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Carg28124 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg28124
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionRibonuclease P
Genome locationCarg_Chr01:6638674..6639779
RNA-Seq ExpressionCarg28124
SyntenyCarg28124
Gene Ontology termsGO:0001682 - tRNA 5'-leader removal (biological process)
GO:0006364 - rRNA processing (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0000172 - ribonuclease MRP complex (cellular component)
GO:0005655 - nucleolar ribonuclease P complex (cellular component)
GO:0004526 - ribonuclease P activity (molecular function)
GO:0033204 - ribonuclease P RNA binding (molecular function)
InterPro domainsIPR002759 - RNase P subunit Pop5/Rpp14/Rnp2-like
IPR038085 - RNase P subunit Pop5/Rpp14/Rnp2-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004139703.1 probable ribonuclease P/MRP protein subunit POP5 [Cucumis sativus]7.8e-7187.01Show/hide
Query:  MVSFKNRYLVFEVVLDPNKDVATDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQVRYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFN
        MV FKNRY+VFEV+LDPNKD+ TDDPIIITQYNVSKAIKDSILLNFGECGFAS+LGSFQV+YVNPITK+CIIRASREDYQNVWAAITMVRSISNCPVVFN
Subjt:  MVSFKNRYLVFEVVLDPNKDVATDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQVRYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFN

Query:  LLDLTGNSRACKNTALRLDELKFEQYKLMVGPRISDGVNLQMQNCLEKIRSLDN
        LLDL+GN+RACKNTALRL+ LKFEQYKLMVG  + D VNLQMQNCLEKI +L+N
Subjt:  LLDLTGNSRACKNTALRLDELKFEQYKLMVGPRISDGVNLQMQNCLEKIRSLDN

XP_022932062.1 probable ribonuclease P/MRP protein subunit POP5 [Cucurbita moschata]6.4e-81100Show/hide
Query:  MVSFKNRYLVFEVVLDPNKDVATDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQVRYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFN
        MVSFKNRYLVFEVVLDPNKDVATDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQVRYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFN
Subjt:  MVSFKNRYLVFEVVLDPNKDVATDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQVRYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFN

Query:  LLDLTGNSRACKNTALRLDELKFEQYKLMVGPRISDGVNLQMQNCLEKIRSLDN
        LLDLTGNSRACKNTALRLDELKFEQYKLMVGPRISDGVNLQMQNCLEKIRSLDN
Subjt:  LLDLTGNSRACKNTALRLDELKFEQYKLMVGPRISDGVNLQMQNCLEKIRSLDN

XP_022972913.1 probable ribonuclease P/MRP protein subunit POP5 [Cucurbita maxima]7.1e-8098.05Show/hide
Query:  MVSFKNRYLVFEVVLDPNKDVATDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQVRYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFN
        MVSFKNRYLVFEVVLDPNKDVATDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV+YVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFN
Subjt:  MVSFKNRYLVFEVVLDPNKDVATDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQVRYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFN

Query:  LLDLTGNSRACKNTALRLDELKFEQYKLMVGPRISDGVNLQMQNCLEKIRSLDN
        LLDLTGNSRACKNTALR+DELKFEQYKLMVGPRISDGVNLQMQNCLEKIR+LDN
Subjt:  LLDLTGNSRACKNTALRLDELKFEQYKLMVGPRISDGVNLQMQNCLEKIRSLDN

XP_023524475.1 probable ribonuclease P/MRP protein subunit POP5 [Cucurbita pepo subsp. pepo]1.3e-7896.75Show/hide
Query:  MVSFKNRYLVFEVVLDPNKDVATDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQVRYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFN
        MVSFKNRYLVFEV LDPNKDVATDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQVRYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFN
Subjt:  MVSFKNRYLVFEVVLDPNKDVATDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQVRYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFN

Query:  LLDLTGNSRACKNTALRLDELKFEQYKLMVGPRISDGVNLQMQNCLEKIRSLDN
        LLDLTGNSRACKNTALR+DELKFEQYKLMVGP ISDGVNLQM NCLEKIR+LDN
Subjt:  LLDLTGNSRACKNTALRLDELKFEQYKLMVGPRISDGVNLQMQNCLEKIRSLDN

XP_038899949.1 probable ribonuclease P/MRP protein subunit POP5 [Benincasa hispida]1.6e-7187.66Show/hide
Query:  MVSFKNRYLVFEVVLDPNKDVATDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQVRYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFN
        MV FKNRY+V EV+LDPNKD+ TDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV+YVNPITKLCIIRASREDYQNVWAAITMVR+ISNCPVVFN
Subjt:  MVSFKNRYLVFEVVLDPNKDVATDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQVRYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFN

Query:  LLDLTGNSRACKNTALRLDELKFEQYKLMVGPRISDGVNLQMQNCLEKIRSLDN
        LLDL+GN+RACKNTALRLD+LKFEQYKLMVG R+ D VNLQMQNCLEKI +L++
Subjt:  LLDLTGNSRACKNTALRLDELKFEQYKLMVGPRISDGVNLQMQNCLEKIRSLDN

TrEMBL top hitse value%identityAlignment
A0A1S3CEI9 Ribonuclease P9.4e-7085.71Show/hide
Query:  MVSFKNRYLVFEVVLDPNKDVATDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQVRYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFN
        MV FKNRY+VFEV+LDPNK++ TDDPIIITQYNVSKAIKDSILLNFGECGFAS+LGSFQV+YVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFN
Subjt:  MVSFKNRYLVFEVVLDPNKDVATDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQVRYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFN

Query:  LLDLTGNSRACKNTALRLDELKFEQYKLMVGPRISDGVNLQMQNCLEKIRSLDN
        LLDL+GN+RACKNTALRLD LKFEQYKLMVG  + D V + MQNCLEKI +L+N
Subjt:  LLDLTGNSRACKNTALRLDELKFEQYKLMVGPRISDGVNLQMQNCLEKIRSLDN

A0A5D3CDD4 Ribonuclease P2.5e-7086.36Show/hide
Query:  MVSFKNRYLVFEVVLDPNKDVATDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQVRYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFN
        MV FKNRY+VFEV+LDPNK++ TDDPIIITQYNVSKAIKDSILLNFGECGFAS+LGSFQV+YVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFN
Subjt:  MVSFKNRYLVFEVVLDPNKDVATDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQVRYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFN

Query:  LLDLTGNSRACKNTALRLDELKFEQYKLMVGPRISDGVNLQMQNCLEKIRSLDN
        LLDL+GN+RACKNTALRLD LKFEQYKLMVG  + D V +QMQNCLEKI +L+N
Subjt:  LLDLTGNSRACKNTALRLDELKFEQYKLMVGPRISDGVNLQMQNCLEKIRSLDN

A0A6J1CLH1 Ribonuclease P6.7e-6883.01Show/hide
Query:  MVSFKNRYLVFEVVLDPNKDVATDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQVRYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFN
        MV ++NRYL+ EV+LDP KD ATDD IIITQYN+SKAIKDSILLNFGECGFAS+LGSFQVRYVNPITKLCIIR S+EDYQ VWAAITMVR+I NCPV+FN
Subjt:  MVSFKNRYLVFEVVLDPNKDVATDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQVRYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFN

Query:  LLDLTGNSRACKNTALRLDELKFEQYKLMVGPRISDGVNLQMQNCLEKIRSLD
        LLDL GN+RACKNTALR +ELKFEQYKLMVG R+SD VNLQMQNCLEKIR+ D
Subjt:  LLDLTGNSRACKNTALRLDELKFEQYKLMVGPRISDGVNLQMQNCLEKIRSLD

A0A6J1EVL4 Ribonuclease P3.1e-81100Show/hide
Query:  MVSFKNRYLVFEVVLDPNKDVATDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQVRYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFN
        MVSFKNRYLVFEVVLDPNKDVATDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQVRYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFN
Subjt:  MVSFKNRYLVFEVVLDPNKDVATDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQVRYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFN

Query:  LLDLTGNSRACKNTALRLDELKFEQYKLMVGPRISDGVNLQMQNCLEKIRSLDN
        LLDLTGNSRACKNTALRLDELKFEQYKLMVGPRISDGVNLQMQNCLEKIRSLDN
Subjt:  LLDLTGNSRACKNTALRLDELKFEQYKLMVGPRISDGVNLQMQNCLEKIRSLDN

A0A6J1IBH7 Ribonuclease P3.4e-8098.05Show/hide
Query:  MVSFKNRYLVFEVVLDPNKDVATDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQVRYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFN
        MVSFKNRYLVFEVVLDPNKDVATDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV+YVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFN
Subjt:  MVSFKNRYLVFEVVLDPNKDVATDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQVRYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFN

Query:  LLDLTGNSRACKNTALRLDELKFEQYKLMVGPRISDGVNLQMQNCLEKIRSLDN
        LLDLTGNSRACKNTALR+DELKFEQYKLMVGPRISDGVNLQMQNCLEKIR+LDN
Subjt:  LLDLTGNSRACKNTALRLDELKFEQYKLMVGPRISDGVNLQMQNCLEKIRSLDN

SwissProt top hitse value%identityAlignment
Q1JQ92 Ribonuclease P/MRP protein subunit POP58.9e-0933.33Show/hide
Query:  MVSFKNRYLVFEVVL-DPNKDVATDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQVRYVNPITKLCIIRASREDYQNVWAAITMVRSISN----C
        MV FK+RYL+ EVV  DP   +  +D ++ T       ++D+I    G  G A+    F VRY+N  T + ++R  +E Y+ VW+A+  + S+ N     
Subjt:  MVSFKNRYLVFEVVL-DPNKDVATDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQVRYVNPITKLCIIRASREDYQNVWAAITMVRSISN----C

Query:  PVVFNLLDLTGNSRACK
        P   N L + G  R C+
Subjt:  PVVFNLLDLTGNSRACK

Q54EP3 Probable ribonuclease P/MRP protein subunit POP55.6e-1130.51Show/hide
Query:  MVSFKNRYLVFEVVLDPNKDVATDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQVRYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFN
        MV  KNRYL+ EV+   N+         + Q+ +S  +K+ +    GE  + +   + ++ YVNP T + IIR S E Y+++W A+T++ S    P+ F 
Subjt:  MVSFKNRYLVFEVVLDPNKDVATDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQVRYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFN

Query:  LLDLTGNSRACKNTALRL
        ++ + G+ R C+  A+++
Subjt:  LLDLTGNSRACKNTALRL

Q6AWV1 Probable ribonuclease P/MRP protein subunit POP59.7e-4860.65Show/hide
Query:  MVSFKNRYLVFEVVLDPNKDVATD-DPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQVRYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVF
        MV FKNRY++ EV LDP+KD+  +  PII+TQ+N+SKAIKDSIL+NFGECG  SSLGSFQV+YVNPITKLCI+R+SRE+++ VW AIT+V+SI NCPV+ 
Subjt:  MVSFKNRYLVFEVVLDPNKDVATD-DPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQVRYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVF

Query:  NLLDLTGNSRACKNTALRLDELKFEQYKLMVGPRISDGVNLQMQNCLEKIRSLDN
        NLLD++G  RAC++TAL+ D+ KFEQ        +S+    QM   LEKI+ L+N
Subjt:  NLLDLTGNSRACKNTALRLDELKFEQYKLMVGPRISDGVNLQMQNCLEKIRSLDN

Q969H6 Ribonuclease P/MRP protein subunit POP58.0e-1034.19Show/hide
Query:  MVSFKNRYLVFEVVL-DPNKDVATDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQVRYVNPITKLCIIRASREDYQNVWAAITMVRSISN----C
        MV FK+RYL+ E+V  DP   ++ DD ++      S  ++D+I    G  G A+    F VRY+N  T + ++R  +E YQ VW+A+  +  + N     
Subjt:  MVSFKNRYLVFEVVL-DPNKDVATDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQVRYVNPITKLCIIRASREDYQNVWAAITMVRSISN----C

Query:  PVVFNLLDLTGNSRACK
        P  FN L + G  R C+
Subjt:  PVVFNLLDLTGNSRACK

Q9UU90 Ribonuclease P/MRP protein subunit POP52.0e-1332.12Show/hide
Query:  MVSFKNRYLVFEVVLDPNKDVATDDPII-----ITQYNVSKAIKDSILLNFGECGFASSLGSFQVRYVNPITKLCIIRASREDYQNVWAAITMVRSISNC
        MV FK+RYL+FE VL P      D P I     IT  ++SK I+  +  NFG+ G      S  V+Y +P T   I+R SR+ ++  WAA+ ++R +   
Subjt:  MVSFKNRYLVFEVVLDPNKDVATDDPII-----ITQYNVSKAIKDSILLNFGECGFASSLGSFQVRYVNPITKLCIIRASREDYQNVWAAITMVRSISNC

Query:  PVVFNLLDLTGNSRACKNTALRLDELKFEQYKLMVGP
        PV+  ++ ++G  +  +  A+  ++ +     LM  P
Subjt:  PVVFNLLDLTGNSRACKNTALRLDELKFEQYKLMVGP

Arabidopsis top hitse value%identityAlignment
AT1G04635.1 ribonuclease P family protein / Rpp14 family protein6.9e-4960.65Show/hide
Query:  MVSFKNRYLVFEVVLDPNKDVATD-DPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQVRYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVF
        MV FKNRY++ EV LDP+KD+  +  PII+TQ+N+SKAIKDSIL+NFGECG  SSLGSFQV+YVNPITKLCI+R+SRE+++ VW AIT+V+SI NCPV+ 
Subjt:  MVSFKNRYLVFEVVLDPNKDVATD-DPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQVRYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVF

Query:  NLLDLTGNSRACKNTALRLDELKFEQYKLMVGPRISDGVNLQMQNCLEKIRSLDN
        NLLD++G  RAC++TAL+ D+ KFEQ        +S+    QM   LEKI+ L+N
Subjt:  NLLDLTGNSRACKNTALRLDELKFEQYKLMVGPRISDGVNLQMQNCLEKIRSLDN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGAGTTTTAAGAACCGATACTTGGTGTTTGAAGTTGTGTTGGATCCCAATAAAGACGTTGCAACAGATGATCCTATTATCATTACCCAATATAATGTCTCAAAAGC
AATCAAGGACAGTATTCTTCTCAACTTCGGGGAGTGTGGCTTTGCTTCCTCACTTGGATCTTTTCAAGTTAGGTATGTAAATCCAATCACAAAGCTGTGTATCATTAGAG
CCTCTAGAGAGGACTACCAGAATGTATGGGCTGCTATTACGATGGTGAGGAGTATCAGCAATTGCCCCGTTGTATTTAATCTACTGGACCTAACTGGAAATAGCAGGGCT
TGCAAGAACACCGCCTTGAGGCTGGATGAACTGAAATTTGAGCAGTACAAGCTTATGGTTGGACCTCGTATCTCTGATGGCGTCAATCTGCAAATGCAGAACTGTCTGGA
GAAGATTAGAAGTTTAGATAACTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTGAGTTTTAAGAACCGATACTTGGTGTTTGAAGTTGTGTTGGATCCCAATAAAGACGTTGCAACAGATGATCCTATTATCATTACCCAATATAATGTCTCAAAAGC
AATCAAGGACAGTATTCTTCTCAACTTCGGGGAGTGTGGCTTTGCTTCCTCACTTGGATCTTTTCAAGTTAGGTATGTAAATCCAATCACAAAGCTGTGTATCATTAGAG
CCTCTAGAGAGGACTACCAGAATGTATGGGCTGCTATTACGATGGTGAGGAGTATCAGCAATTGCCCCGTTGTATTTAATCTACTGGACCTAACTGGAAATAGCAGGGCT
TGCAAGAACACCGCCTTGAGGCTGGATGAACTGAAATTTGAGCAGTACAAGCTTATGGTTGGACCTCGTATCTCTGATGGCGTCAATCTGCAAATGCAGAACTGTCTGGA
GAAGATTAGAAGTTTAGATAACTGATTTGATTGAATTTTGAATTTGTTTTCATATTGTTCACAGCTCAGCCCCTCTTCAGGTGTGTTTTTGCTACCGTAGTCTGGCTCTT
TATATGGGTATGATTTTCGAATCTTTCATATTAGGAAGAAAGATATTTAATTCTGACAATATTGAAGGTGTTCATAGTTCTTTCATAACAATGATGTCGAGAATGTTTGA
GACTATGCCATGCCAAGCAGTTGTCTAAGCTTATGTTAGATGTTTGTGACATGTTTAAAAAAGACGAGGTTTTTTGTTTTGTCGAGAGATTGAAGTTGTGAGAGAAATTC
AAACTATATGAATAACGAGTCCATGACC
Protein sequenceShow/hide protein sequence
MVSFKNRYLVFEVVLDPNKDVATDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQVRYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLTGNSRA
CKNTALRLDELKFEQYKLMVGPRISDGVNLQMQNCLEKIRSLDN