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Carg28179 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg28179
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionRing/U-Box superfamily protein, putative isoform 1
Genome locationCarg_Chr04:11629878..11630309
RNA-Seq ExpressionCarg28179
SyntenyCarg28179
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7035972.1 hypothetical protein SDJN02_02772, partial [Cucurbita argyrosperma subsp. argyrosperma]6.1e-5481.25Show/hide
Query:  MEMREDSRQRMRRILQEIAAKILYLEVPQIDAEDHTSIPDVESSIQQIDTREEYDDIGVLSDHS---KNNDLENVDPLESTSHEELNEDLGMGVEPNDWQ
        MEMREDS QR RRI QE AA  LY EVPQID EDHTSIPDVESSI+QIDTREE DDIGVLSDHS   ++NDLENVDPLESTSHEELNE+LGMGVEPNDWQ
Subjt:  MEMREDSRQRMRRILQEIAAKILYLEVPQIDAEDHTSIPDVESSIQQIDTREEYDDIGVLSDHS---KNNDLENVDPLESTSHEELNEDLGMGVEPNDWQ

Query:  AYGFQRDEWKNSIEEDINEVG-KHHTTNWSGEFSSTTHRGDVHL
          GFQRDEW+NSIEEDINE   +  TTNWSGEF STTHRGD+HL
Subjt:  AYGFQRDEWKNSIEEDINEVG-KHHTTNWSGEFSSTTHRGDVHL

XP_022944250.1 uncharacterized protein LOC111448758 [Cucurbita moschata]8.0e-3863.64Show/hide
Query:  EMREDSRQRMRRILQEIAAKILYLEVPQIDAEDHTSIPDVESSIQQIDTREEYDDIGVLSDH---SKNNDLENVDPLESTSHEELNEDLGMGVEPNDWQA
        EM +DS Q +R ILQE A  +LY E+P+IDAE+HTS+ DVE SIQQ++TR+E  DIG++ DH    ++NDLENVDP ES SHEELNE+LGM VEPND Q 
Subjt:  EMREDSRQRMRRILQEIAAKILYLEVPQIDAEDHTSIPDVESSIQQIDTREEYDDIGVLSDH---SKNNDLENVDPLESTSHEELNEDLGMGVEPNDWQA

Query:  YGFQRDEWKNSIEEDINEVG-KHHTTNWSGEFSSTTHRGDVHL
         GFQ DEW+NS+EE+I+E   +   TNWSGEFSSTT+RGD HL
Subjt:  YGFQRDEWKNSIEEDINEVG-KHHTTNWSGEFSSTTHRGDVHL

XP_022986254.1 uncharacterized protein LOC111484063 [Cucurbita maxima]2.7e-3864.34Show/hide
Query:  EMREDSRQRMRRILQEIAAKILYLEVPQIDAEDHTSIPDVESSIQQIDTREEYDDIGVLSDH---SKNNDLENVDPLESTSHEELNEDLGMGVEPNDWQA
        EM +DS Q +R ILQE A  +LY E+P+IDAE+HTS+ DVE SIQQ++TR+E  DIG+  DH    ++NDLENVDP ES SHEELNE+LGM VEPND Q 
Subjt:  EMREDSRQRMRRILQEIAAKILYLEVPQIDAEDHTSIPDVESSIQQIDTREEYDDIGVLSDH---SKNNDLENVDPLESTSHEELNEDLGMGVEPNDWQA

Query:  YGFQRDEWKNSIEEDINEVG-KHHTTNWSGEFSSTTHRGDVHL
         GFQ DEW+NSIEE+I+E   +   TNWSGEFSSTT+RGD HL
Subjt:  YGFQRDEWKNSIEEDINEVG-KHHTTNWSGEFSSTTHRGDVHL

XP_022996393.1 uncharacterized protein LOC111491630 isoform X1 [Cucurbita maxima]4.8e-5178.47Show/hide
Query:  MEMREDSRQRMRRILQEIAAKILYLEVPQIDAEDHTSIPDVESSIQQIDTREEYDDIGVLSDHS---KNNDLENVDPLESTSHEELNEDLGMGVEPNDWQ
        MEMREDS QRMRRI QE AA ILY EVPQI  EDHTS+ DVESSI+QIDT EE DDIGVLSDHS   ++NDLENVDPLESTSHEELNE+LGMGVEPNDW 
Subjt:  MEMREDSRQRMRRILQEIAAKILYLEVPQIDAEDHTSIPDVESSIQQIDTREEYDDIGVLSDHS---KNNDLENVDPLESTSHEELNEDLGMGVEPNDWQ

Query:  AYGFQRDEWKNSIEEDINEVG-KHHTTNWSGEFSSTTHRGDVHL
          GFQ DEW+NSIEEDINE   +  TTNWSGEF STTHRGD+HL
Subjt:  AYGFQRDEWKNSIEEDINEVG-KHHTTNWSGEFSSTTHRGDVHL

XP_023541427.1 uncharacterized protein LOC111801613 [Cucurbita pepo subsp. pepo]8.8e-5380.56Show/hide
Query:  MEMREDSRQRMRRILQEIAAKILYLEVPQIDAEDHTSIPDVESSIQQIDTREEYDDIGVLSDHS---KNNDLENVDPLESTSHEELNEDLGMGVEPNDWQ
        MEMREDS QRMRRI QE AA  LY EVPQID EDHTSI DVESSI+QIDTREE DDIGVLSDHS   ++NDLENVDPLESTSHEELNE+LGMGVEPNDWQ
Subjt:  MEMREDSRQRMRRILQEIAAKILYLEVPQIDAEDHTSIPDVESSIQQIDTREEYDDIGVLSDHS---KNNDLENVDPLESTSHEELNEDLGMGVEPNDWQ

Query:  AYGFQRDEWKNSIEEDINEVG-KHHTTNWSGEFSSTTHRGDVHL
          GFQ DEW+NSIEEDINE   +  TTNWSGEF STTHRGD+HL
Subjt:  AYGFQRDEWKNSIEEDINEVG-KHHTTNWSGEFSSTTHRGDVHL

TrEMBL top hitse value%identityAlignment
A0A6J1CG48 uncharacterized protein LOC111011121 isoform X38.0e-3662.24Show/hide
Query:  MEMREDSRQRMRRILQEIAAKILYLEVPQIDAEDHTSIPDVESSIQQIDTREEYDDIGVLSDHSKN--NDLENVDPLESTSHEELNEDLGMGVEPNDWQA
        ME R+DS Q MRRILQE AA ILY E+PQ+DAEDH+++PDVE SIQ   T E   DIG+L  HS +  +DLEN+DP ESTSHEEL+E+LGMG EPND Q 
Subjt:  MEMREDSRQRMRRILQEIAAKILYLEVPQIDAEDHTSIPDVESSIQQIDTREEYDDIGVLSDHSKN--NDLENVDPLESTSHEELNEDLGMGVEPNDWQA

Query:  YGFQRDEWKNSIEEDINEVG-KHHTTNWSGEFSSTTHRGDVHL
        + FQ + W+NS EEDINE   +   T WSGEF ST +RGD+HL
Subjt:  YGFQRDEWKNSIEEDINEVG-KHHTTNWSGEFSSTTHRGDVHL

A0A6J1CGY0 uncharacterized protein LOC111011121 isoform X18.0e-3662.24Show/hide
Query:  MEMREDSRQRMRRILQEIAAKILYLEVPQIDAEDHTSIPDVESSIQQIDTREEYDDIGVLSDHSKN--NDLENVDPLESTSHEELNEDLGMGVEPNDWQA
        ME R+DS Q MRRILQE AA ILY E+PQ+DAEDH+++PDVE SIQ   T E   DIG+L  HS +  +DLEN+DP ESTSHEEL+E+LGMG EPND Q 
Subjt:  MEMREDSRQRMRRILQEIAAKILYLEVPQIDAEDHTSIPDVESSIQQIDTREEYDDIGVLSDHSKN--NDLENVDPLESTSHEELNEDLGMGVEPNDWQA

Query:  YGFQRDEWKNSIEEDINEVG-KHHTTNWSGEFSSTTHRGDVHL
        + FQ + W+NS EEDINE   +   T WSGEF ST +RGD+HL
Subjt:  YGFQRDEWKNSIEEDINEVG-KHHTTNWSGEFSSTTHRGDVHL

A0A6J1FXV7 uncharacterized protein LOC1114487583.9e-3863.64Show/hide
Query:  EMREDSRQRMRRILQEIAAKILYLEVPQIDAEDHTSIPDVESSIQQIDTREEYDDIGVLSDH---SKNNDLENVDPLESTSHEELNEDLGMGVEPNDWQA
        EM +DS Q +R ILQE A  +LY E+P+IDAE+HTS+ DVE SIQQ++TR+E  DIG++ DH    ++NDLENVDP ES SHEELNE+LGM VEPND Q 
Subjt:  EMREDSRQRMRRILQEIAAKILYLEVPQIDAEDHTSIPDVESSIQQIDTREEYDDIGVLSDH---SKNNDLENVDPLESTSHEELNEDLGMGVEPNDWQA

Query:  YGFQRDEWKNSIEEDINEVG-KHHTTNWSGEFSSTTHRGDVHL
         GFQ DEW+NS+EE+I+E   +   TNWSGEFSSTT+RGD HL
Subjt:  YGFQRDEWKNSIEEDINEVG-KHHTTNWSGEFSSTTHRGDVHL

A0A6J1JDJ8 uncharacterized protein LOC1114840631.3e-3864.34Show/hide
Query:  EMREDSRQRMRRILQEIAAKILYLEVPQIDAEDHTSIPDVESSIQQIDTREEYDDIGVLSDH---SKNNDLENVDPLESTSHEELNEDLGMGVEPNDWQA
        EM +DS Q +R ILQE A  +LY E+P+IDAE+HTS+ DVE SIQQ++TR+E  DIG+  DH    ++NDLENVDP ES SHEELNE+LGM VEPND Q 
Subjt:  EMREDSRQRMRRILQEIAAKILYLEVPQIDAEDHTSIPDVESSIQQIDTREEYDDIGVLSDH---SKNNDLENVDPLESTSHEELNEDLGMGVEPNDWQA

Query:  YGFQRDEWKNSIEEDINEVG-KHHTTNWSGEFSSTTHRGDVHL
         GFQ DEW+NSIEE+I+E   +   TNWSGEFSSTT+RGD HL
Subjt:  YGFQRDEWKNSIEEDINEVG-KHHTTNWSGEFSSTTHRGDVHL

A0A6J1KAM9 uncharacterized protein LOC111491630 isoform X12.3e-5178.47Show/hide
Query:  MEMREDSRQRMRRILQEIAAKILYLEVPQIDAEDHTSIPDVESSIQQIDTREEYDDIGVLSDHS---KNNDLENVDPLESTSHEELNEDLGMGVEPNDWQ
        MEMREDS QRMRRI QE AA ILY EVPQI  EDHTS+ DVESSI+QIDT EE DDIGVLSDHS   ++NDLENVDPLESTSHEELNE+LGMGVEPNDW 
Subjt:  MEMREDSRQRMRRILQEIAAKILYLEVPQIDAEDHTSIPDVESSIQQIDTREEYDDIGVLSDHS---KNNDLENVDPLESTSHEELNEDLGMGVEPNDWQ

Query:  AYGFQRDEWKNSIEEDINEVG-KHHTTNWSGEFSSTTHRGDVHL
          GFQ DEW+NSIEEDINE   +  TTNWSGEF STTHRGD+HL
Subjt:  AYGFQRDEWKNSIEEDINEVG-KHHTTNWSGEFSSTTHRGDVHL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGATGAGGGAAGATTCAAGACAACGTATGAGAAGAATTTTACAAGAAATTGCTGCAAAAATTTTATACCTTGAAGTTCCTCAAATTGATGCCGAGGATCATACTAG
CATACCAGATGTCGAATCTTCCATTCAACAAATTGATACCCGTGAGGAATATGATGATATTGGAGTATTATCAGATCATTCTAAAAACAATGATCTTGAAAATGTAGATC
CGCTCGAATCTACTTCTCACGAGGAACTGAATGAAGATCTAGGTATGGGAGTTGAGCCAAATGATTGGCAAGCATATGGTTTTCAACGGGATGAATGGAAAAATAGCATT
GAAGAAGATATAAACGAAGTTGGAAAGCATCACACTACTAATTGGTCTGGAGAATTCTCGAGTACGACACATAGAGGAGATGTTCATTTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAGATGAGGGAAGATTCAAGACAACGTATGAGAAGAATTTTACAAGAAATTGCTGCAAAAATTTTATACCTTGAAGTTCCTCAAATTGATGCCGAGGATCATACTAG
CATACCAGATGTCGAATCTTCCATTCAACAAATTGATACCCGTGAGGAATATGATGATATTGGAGTATTATCAGATCATTCTAAAAACAATGATCTTGAAAATGTAGATC
CGCTCGAATCTACTTCTCACGAGGAACTGAATGAAGATCTAGGTATGGGAGTTGAGCCAAATGATTGGCAAGCATATGGTTTTCAACGGGATGAATGGAAAAATAGCATT
GAAGAAGATATAAACGAAGTTGGAAAGCATCACACTACTAATTGGTCTGGAGAATTCTCGAGTACGACACATAGAGGAGATGTTCATTTGTAA
Protein sequenceShow/hide protein sequence
MEMREDSRQRMRRILQEIAAKILYLEVPQIDAEDHTSIPDVESSIQQIDTREEYDDIGVLSDHSKNNDLENVDPLESTSHEELNEDLGMGVEPNDWQAYGFQRDEWKNSI
EEDINEVGKHHTTNWSGEFSSTTHRGDVHL