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Carg28161 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg28161
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionkeratin, type II cytoskeletal 2 epidermal isoform X1
Genome locationCarg_Chr09:9476902..9483396
RNA-Seq ExpressionCarg28161
SyntenyCarg28161
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7025114.1 hypothetical protein SDJN02_13937 [Cucurbita argyrosperma subsp. argyrosperma]4.5e-67100Show/hide
Query:  MPRNMNGSRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGFLLQLGFGVLVSGCGLGLGFGYAIEELLLFCHQETFLDFHFYFIS
        MPRNMNGSRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGFLLQLGFGVLVSGCGLGLGFGYAIEELLLFCHQETFLDFHFYFIS
Subjt:  MPRNMNGSRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGFLLQLGFGVLVSGCGLGLGFGYAIEELLLFCHQETFLDFHFYFIS

Query:  RDEIGALVDELALNTKKLIRVTAQEIDKWKR
        RDEIGALVDELALNTKKLIRVTAQEIDKWKR
Subjt:  RDEIGALVDELALNTKKLIRVTAQEIDKWKR
XP_022932819.1 keratin, type II cytoskeletal 2 epidermal isoform X1 [Cucurbita moschata]1.1e-4172.41Show/hide
Query:  MPRNMNGSRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGF-------LLQLGFGVLVSGCGLGLGFGY------AIEELLLFCH
        MPRNMNGSRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGG         LQLGFG L +GCG+GLGFGY      A ++   + +
Subjt:  MPRNMNGSRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGF-------LLQLGFGVLVSGCGLGLGFGY------AIEELLLFCH

Query:  QETFLD-FHFYFISRDEIGALVDELALNTKKLIRVTAQEIDKWKR
            L+     F  RDEIGALVDELALNTKKLIRVTAQEIDKWKR
Subjt:  QETFLD-FHFYFISRDEIGALVDELALNTKKLIRVTAQEIDKWKR
XP_022932820.1 keratin, type II cytoskeletal 2 epidermal isoform X2 [Cucurbita moschata]5.0e-4271.53Show/hide
Query:  MPRNMNGSRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGF-------LLQLGFGVLVSGCGLGLGFGY------AIEELLLFCH
        MPRNMNGSRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGG         LQLGFG L +GCG+GLGFGY      A ++   + +
Subjt:  MPRNMNGSRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGF-------LLQLGFGVLVSGCGLGLGFGY------AIEELLLFCH

Query:  QETFLDFHFYFISRDEIGALVDELALNTKKLIRVTAQEIDKWKR
            L+       +DEIGALVDELALNTKKLIRVTAQEIDKWKR
Subjt:  QETFLDFHFYFISRDEIGALVDELALNTKKLIRVTAQEIDKWKR
XP_023521208.1 ATP-dependent RNA helicase glh-2 isoform X1 [Cucurbita pepo subsp. pepo]3.2e-4171.72Show/hide
Query:  MPRNMNGSRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGF-------LLQLGFGVLVSGCGLGLGFGY------AIEELLLFCH
        MPRNMNGSRHEG EDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGG         LQLGFG L +GCG+GLGFGY      A ++   + +
Subjt:  MPRNMNGSRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGF-------LLQLGFGVLVSGCGLGLGFGY------AIEELLLFCH

Query:  QETFLDFH-FYFISRDEIGALVDELALNTKKLIRVTAQEIDKWKR
            L+ H   F  RDEIGALVDELALNTKKLIRVTA+EIDKWKR
Subjt:  QETFLDFH-FYFISRDEIGALVDELALNTKKLIRVTAQEIDKWKR
XP_023521209.1 fibroin heavy chain isoform X2 [Cucurbita pepo subsp. pepo]1.5e-4170.83Show/hide
Query:  MPRNMNGSRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGF-------LLQLGFGVLVSGCGLGLGFGY------AIEELLLFCH
        MPRNMNGSRHEG EDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGG         LQLGFG L +GCG+GLGFGY      A ++   + +
Subjt:  MPRNMNGSRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGF-------LLQLGFGVLVSGCGLGLGFGY------AIEELLLFCH

Query:  QETFLDFHFYFISRDEIGALVDELALNTKKLIRVTAQEIDKWKR
            L+ H     +DEIGALVDELALNTKKLIRVTA+EIDKWKR
Subjt:  QETFLDFHFYFISRDEIGALVDELALNTKKLIRVTAQEIDKWKR
TrEMBL top hitse value%identityAlignment
A0A1S4E347 glycine-rich cell wall structural protein 12.4e-3460.69Show/hide
Query:  MPRNMNGSRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGF-------LLQLGFGVLVSGCGLGLGFGYAI------EELLLFCH
        MPRNMNG+R+  GEDE G+LW LPVLKSSR G LGPAFGLGVGCGVGFGIGLVGG         LQLGFG L +GCG+GLGFGY +      ++   + +
Subjt:  MPRNMNGSRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGF-------LLQLGFGVLVSGCGLGLGFGYAI------EELLLFCH

Query:  QETFLDFH-FYFISRDEIGALVDELALNTKKLIRVTAQEIDKWKR
            L  H   F  +D+IGALVD+L LNTK+LIR T++EIDKWKR
Subjt:  QETFLDFH-FYFISRDEIGALVDELALNTKKLIRVTAQEIDKWKR
A0A6J1EY31 keratin, type II cytoskeletal 2 epidermal isoform X15.4e-4272.41Show/hide
Query:  MPRNMNGSRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGF-------LLQLGFGVLVSGCGLGLGFGY------AIEELLLFCH
        MPRNMNGSRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGG         LQLGFG L +GCG+GLGFGY      A ++   + +
Subjt:  MPRNMNGSRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGF-------LLQLGFGVLVSGCGLGLGFGY------AIEELLLFCH

Query:  QETFLD-FHFYFISRDEIGALVDELALNTKKLIRVTAQEIDKWKR
            L+     F  RDEIGALVDELALNTKKLIRVTAQEIDKWKR
Subjt:  QETFLD-FHFYFISRDEIGALVDELALNTKKLIRVTAQEIDKWKR
A0A6J1F360 keratin, type II cytoskeletal 2 epidermal isoform X22.4e-4271.53Show/hide
Query:  MPRNMNGSRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGF-------LLQLGFGVLVSGCGLGLGFGY------AIEELLLFCH
        MPRNMNGSRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGG         LQLGFG L +GCG+GLGFGY      A ++   + +
Subjt:  MPRNMNGSRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGF-------LLQLGFGVLVSGCGLGLGFGY------AIEELLLFCH

Query:  QETFLDFHFYFISRDEIGALVDELALNTKKLIRVTAQEIDKWKR
            L+       +DEIGALVDELALNTKKLIRVTAQEIDKWKR
Subjt:  QETFLDFHFYFISRDEIGALVDELALNTKKLIRVTAQEIDKWKR
A0A6J1IA95 keratin, type II cytoskeletal 3 isoform X23.9e-4068.75Show/hide
Query:  MPRNMNGSRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGF-------LLQLGFGVLVSGCGLGLGFGY------AIEELLLFCH
        MPRNMNGSR EGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGG         LQLGFG L +GCG+GLGFGY      A ++   + +
Subjt:  MPRNMNGSRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGF-------LLQLGFGVLVSGCGLGLGFGY------AIEELLLFCH

Query:  QETFLDFHFYFISRDEIGALVDELALNTKKLIRVTAQEIDKWKR
            L+       +DEIGA+VDELALNTKKLI+VTA+EIDKWKR
Subjt:  QETFLDFHFYFISRDEIGALVDELALNTKKLIRVTAQEIDKWKR
A0A6J1ICW2 keratin, type II cytoskeletal 3 isoform X18.6e-4069.66Show/hide
Query:  MPRNMNGSRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGF-------LLQLGFGVLVSGCGLGLGFGY------AIEELLLFCH
        MPRNMNGSR EGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGG         LQLGFG L +GCG+GLGFGY      A ++   + +
Subjt:  MPRNMNGSRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGF-------LLQLGFGVLVSGCGLGLGFGY------AIEELLLFCH

Query:  QETFLD-FHFYFISRDEIGALVDELALNTKKLIRVTAQEIDKWKR
            L+     F  RDEIGA+VDELALNTKKLI+VTA+EIDKWKR
Subjt:  QETFLD-FHFYFISRDEIGALVDELALNTKKLIRVTAQEIDKWKR
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G66820.1 glycine-rich protein2.0e-0447.27Show/hide
Query:  LGPAFGLGVGCGVGFGIGLVGGF-----------LLQLGFGVLVSGCGLGLGFGY
        +GP  G G+GCG G GIGL GG             + LGFG+   GCG+G GFGY
Subjt:  LGPAFGLGVGCGVGFGIGLVGGF-----------LLQLGFGVLVSGCGLGLGFGY
AT4G10330.1 glycine-rich protein2.6e-2544.27Show/hide
Query:  SRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVG---------GFLLQLGFGVLVSGCGLGLGFGYAIEELLLFCHQETFLDFHFYF
        +R   G+D+ G+LWKLP ++   IG++GPAFGLGVGCG GFG GL+G         G    LGFG   +GCG+G+GFGY +     + H  ++  ++   
Subjt:  SRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVG---------GFLLQLGFGVLVSGCGLGLGFGYAIEELLLFCHQETFLDFHFYF

Query:  ISRDEIGALVDELALNTKKLIRVTAQEIDKW
         S +E+ +L+DEL ++TKKL++ T  EIDKW
Subjt:  ISRDEIGALVDELALNTKKLIRVTAQEIDKW

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTCGAAACATGAACGGAAGCAGACACGAAGGCGGAGAAGATGAGAGCGGAATGCTGTGGAAGCTTCCAGTTTTGAAATCTTCCAGAATCGGAAGGTTAGGTCCCGC
CTTCGGCCTCGGCGTTGGTTGTGGCGTCGGCTTTGGCATCGGCCTCGTCGGAGGATTCCTGCTACAACTTGGCTTTGGTGTCTTGGTGTCTGGATGTGGACTTGGCTTAG
GATTTGGCTATGCTATAGAAGAACTTTTATTATTCTGTCATCAAGAAACATTTCTCGACTTCCATTTTTACTTTATCAGTAGGGACGAGATCGGCGCGCTTGTGGACGAG
CTCGCCCTCAATACAAAGAAGCTTATTCGAGTTACCGCACAGGAGATTGACAAGTGGAAAAGATGA
mRNA sequenceShow/hide mRNA sequence
ATATATATATATATATATATTCAATATAATTGTTTTTTTAAAATAAAAATTTAAATTTAAGAAGAAATTATAATTTATACCTAAAACCATATTTGACAAATTTGGCGAAT
GAAAAGAAAAAGATATCAGAAATGCCTCGAAACATGAACGGAAGCAGACACGAAGGCGGAGAAGATGAGAGCGGAATGCTGTGGAAGCTTCCAGTTTTGAAATCTTCCAG
AATCGGAAGGTTAGGTCCCGCCTTCGGCCTCGGCGTTGGTTGTGGCGTCGGCTTTGGCATCGGCCTCGTCGGAGGATTCCTGCTACAACTTGGCTTTGGTGTCTTGGTGT
CTGGATGTGGACTTGGCTTAGGATTTGGCTATGCTATAGAAGAACTTTTATTATTCTGTCATCAAGAAACATTTCTCGACTTCCATTTTTACTTTATCAGTAGGGACGAG
ATCGGCGCGCTTGTGGACGAGCTCGCCCTCAATACAAAGAAGCTTATTCGAGTTACCGCACAGGAGATTGACAAGTGGAAAAGATGA
Protein sequenceShow/hide protein sequence
MPRNMNGSRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGFLLQLGFGVLVSGCGLGLGFGYAIEELLLFCHQETFLDFHFYFISRDEIGALVDE
LALNTKKLIRVTAQEIDKWKR