; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg28160 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg28160
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description60S ribosomal protein L18
Genome locationCarg_Chr05:10012771..10015105
RNA-Seq ExpressionCarg28160
SyntenyCarg28160
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003729 - mRNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR000039 - Ribosomal protein L18e
IPR021131 - Ribosomal protein L18e/L15P
IPR036227 - Ribosomal L18e/L15P superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6586240.1 60S ribosomal protein L18-3, partial [Cucurbita argyrosperma subsp. sororia]1.0e-6699.25Show/hide
Query:  MSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGP
        MSKVNKPPISLSRLIKFMKGKEDKIAV+VGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGP
Subjt:  MSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGP

Query:  APGVPHSHTKPYVRSKGRKFERARGKRNSRGYRV
        APGVPHSHTKPYVRSKGRKFERARGKRNSRGYRV
Subjt:  APGVPHSHTKPYVRSKGRKFERARGKRNSRGYRV

KAG7021075.1 60S ribosomal protein L18-3 [Cucurbita argyrosperma subsp. argyrosperma]3.0e-6699.25Show/hide
Query:  MSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGP
        MSKVNKPPISLSRLIKFMKGKE+KIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGP
Subjt:  MSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGP

Query:  APGVPHSHTKPYVRSKGRKFERARGKRNSRGYRV
        APGVPHSHTKPYVRSKGRKFERARGKRNSRGYRV
Subjt:  APGVPHSHTKPYVRSKGRKFERARGKRNSRGYRV

KAG7030228.1 60S ribosomal protein L18-2 [Cucurbita argyrosperma subsp. argyrosperma]7.8e-67100Show/hide
Query:  MSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGP
        MSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGP
Subjt:  MSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGP

Query:  APGVPHSHTKPYVRSKGRKFERARGKRNSRGYRV
        APGVPHSHTKPYVRSKGRKFERARGKRNSRGYRV
Subjt:  APGVPHSHTKPYVRSKGRKFERARGKRNSRGYRV

XP_022965965.1 60S ribosomal protein L18-3 [Cucurbita maxima]7.8e-67100Show/hide
Query:  MSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGP
        MSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGP
Subjt:  MSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGP

Query:  APGVPHSHTKPYVRSKGRKFERARGKRNSRGYRV
        APGVPHSHTKPYVRSKGRKFERARGKRNSRGYRV
Subjt:  APGVPHSHTKPYVRSKGRKFERARGKRNSRGYRV

XP_022999399.1 60S ribosomal protein L18-2 [Cucurbita maxima]7.8e-67100Show/hide
Query:  MSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGP
        MSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGP
Subjt:  MSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGP

Query:  APGVPHSHTKPYVRSKGRKFERARGKRNSRGYRV
        APGVPHSHTKPYVRSKGRKFERARGKRNSRGYRV
Subjt:  APGVPHSHTKPYVRSKGRKFERARGKRNSRGYRV

TrEMBL top hitse value%identityAlignment
A0A5A7U3L4 60S ribosomal protein L18-39.3e-6697.76Show/hide
Query:  MSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGP
        MSKVNKPPISLSRLIK+MKGKE KIAV+VGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGP
Subjt:  MSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGP

Query:  APGVPHSHTKPYVRSKGRKFERARGKRNSRGYRV
        APGVPHSHTKPYVRSKGRKFERARGKRNSRGYRV
Subjt:  APGVPHSHTKPYVRSKGRKFERARGKRNSRGYRV

A0A6J1FC57 60S ribosomal protein L18-3-like1.4e-6699.25Show/hide
Query:  MSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGP
        MSKVNKPPISLSRLIKFMKGKE+KIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGP
Subjt:  MSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGP

Query:  APGVPHSHTKPYVRSKGRKFERARGKRNSRGYRV
        APGVPHSHTKPYVRSKGRKFERARGKRNSRGYRV
Subjt:  APGVPHSHTKPYVRSKGRKFERARGKRNSRGYRV

A0A6J1G525 60S ribosomal protein L18-31.9e-6699.25Show/hide
Query:  MSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGP
        MSKVNKPPISLSRLIKF KGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGP
Subjt:  MSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGP

Query:  APGVPHSHTKPYVRSKGRKFERARGKRNSRGYRV
        APGVPHSHTKPYVRSKGRKFERARGKRNSRGYRV
Subjt:  APGVPHSHTKPYVRSKGRKFERARGKRNSRGYRV

A0A6J1HQ85 60S ribosomal protein L18-33.8e-67100Show/hide
Query:  MSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGP
        MSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGP
Subjt:  MSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGP

Query:  APGVPHSHTKPYVRSKGRKFERARGKRNSRGYRV
        APGVPHSHTKPYVRSKGRKFERARGKRNSRGYRV
Subjt:  APGVPHSHTKPYVRSKGRKFERARGKRNSRGYRV

A0A6J1KGZ8 60S ribosomal protein L18-23.8e-67100Show/hide
Query:  MSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGP
        MSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGP
Subjt:  MSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGP

Query:  APGVPHSHTKPYVRSKGRKFERARGKRNSRGYRV
        APGVPHSHTKPYVRSKGRKFERARGKRNSRGYRV
Subjt:  APGVPHSHTKPYVRSKGRKFERARGKRNSRGYRV

SwissProt top hitse value%identityAlignment
O22254 Putative 60S ribosomal protein L18-16.7e-5377.04Show/hide
Query:  MSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPL-GQNTVLLRGPKNSREAVKHFG
        MSKVNK P+SLSRL+++M GK+ KIAVIVGTVTDD+R+ +VPAL VTALRFTE+ARARI KAGGECLTFDQLAL  P   +NTVLLRGPKN+REAVKHFG
Subjt:  MSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPL-GQNTVLLRGPKNSREAVKHFG

Query:  PAPGVPHSHTKPYVRSKGRKFERARGKRNSRGYRV
        PAPGVPHSHTKPYVR  G+K E ARG+R SRG++V
Subjt:  PAPGVPHSHTKPYVRSKGRKFERARGKRNSRGYRV

O65729 60S ribosomal protein L18 (Fragment)1.8e-5883.58Show/hide
Query:  MSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGP
        MSKVN+PP+SLSRLIK+M+GKE KI V+VG VTDDIRVY+VP +KVTAL+FTETARARI+KAGGECLTFDQLALR PL  +TVLLRGPKN+REAVKHFGP
Subjt:  MSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGP

Query:  APGVPHSHTKPYVRSKGRKFERARGKRNSRGYRV
        APGVPHSHTKPYVRSKGRKFE+ARG+R SRG+RV
Subjt:  APGVPHSHTKPYVRSKGRKFERARGKRNSRGYRV

P42791 60S ribosomal protein L18-22.1e-6286.57Show/hide
Query:  MSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGP
        MSKVNK P+SLSRL++FM GKEDKIAV+VGT+TDD+RV+E+PA+KVTALRFTE ARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGP
Subjt:  MSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGP

Query:  APGVPHSHTKPYVRSKGRKFERARGKRNSRGYRV
        APGVPHSH+KPYVR+KGRKFE+ARGKR SRG++V
Subjt:  APGVPHSHTKPYVRSKGRKFERARGKRNSRGYRV

Q4PM04 60S ribosomal protein L184.5e-4971.85Show/hide
Query:  MSKVNKPPISLSRLIKFMK--GKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHF
        MS++NKP ISL+R+ +FMK  G+E+ IAV+VGTVTDD+R+Y+VP L++ ALR TE ARARI KAGGE LTFDQLA++AP G+ TVL++GP+NSREA +HF
Subjt:  MSKVNKPPISLSRLIKFMK--GKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHF

Query:  GPAPGVPHSHTKPYVRSKGRKFERARGKRNSRGYR
        GPAPGVPHSHTKPYVRSKGRKFERARG+R SR Y+
Subjt:  GPAPGVPHSHTKPYVRSKGRKFERARGKRNSRGYR

Q940B0 60S ribosomal protein L18-31.8e-6185.82Show/hide
Query:  MSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGP
        MSKVNK P+SLSRL++FM GK+DKIAV+VGT+TDD+RV+E+PA+KVTALRFTE ARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGP
Subjt:  MSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGP

Query:  APGVPHSHTKPYVRSKGRKFERARGKRNSRGYRV
        APGVPHS+TKPYVR KGRKFE+ARGKR SRG++V
Subjt:  APGVPHSHTKPYVRSKGRKFERARGKRNSRGYRV

Arabidopsis top hitse value%identityAlignment
AT2G47570.1 Ribosomal protein L18e/L15 superfamily protein4.7e-5477.04Show/hide
Query:  MSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPL-GQNTVLLRGPKNSREAVKHFG
        MSKVNK P+SLSRL+++M GK+ KIAVIVGTVTDD+R+ +VPAL VTALRFTE+ARARI KAGGECLTFDQLAL  P   +NTVLLRGPKN+REAVKHFG
Subjt:  MSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPL-GQNTVLLRGPKNSREAVKHFG

Query:  PAPGVPHSHTKPYVRSKGRKFERARGKRNSRGYRV
        PAPGVPHSHTKPYVR  G+K E ARG+R SRG++V
Subjt:  PAPGVPHSHTKPYVRSKGRKFERARGKRNSRGYRV

AT2G47570.2 Ribosomal protein L18e/L15 superfamily protein4.7e-5477.04Show/hide
Query:  MSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPL-GQNTVLLRGPKNSREAVKHFG
        MSKVNK P+SLSRL+++M GK+ KIAVIVGTVTDD+R+ +VPAL VTALRFTE+ARARI KAGGECLTFDQLAL  P   +NTVLLRGPKN+REAVKHFG
Subjt:  MSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPL-GQNTVLLRGPKNSREAVKHFG

Query:  PAPGVPHSHTKPYVRSKGRKFERARGKRNSRGYRV
        PAPGVPHSHTKPYVR  G+K E ARG+R SRG++V
Subjt:  PAPGVPHSHTKPYVRSKGRKFERARGKRNSRGYRV

AT3G05590.1 ribosomal protein L181.5e-6386.57Show/hide
Query:  MSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGP
        MSKVNK P+SLSRL++FM GKEDKIAV+VGT+TDD+RV+E+PA+KVTALRFTE ARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGP
Subjt:  MSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGP

Query:  APGVPHSHTKPYVRSKGRKFERARGKRNSRGYRV
        APGVPHSH+KPYVR+KGRKFE+ARGKR SRG++V
Subjt:  APGVPHSHTKPYVRSKGRKFERARGKRNSRGYRV

AT5G27850.1 Ribosomal protein L18e/L15 superfamily protein1.2e-6285.82Show/hide
Query:  MSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGP
        MSKVNK P+SLSRL++FM GK+DKIAV+VGT+TDD+RV+E+PA+KVTALRFTE ARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGP
Subjt:  MSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGP

Query:  APGVPHSHTKPYVRSKGRKFERARGKRNSRGYRV
        APGVPHS+TKPYVR KGRKFE+ARGKR SRG++V
Subjt:  APGVPHSHTKPYVRSKGRKFERARGKRNSRGYRV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCAAGGTGAACAAGCCACCAATTTCTCTATCCAGACTTATCAAGTTCATGAAGGGAAAGGAAGATAAAATTGCCGTCATTGTGGGAACTGTGACCGACGACATTCG
CGTTTATGAAGTTCCAGCTTTGAAAGTGACAGCCTTGAGGTTTACTGAGACCGCAAGGGCAAGGATTGAGAAGGCAGGTGGTGAGTGCTTGACATTCGACCAGCTTGCCC
TGAGGGCTCCTCTCGGTCAGAATACGGTTCTTCTTCGTGGACCGAAGAATTCCCGTGAAGCCGTGAAGCACTTCGGTCCAGCTCCTGGTGTTCCTCACAGCCACACGAAA
CCATACGTGAGGTCGAAGGGAAGGAAGTTTGAGAGAGCAAGAGGAAAAAGAAACAGCAGGGGATACAGAGTTTAA
mRNA sequenceShow/hide mRNA sequence
CTTCATAAAAAGGGCCTTCAAAAACCCTAGAGCCATTTTCCTCCTCAGAGGTCGCCGTCGCCGTCGCAGAAGGGAAGGGTTTTCTCCACCATAAACGACCATGGGGATAG
ATCTTGTAGCAGGAGGTAAGAGCAAGAAGACCAAGAGGACTGCCCTAAGTCCGATGATATCTACCTCAAGCTTCTTGTTAAGCTGTACCGGTTTCTTGTCCGAAGAACTG
GAAGCAATTTCAATGCAGTGATCCTGAAGCGCTTGTTCATGAGCAAGGTGAACAAGCCACCAATTTCTCTATCCAGACTTATCAAGTTCATGAAGGGAAAGGAAGATAAA
ATTGCCGTCATTGTGGGAACTGTGACCGACGACATTCGCGTTTATGAAGTTCCAGCTTTGAAAGTGACAGCCTTGAGGTTTACTGAGACCGCAAGGGCAAGGATTGAGAA
GGCAGGTGGTGAGTGCTTGACATTCGACCAGCTTGCCCTGAGGGCTCCTCTCGGTCAGAATACGGTTCTTCTTCGTGGACCGAAGAATTCCCGTGAAGCCGTGAAGCACT
TCGGTCCAGCTCCTGGTGTTCCTCACAGCCACACGAAACCATACGTGAGGTCGAAGGGAAGGAAGTTTGAGAGAGCAAGAGGAAAAAGAAACAGCAGGGGATACAGAGTT
TAATTTCATCCTATGTTCGACCCTTTTTGTGAGACAAAAAATTCATGTTTTGCTAGACTTGCAGAGATATTATTATGAGACTCAGTTATGTCTTAGTACAAGTTTTCATT
ATTATAAAACCTTAATCGTATTCAGTGAAAGATCTTGATTGAA
Protein sequenceShow/hide protein sequence
MSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTK
PYVRSKGRKFERARGKRNSRGYRV