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Carg28120 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg28120
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptiongolgin candidate 5-like
Genome locationCarg_Chr20:10468586..10472861
RNA-Seq ExpressionCarg28120
SyntenyCarg28120
Gene Ontology termsNA
InterPro domainsIPR022091 - TATA element modulatory factor 1, TATA binding


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6571370.1 Golgin candidate 5, partial [Cucurbita argyrosperma subsp. sororia]6.1e-1870.11Show/hide
Query:  DSLAEELVKLTSQ------RLLLLPGIRAELESAKEKALGCARAYGRNVDEELEELRADIVDLKEMYREQVNLLVNKIQTSSSMGTA
        DSLAEELVKLTSQ         +LPGIRAELE+ + +        G   DEELEELRADIVDLKEMYREQVNLLVNKIQTSSSMGTA
Subjt:  DSLAEELVKLTSQ------RLLLLPGIRAELESAKEKALGCARAYGRNVDEELEELRADIVDLKEMYREQVNLLVNKIQTSSSMGTA

KAG7011139.1 Golgin candidate 5, partial [Cucurbita argyrosperma subsp. argyrosperma]9.0e-78100Show/hide
Query:  MSRGAAKPSKSRDSEQLKSGSKYLAAKEEADTQGVQTKLIRMKSGDLSKETQGRVGEESLSIESCCSTVTWHNRWNLSVDSLAEELVKLTSQRLLLLPGI
        MSRGAAKPSKSRDSEQLKSGSKYLAAKEEADTQGVQTKLIRMKSGDLSKETQGRVGEESLSIESCCSTVTWHNRWNLSVDSLAEELVKLTSQRLLLLPGI
Subjt:  MSRGAAKPSKSRDSEQLKSGSKYLAAKEEADTQGVQTKLIRMKSGDLSKETQGRVGEESLSIESCCSTVTWHNRWNLSVDSLAEELVKLTSQRLLLLPGI

Query:  RAELESAKEKALGCARAYGRNVDEELEELRADIVDLKEMYREQVNLLVNKIQTSSSMGTA
        RAELESAKEKALGCARAYGRNVDEELEELRADIVDLKEMYREQVNLLVNKIQTSSSMGTA
Subjt:  RAELESAKEKALGCARAYGRNVDEELEELRADIVDLKEMYREQVNLLVNKIQTSSSMGTA

XP_022928026.1 golgin candidate 5-like [Cucurbita moschata]6.1e-1870.11Show/hide
Query:  DSLAEELVKLTSQ------RLLLLPGIRAELESAKEKALGCARAYGRNVDEELEELRADIVDLKEMYREQVNLLVNKIQTSSSMGTA
        DSLAEELVKLTSQ         +LPGIRAELE+ + +        G   DEELEELRADIVDLKEMYREQVNLLVNKIQTSSSMGTA
Subjt:  DSLAEELVKLTSQ------RLLLLPGIRAELESAKEKALGCARAYGRNVDEELEELRADIVDLKEMYREQVNLLVNKIQTSSSMGTA

XP_022971745.1 golgin candidate 5-like [Cucurbita maxima]6.1e-1870.11Show/hide
Query:  DSLAEELVKLTSQ------RLLLLPGIRAELESAKEKALGCARAYGRNVDEELEELRADIVDLKEMYREQVNLLVNKIQTSSSMGTA
        DSLAEELVKLTSQ         +LPGIRAELE+ + +        G   DEELEELRADIVDLKEMYREQVNLLVNKIQTSSSMGTA
Subjt:  DSLAEELVKLTSQ------RLLLLPGIRAELESAKEKALGCARAYGRNVDEELEELRADIVDLKEMYREQVNLLVNKIQTSSSMGTA

XP_023512322.1 golgin candidate 5 [Cucurbita pepo subsp. pepo]2.3e-1768.97Show/hide
Query:  DSLAEELVKLTSQ------RLLLLPGIRAELESAKEKALGCARAYGRNVDEELEELRADIVDLKEMYREQVNLLVNKIQTSSSMGTA
        DSLAEELVKLTSQ         +LPGIRAELE+ + +        G   DEELEELRADIVDLKEMYREQVNLLVNKIQTSSSMG A
Subjt:  DSLAEELVKLTSQ------RLLLLPGIRAELESAKEKALGCARAYGRNVDEELEELRADIVDLKEMYREQVNLLVNKIQTSSSMGTA

TrEMBL top hitse value%identityAlignment
A0A6J1EJ47 golgin candidate 5-like3.0e-1870.11Show/hide
Query:  DSLAEELVKLTSQ------RLLLLPGIRAELESAKEKALGCARAYGRNVDEELEELRADIVDLKEMYREQVNLLVNKIQTSSSMGTA
        DSLAEELVKLTSQ         +LPGIRAELE+ + +        G   DEELEELRADIVDLKEMYREQVNLLVNKIQTSSSMGTA
Subjt:  DSLAEELVKLTSQ------RLLLLPGIRAELESAKEKALGCARAYGRNVDEELEELRADIVDLKEMYREQVNLLVNKIQTSSSMGTA

A0A6J1G6X1 golgin candidate 5-like isoform X14.7e-1669.32Show/hide
Query:  DSLAEELVKLTSQRLLL------LPGIRAELESAKEKALGCARAYGRNVDEELEELRADIVDLKEMYREQVNLLVNKIQT-SSSMGTA
        DSLAEELVKLTSQ   L      LPGIRAELE+ + +        G   DEELEELRADIVDLKEMYREQVNLLVNKIQ  SSSMGTA
Subjt:  DSLAEELVKLTSQRLLL------LPGIRAELESAKEKALGCARAYGRNVDEELEELRADIVDLKEMYREQVNLLVNKIQT-SSSMGTA

A0A6J1G7A8 golgin candidate 5-like isoform X24.7e-1669.32Show/hide
Query:  DSLAEELVKLTSQRLLL------LPGIRAELESAKEKALGCARAYGRNVDEELEELRADIVDLKEMYREQVNLLVNKIQT-SSSMGTA
        DSLAEELVKLTSQ   L      LPGIRAELE+ + +        G   DEELEELRADIVDLKEMYREQVNLLVNKIQ  SSSMGTA
Subjt:  DSLAEELVKLTSQRLLL------LPGIRAELESAKEKALGCARAYGRNVDEELEELRADIVDLKEMYREQVNLLVNKIQT-SSSMGTA

A0A6J1I6L0 golgin candidate 5-like3.0e-1870.11Show/hide
Query:  DSLAEELVKLTSQ------RLLLLPGIRAELESAKEKALGCARAYGRNVDEELEELRADIVDLKEMYREQVNLLVNKIQTSSSMGTA
        DSLAEELVKLTSQ         +LPGIRAELE+ + +        G   DEELEELRADIVDLKEMYREQVNLLVNKIQTSSSMGTA
Subjt:  DSLAEELVKLTSQ------RLLLLPGIRAELESAKEKALGCARAYGRNVDEELEELRADIVDLKEMYREQVNLLVNKIQTSSSMGTA

A0A6J1L7N6 golgin candidate 5-like3.6e-1669.32Show/hide
Query:  DSLAEELVKLTSQRLLL------LPGIRAELESAKEKALGCARAYGRNVDEELEELRADIVDLKEMYREQVNLLVNKIQT-SSSMGTA
        DSLAEELVKLTSQ   L      LPGIRAELE+ + +        G   DEELEELRADIVDLKEMYREQVNLLVNKIQ  SSSMGTA
Subjt:  DSLAEELVKLTSQRLLL------LPGIRAELESAKEKALGCARAYGRNVDEELEELRADIVDLKEMYREQVNLLVNKIQT-SSSMGTA

SwissProt top hitse value%identityAlignment
Q0WVL7 Golgin candidate 51.5e-1460.76Show/hide
Query:  DSLAEELVKLTSQRLLL------LPGIRAELESAKEKALGCARAYGRNVDEELEELRADIVDLKEMYREQVNLLVNKIQ
        DSLAEELVK+T++   L      +PGI+AELE+ +++        G   DEELEELRADIVDLKEMYREQVN+LVNKIQ
Subjt:  DSLAEELVKLTSQRLLL------LPGIRAELESAKEKALGCARAYGRNVDEELEELRADIVDLKEMYREQVNLLVNKIQ

Arabidopsis top hitse value%identityAlignment
AT1G79830.1 golgin candidate 51.0e-1560.76Show/hide
Query:  DSLAEELVKLTSQRLLL------LPGIRAELESAKEKALGCARAYGRNVDEELEELRADIVDLKEMYREQVNLLVNKIQ
        DSLAEELVK+T++   L      +PGI+AELE+ +++        G   DEELEELRADIVDLKEMYREQVN+LVNKIQ
Subjt:  DSLAEELVKLTSQRLLL------LPGIRAELESAKEKALGCARAYGRNVDEELEELRADIVDLKEMYREQVNLLVNKIQ

AT1G79830.2 golgin candidate 51.0e-1560.76Show/hide
Query:  DSLAEELVKLTSQRLLL------LPGIRAELESAKEKALGCARAYGRNVDEELEELRADIVDLKEMYREQVNLLVNKIQ
        DSLAEELVK+T++   L      +PGI+AELE+ +++        G   DEELEELRADIVDLKEMYREQVN+LVNKIQ
Subjt:  DSLAEELVKLTSQRLLL------LPGIRAELESAKEKALGCARAYGRNVDEELEELRADIVDLKEMYREQVNLLVNKIQ

AT1G79830.3 golgin candidate 51.0e-1560.76Show/hide
Query:  DSLAEELVKLTSQRLLL------LPGIRAELESAKEKALGCARAYGRNVDEELEELRADIVDLKEMYREQVNLLVNKIQ
        DSLAEELVK+T++   L      +PGI+AELE+ +++        G   DEELEELRADIVDLKEMYREQVN+LVNKIQ
Subjt:  DSLAEELVKLTSQRLLL------LPGIRAELESAKEKALGCARAYGRNVDEELEELRADIVDLKEMYREQVNLLVNKIQ

AT1G79830.4 golgin candidate 51.0e-1560.76Show/hide
Query:  DSLAEELVKLTSQRLLL------LPGIRAELESAKEKALGCARAYGRNVDEELEELRADIVDLKEMYREQVNLLVNKIQ
        DSLAEELVK+T++   L      +PGI+AELE+ +++        G   DEELEELRADIVDLKEMYREQVN+LVNKIQ
Subjt:  DSLAEELVKLTSQRLLL------LPGIRAELESAKEKALGCARAYGRNVDEELEELRADIVDLKEMYREQVNLLVNKIQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTCGAGGCGCAGCAAAACCCTCGAAAAGTAGAGACAGCGAGCAGCTGAAATCAGGCAGTAAATATCTTGCAGCAAAAGAGGAAGCTGACACTCAGGGCGTGCAAAC
CAAACTTATTCGAATGAAATCAGGGGATCTTTCGAAGGAAACACAAGGAAGAGTTGGCGAAGAGTCTCTTAGCATAGAGAGCTGCTGCAGCACGGTGACTTGGCACAATC
GCTGGAATCTATCCGTGGACTCTCTTGCTGAGGAGCTAGTGAAGTTAACGTCACAGAGGCTGCTATTGTTACCTGGCATACGAGCAGAACTTGAAAGCGCTAAGGAGAAG
GCACTCGGCTGCGCTAGAGCTTATGGGAGAAACGTGGATGAGGAGCTGGAGGAACTTCGTGCAGATATTGTTGACTTGAAGGAGATGTACAGAGAACAAGTAAACTTGCT
TGTGAACAAGATTCAGACGAGTTCATCAATGGGTACAGCCTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCTCGAGGCGCAGCAAAACCCTCGAAAAGTAGAGACAGCGAGCAGCTGAAATCAGGCAGTAAATATCTTGCAGCAAAAGAGGAAGCTGACACTCAGGGCGTGCAAAC
CAAACTTATTCGAATGAAATCAGGGGATCTTTCGAAGGAAACACAAGGAAGAGTTGGCGAAGAGTCTCTTAGCATAGAGAGCTGCTGCAGCACGGTGACTTGGCACAATC
GCTGGAATCTATCCGTGGACTCTCTTGCTGAGGAGCTAGTGAAGTTAACGTCACAGAGGCTGCTATTGTTACCTGGCATACGAGCAGAACTTGAAAGCGCTAAGGAGAAG
GCACTCGGCTGCGCTAGAGCTTATGGGAGAAACGTGGATGAGGAGCTGGAGGAACTTCGTGCAGATATTGTTGACTTGAAGGAGATGTACAGAGAACAAGTAAACTTGCT
TGTGAACAAGATTCAGACGAGTTCATCAATGGGTACAGCCTGAGAAGTGATTTTGTATAGCACAACAGAGCTATGCAAGTGGTTAAAAACGGGGCCATTGCGATCGAGAC
GGGGAGTATTAAGATTTTGTGCATGTACTGAACAGTATATACTTGAACCGAAACTGAAATCTTTTTGAATGTGTTACATAATTCCCAACCGCATTGTAATTTTACAGTAT
ACCTTCATTTTTAGTGTACTTGTTACAGTATACAGTGATGGTTTCAAAGCTTG
Protein sequenceShow/hide protein sequence
MSRGAAKPSKSRDSEQLKSGSKYLAAKEEADTQGVQTKLIRMKSGDLSKETQGRVGEESLSIESCCSTVTWHNRWNLSVDSLAEELVKLTSQRLLLLPGIRAELESAKEK
ALGCARAYGRNVDEELEELRADIVDLKEMYREQVNLLVNKIQTSSSMGTA