATVPDIQNALRAGCSYSTQRGNFN

AT5G49350.2 Glycine-rich protein family4.6e-2245.05Show/hide
Query:  VTQAFQCFDNNLIYYGCESAYRLNPTGNLNVPLEATNLFCNGPCLIETQLLLNCLDHAFHNFLFYNKATVPDIQNALRAGCSYSTQRGNFN
        V +A +C +   IY  C+ ++RL   G+LN+PL  T  FC GPC  ET L LNC++   H++ F+N+AT+ DI+  L++GCSY  +RG FN
Subjt:  VTQAFQCFDNNLIYYGCESAYRLNPTGNLNVPLEATNLFCNGPCLIETQLLLNCLDHAFHNFLFYNKATVPDIQNALRAGCSYSTQRGNFN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCCCACTTCCCATCCTTCTCCTTCTCGCCCTCTACTGCTCCTCAGTTTGTGGTGAGGAGCTTGAAGGACAAGGGGTGACCCAAGCCTTCCAATGTTTTGACAA
CAACCTTATATACTATGGGTGTGAAAGTGCATATAGGTTGAACCCAACTGGGAATTTGAATGTCCCCCTCGAGGCTACTAATTTGTTTTGCAATGGACCATGCCTCATTG
AAACACAACTTCTACTTAACTGCCTCGATCATGCGTTCCATAACTTCTTGTTCTACAACAAAGCCACCGTGCCTGACATTCAAAACGCCCTTCGTGCTGGATGTAGCTAC
TCAACCCAAAGAGGGAACTTCAATCCCGGATATTTCATGCAAGGCGAAATCAGCAAAGGCCACACCTTACAAAAATGGACACTGTCCACACATGTGAGTATGGACCCACC
AGTCGTTTCGAATACCTCCTGGAACCTCTGTCTTGTGAGGCAAGCCTTCTCTGATAGTTGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCCCCACTTCCCATCCTTCTCCTTCTCGCCCTCTACTGCTCCTCAGTTTGTGGTGAGGAGCTTGAAGGACAAGGGGTGACCCAAGCCTTCCAATGTTTTGACAA
CAACCTTATATACTATGGGTGTGAAAGTGCATATAGGTTGAACCCAACTGGGAATTTGAATGTCCCCCTCGAGGCTACTAATTTGTTTTGCAATGGACCATGCCTCATTG
AAACACAACTTCTACTTAACTGCCTCGATCATGCGTTCCATAACTTCTTGTTCTACAACAAAGCCACCGTGCCTGACATTCAAAACGCCCTTCGTGCTGGATGTAGCTAC
TCAACCCAAAGAGGGAACTTCAATCCCGGATATTTCATGCAAGGCGAAATCAGCAAAGGCCACACCTTACAAAAATGGACACTGTCCACACATGTGAGTATGGACCCACC
AGTCGTTTCGAATACCTCCTGGAACCTCTGTCTTGTGAGGCAAGCCTTCTCTGATAGTTGTTAA
Protein sequenceShow/hide protein sequence
MASPLPILLLLALYCSSVCGEELEGQGVTQAFQCFDNNLIYYGCESAYRLNPTGNLNVPLEATNLFCNGPCLIETQLLLNCLDHAFHNFLFYNKATVPDIQNALRAGCSY
STQRGNFNPGYFMQGEISKGHTLQKWTLSTHVSMDPPVVSNTSWNLCLVRQAFSDSC