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Carg28202 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg28202
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionRAB6-interacting golgin
Genome locationCarg_Chr13:2913872..2915759
RNA-Seq ExpressionCarg28202
SyntenyCarg28202
Gene Ontology termsGO:0005794 - Golgi apparatus (cellular component)
InterPro domainsIPR007033 - RAB6-interacting golgin


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008461743.1 PREDICTED: probable DNA double-strand break repair Rad50 ATPase [Cucumis melo]3.5e-6484Show/hide
Query:  MTTQKQSWEAQQSQ-------MQQRVKKAIGSPAREDQEEELSRSALALFRAKEEEIERKKMEMREKVENRLGRAEEATKRLAEIREELEGMTDPMRKEV
        MTTQKQSWEAQQ Q       +   V   IGSP +EDQEEE+SRSALALFRAKEEEIERKKMEMREKVE RLGRAEEATKRLAEIREELEGMTDPMRKEV
Subjt:  MTTQKQSWEAQQSQ-------MQQRVKKAIGSPAREDQEEELSRSALALFRAKEEEIERKKMEMREKVENRLGRAEEATKRLAEIREELEGMTDPMRKEV

Query:  SLIRKKIDLVNKELKPLGITCQKKEREYKEVLELLNEKNKEKSQLIAKLMELVNESEKLRMKKLEELSNNIDILH
        S IRKKIDLVNKELKPLG+TCQKKEREYKEVL+L NEKN+EKSQL++KLMELVNESEKLRM+KLEELS NIDILH
Subjt:  SLIRKKIDLVNKELKPLGITCQKKEREYKEVLELLNEKNKEKSQLIAKLMELVNESEKLRMKKLEELSNNIDILH

XP_022930056.1 uncharacterized protein LOC111436527 [Cucurbita moschata]4.0e-76100Show/hide
Query:  MTTQKQSWEAQQSQMQQRVKKAIGSPAREDQEEELSRSALALFRAKEEEIERKKMEMREKVENRLGRAEEATKRLAEIREELEGMTDPMRKEVSLIRKKI
        MTTQKQSWEAQQSQMQQRVKKAIGSPAREDQEEELSRSALALFRAKEEEIERKKMEMREKVENRLGRAEEATKRLAEIREELEGMTDPMRKEVSLIRKKI
Subjt:  MTTQKQSWEAQQSQMQQRVKKAIGSPAREDQEEELSRSALALFRAKEEEIERKKMEMREKVENRLGRAEEATKRLAEIREELEGMTDPMRKEVSLIRKKI

Query:  DLVNKELKPLGITCQKKEREYKEVLELLNEKNKEKSQLIAKLMELVNESEKLRMKKLEELSNNIDILH
        DLVNKELKPLGITCQKKEREYKEVLELLNEKNKEKSQLIAKLMELVNESEKLRMKKLEELSNNIDILH
Subjt:  DLVNKELKPLGITCQKKEREYKEVLELLNEKNKEKSQLIAKLMELVNESEKLRMKKLEELSNNIDILH

XP_022970344.1 uncharacterized protein LOC111469338 [Cucurbita maxima]5.2e-7699.4Show/hide
Query:  MTTQKQSWEAQQSQMQQRVKKAIGSPAREDQEEELSRSALALFRAKEEEIERKKMEMREKVENRLGRAEEATKRLAEIREELEGMTDPMRKEVSLIRKKI
        MTTQKQSWEAQQSQMQQRVKKAIGSPAREDQEEELSRSALALFRAKEEEIERKKMEMREKVENRLGRAEEATKRLAEIREELEGMTDPMRKEVSLIRKKI
Subjt:  MTTQKQSWEAQQSQMQQRVKKAIGSPAREDQEEELSRSALALFRAKEEEIERKKMEMREKVENRLGRAEEATKRLAEIREELEGMTDPMRKEVSLIRKKI

Query:  DLVNKELKPLGITCQKKEREYKEVLELLNEKNKEKSQLIAKLMELVNESEKLRMKKLEELSNNIDILH
        DLVNKELKPLGITCQKKEREYKEVLELLNEKNKEKSQL+AKLMELVNESEKLRMKKLEELSNNIDILH
Subjt:  DLVNKELKPLGITCQKKEREYKEVLELLNEKNKEKSQLIAKLMELVNESEKLRMKKLEELSNNIDILH

XP_023519806.1 uncharacterized protein LOC111783139 [Cucurbita pepo subsp. pepo]3.4e-7598.81Show/hide
Query:  MTTQKQSWEAQQSQMQQRVKKAIGSPAREDQEEELSRSALALFRAKEEEIERKKMEMREKVENRLGRAEEATKRLAEIREELEGMTDPMRKEVSLIRKKI
        MTTQKQSWEAQQSQMQQRVKKAIGSPAREDQEEELSRSALALFRAKEEEIERKKMEMREKVENRLGRAEEATKRLAEIREELEGMTDPMRKEVSLIRKKI
Subjt:  MTTQKQSWEAQQSQMQQRVKKAIGSPAREDQEEELSRSALALFRAKEEEIERKKMEMREKVENRLGRAEEATKRLAEIREELEGMTDPMRKEVSLIRKKI

Query:  DLVNKELKPLGITCQKKEREYKEVLELLNEKNKEKSQLIAKLMELVNESEKLRMKKLEELSNNIDILH
        DLVNKELKPLGITCQKKEREYKEVLELLNEKNKEKS+LIAKLMELVNESEKLRM KLEELSNNIDILH
Subjt:  DLVNKELKPLGITCQKKEREYKEVLELLNEKNKEKSQLIAKLMELVNESEKLRMKKLEELSNNIDILH

XP_038893849.1 uncharacterized protein LOC120082661 [Benincasa hispida]1.3e-6685.96Show/hide
Query:  MTTQKQSWEAQQSQMQQRVK----------KAIGSPAREDQEEELSRSALALFRAKEEEIERKKMEMREKVENRLGRAEEATKRLAEIREELEGMTDPMR
        MTT KQSWEAQQSQ  QRVK           AIGSP +EDQEEE+SRSALA+FRAKEEEIERKKMEMREKVE RLGRAEEATKRLAEIREELEGMTDPMR
Subjt:  MTTQKQSWEAQQSQMQQRVK----------KAIGSPAREDQEEELSRSALALFRAKEEEIERKKMEMREKVENRLGRAEEATKRLAEIREELEGMTDPMR

Query:  KEVSLIRKKIDLVNKELKPLGITCQKKEREYKEVLELLNEKNKEKSQLIAKLMELVNESEKLRMKKLEELSNNIDILH
        KEVS IRKKIDLVNKELKPLG+TCQKKEREYKEVL+L NEKNKEKSQL+AKLMELVNESEKLRMKKLEELS NIDILH
Subjt:  KEVSLIRKKIDLVNKELKPLGITCQKKEREYKEVLELLNEKNKEKSQLIAKLMELVNESEKLRMKKLEELSNNIDILH

TrEMBL top hitse value%identityAlignment
A0A0A0LY59 RAB6-interacting golgin1.1e-6384.27Show/hide
Query:  MTTQKQSWEAQQSQMQQRVKKA-----------IGSPAREDQEEELSRSALALFRAKEEEIERKKMEMREKVENRLGRAEEATKRLAEIREELEGMTDPM
        MTTQKQSWEAQQ    QRVK +           IGSP +EDQEEE+SRSALALFRAKEEEIERKKMEMREKVE RLGRAEEATKRLAEIREELEGMTDPM
Subjt:  MTTQKQSWEAQQSQMQQRVKKA-----------IGSPAREDQEEELSRSALALFRAKEEEIERKKMEMREKVENRLGRAEEATKRLAEIREELEGMTDPM

Query:  RKEVSLIRKKIDLVNKELKPLGITCQKKEREYKEVLELLNEKNKEKSQLIAKLMELVNESEKLRMKKLEELSNNIDIL
        RKEVS IRKKIDLVNKELKPLG+TCQKKEREYKEVL+L NEKNKEKSQL++KLMELVNESEKLRMKKLEELS NIDIL
Subjt:  RKEVSLIRKKIDLVNKELKPLGITCQKKEREYKEVLELLNEKNKEKSQLIAKLMELVNESEKLRMKKLEELSNNIDIL

A0A1S3CFV6 RAB6-interacting golgin1.7e-6484Show/hide
Query:  MTTQKQSWEAQQSQ-------MQQRVKKAIGSPAREDQEEELSRSALALFRAKEEEIERKKMEMREKVENRLGRAEEATKRLAEIREELEGMTDPMRKEV
        MTTQKQSWEAQQ Q       +   V   IGSP +EDQEEE+SRSALALFRAKEEEIERKKMEMREKVE RLGRAEEATKRLAEIREELEGMTDPMRKEV
Subjt:  MTTQKQSWEAQQSQ-------MQQRVKKAIGSPAREDQEEELSRSALALFRAKEEEIERKKMEMREKVENRLGRAEEATKRLAEIREELEGMTDPMRKEV

Query:  SLIRKKIDLVNKELKPLGITCQKKEREYKEVLELLNEKNKEKSQLIAKLMELVNESEKLRMKKLEELSNNIDILH
        S IRKKIDLVNKELKPLG+TCQKKEREYKEVL+L NEKN+EKSQL++KLMELVNESEKLRM+KLEELS NIDILH
Subjt:  SLIRKKIDLVNKELKPLGITCQKKEREYKEVLELLNEKNKEKSQLIAKLMELVNESEKLRMKKLEELSNNIDILH

A0A5D3CH78 RAB6-interacting golgin1.7e-6484Show/hide
Query:  MTTQKQSWEAQQSQ-------MQQRVKKAIGSPAREDQEEELSRSALALFRAKEEEIERKKMEMREKVENRLGRAEEATKRLAEIREELEGMTDPMRKEV
        MTTQKQSWEAQQ Q       +   V   IGSP +EDQEEE+SRSALALFRAKEEEIERKKMEMREKVE RLGRAEEATKRLAEIREELEGMTDPMRKEV
Subjt:  MTTQKQSWEAQQSQ-------MQQRVKKAIGSPAREDQEEELSRSALALFRAKEEEIERKKMEMREKVENRLGRAEEATKRLAEIREELEGMTDPMRKEV

Query:  SLIRKKIDLVNKELKPLGITCQKKEREYKEVLELLNEKNKEKSQLIAKLMELVNESEKLRMKKLEELSNNIDILH
        S IRKKIDLVNKELKPLG+TCQKKEREYKEVL+L NEKN+EKSQL++KLMELVNESEKLRM+KLEELS NIDILH
Subjt:  SLIRKKIDLVNKELKPLGITCQKKEREYKEVLELLNEKNKEKSQLIAKLMELVNESEKLRMKKLEELSNNIDILH

A0A6J1EPU7 RAB6-interacting golgin1.9e-76100Show/hide
Query:  MTTQKQSWEAQQSQMQQRVKKAIGSPAREDQEEELSRSALALFRAKEEEIERKKMEMREKVENRLGRAEEATKRLAEIREELEGMTDPMRKEVSLIRKKI
        MTTQKQSWEAQQSQMQQRVKKAIGSPAREDQEEELSRSALALFRAKEEEIERKKMEMREKVENRLGRAEEATKRLAEIREELEGMTDPMRKEVSLIRKKI
Subjt:  MTTQKQSWEAQQSQMQQRVKKAIGSPAREDQEEELSRSALALFRAKEEEIERKKMEMREKVENRLGRAEEATKRLAEIREELEGMTDPMRKEVSLIRKKI

Query:  DLVNKELKPLGITCQKKEREYKEVLELLNEKNKEKSQLIAKLMELVNESEKLRMKKLEELSNNIDILH
        DLVNKELKPLGITCQKKEREYKEVLELLNEKNKEKSQLIAKLMELVNESEKLRMKKLEELSNNIDILH
Subjt:  DLVNKELKPLGITCQKKEREYKEVLELLNEKNKEKSQLIAKLMELVNESEKLRMKKLEELSNNIDILH

A0A6J1I589 RAB6-interacting golgin2.5e-7699.4Show/hide
Query:  MTTQKQSWEAQQSQMQQRVKKAIGSPAREDQEEELSRSALALFRAKEEEIERKKMEMREKVENRLGRAEEATKRLAEIREELEGMTDPMRKEVSLIRKKI
        MTTQKQSWEAQQSQMQQRVKKAIGSPAREDQEEELSRSALALFRAKEEEIERKKMEMREKVENRLGRAEEATKRLAEIREELEGMTDPMRKEVSLIRKKI
Subjt:  MTTQKQSWEAQQSQMQQRVKKAIGSPAREDQEEELSRSALALFRAKEEEIERKKMEMREKVENRLGRAEEATKRLAEIREELEGMTDPMRKEVSLIRKKI

Query:  DLVNKELKPLGITCQKKEREYKEVLELLNEKNKEKSQLIAKLMELVNESEKLRMKKLEELSNNIDILH
        DLVNKELKPLGITCQKKEREYKEVLELLNEKNKEKSQL+AKLMELVNESEKLRMKKLEELSNNIDILH
Subjt:  DLVNKELKPLGITCQKKEREYKEVLELLNEKNKEKSQLIAKLMELVNESEKLRMKKLEELSNNIDILH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G27740.1 Family of unknown function (DUF662)3.5e-4661.99Show/hide
Query:  MTTQKQSWEAQQSQMQQRVKKA-----IGSPAREDQEEELSRSALALFRAKEEEIERKKMEMREKVENRLGRAEEATKRLAEIREELEGMTDPMRKEVSL
        M T +Q  E  QS   QR+K +      GSP  +++EEELS+SA ALF+AKE+EIER+KME++++V+ +LG AEEAT+RLAEIREELE +TDPMRKE+S 
Subjt:  MTTQKQSWEAQQSQMQQRVKKA-----IGSPAREDQEEELSRSALALFRAKEEEIERKKMEMREKVENRLGRAEEATKRLAEIREELEGMTDPMRKEVSL

Query:  IRKKIDLVNKELKPLGITCQKKEREYKEVLELLNEKNKEKSQLIAKLMELVNESEKLRMKKLEELSNNIDI
        IRK++D +N+ELKPLG +CQ+KERE+KE LE  NEKNKEK+  ++KL+ELV ESEKLRM KLEELS +I+I
Subjt:  IRKKIDLVNKELKPLGITCQKKEREYKEVLELLNEKNKEKSQLIAKLMELVNESEKLRMKKLEELSNNIDI

AT2G36410.2 Family of unknown function (DUF662)6.2e-4370.37Show/hide
Query:  QEEELSRSALALFRAKEEEIERKKMEMREKVENRLGRAEEATKRLAEIREELEGMTDPMRKEVSLIRKKIDLVNKELKPLGITCQKKEREYKEVLELLNE
        ++EE++RSAL+ FRAKE+EIE+++ME+RE+++ +LGR E+ TKRL+ IREELE M DPMRKEVS++RKKID VNKELKPLG T QKKEREYKE L+  NE
Subjt:  QEEELSRSALALFRAKEEEIERKKMEMREKVENRLGRAEEATKRLAEIREELEGMTDPMRKEVSLIRKKIDLVNKELKPLGITCQKKEREYKEVLELLNE

Query:  KNKEKSQLIAKLMELVNESEKLRMKKLEELSNNID
        KN+EK QLI KLMELV ESEKLRM KLEELS +I+
Subjt:  KNKEKSQLIAKLMELVNESEKLRMKKLEELSNNID

AT2G36410.3 Family of unknown function (DUF662)2.0e-4168.89Show/hide
Query:  QEEELSRSALALFRAKEEEIERKKMEMREKVENRLGRAEEATKRLAEIREELEGMTDPMRKEVSLIRKKIDLVNKELKPLGITCQKKEREYKEVLELLNE
        ++EE++RSAL+ FRAKE+EIE+++ME+RE+++ +LGR E+ TKRL+ IREELE M DPMRKEVS++RKKID VNKELKPLG T QKK  EYKE L+  NE
Subjt:  QEEELSRSALALFRAKEEEIERKKMEMREKVENRLGRAEEATKRLAEIREELEGMTDPMRKEVSLIRKKIDLVNKELKPLGITCQKKEREYKEVLELLNE

Query:  KNKEKSQLIAKLMELVNESEKLRMKKLEELSNNID
        KN+EK QLI KLMELV ESEKLRM KLEELS +I+
Subjt:  KNKEKSQLIAKLMELVNESEKLRMKKLEELSNNID

AT3G09980.1 Family of unknown function (DUF662)3.2e-4774.64Show/hide
Query:  QEEELSRSALALFRAKEEEIERKKMEMREKVENRLGRAEEATKRLAEIREELEGMTDPMRKEVSLIRKKIDLVNKELKPLGITCQKKEREYKEVLELLNE
        ++EE+SR+AL+ FRAKEEEIE+KKME+RE+V+ +LGR EE TKRLA IREELEG+ DPMRKEV+++RKKID VNKELKPLG T QKKEREYKE LE  NE
Subjt:  QEEELSRSALALFRAKEEEIERKKMEMREKVENRLGRAEEATKRLAEIREELEGMTDPMRKEVSLIRKKIDLVNKELKPLGITCQKKEREYKEVLELLNE

Query:  KNKEKSQLIAKLMELVNESEKLRMKKLEELSNNIDILH
        KN+EK QLI +LMELV ESEK+RMKKLEELS NID +H
Subjt:  KNKEKSQLIAKLMELVNESEKLRMKKLEELSNNIDILH

AT3G52920.2 Family of unknown function (DUF662)3.1e-4262.42Show/hide
Query:  MTTQKQSWEAQQSQMQQRVKKAIGSPAREDQEEELSRSALALFRAKEEEIERKKMEMREKVENRLGRAEEATKRLAEIREELEGMTDPMRKEVSLIRKKI
        MTT  ++     +Q  Q++     S     ++EE++RSAL+ FRAKE+EIE++KME+RE+V+ +LGR EE T+RLA IREELE M DPMRKEV+ +RKKI
Subjt:  MTTQKQSWEAQQSQMQQRVKKAIGSPAREDQEEELSRSALALFRAKEEEIERKKMEMREKVENRLGRAEEATKRLAEIREELEGMTDPMRKEVSLIRKKI

Query:  DLVNKELKPLGITCQKKEREYKEVLELLNEKNKEKSQLIAKLMELVNESEKLRMKKLEELSNNID
        D VNKELKPLG T QKKEREYKE L+  NEKN+EK QLI KLMELV ESEKLR+KKL+ELS +ID
Subjt:  DLVNKELKPLGITCQKKEREYKEVLELLNEKNKEKSQLIAKLMELVNESEKLRMKKLEELSNNID


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGACGCAGAAACAGAGCTGGGAGGCGCAACAATCGCAGATGCAGCAGAGAGTGAAGAAGGCGATTGGGAGTCCGGCGAGGGAGGATCAAGAGGAGGAGCTTTCGCG
ATCGGCGTTGGCTCTGTTCCGCGCGAAGGAAGAGGAGATCGAGAGGAAGAAGATGGAGATGAGGGAGAAGGTGGAGAATCGTCTTGGACGAGCAGAAGAAGCGACGAAGC
GATTGGCGGAGATCCGCGAAGAACTTGAAGGAATGACGGATCCGATGAGGAAGGAAGTTTCGTTGATCCGGAAGAAGATTGATTTGGTGAACAAAGAGTTGAAGCCATTG
GGAATCACCTGCCAAAAGAAGGAGAGAGAATACAAGGAAGTACTAGAGTTATTGAACGAGAAGAACAAGGAGAAATCTCAATTGATAGCCAAACTAATGGAGTTGGTGAA
TGAGAGCGAAAAATTGAGGATGAAGAAGCTGGAGGAGCTCAGCAACAACATTGACATCCTTCATTAA
mRNA sequenceShow/hide mRNA sequence
ATCATCATCATCATCATCATCATCATCATTTGCGAGAGAGAAGGCATGACGACGCAGAAACAGAGCTGGGAGGCGCAACAATCGCAGATGCAGCAGAGAGTGAAGAAGGC
GATTGGGAGTCCGGCGAGGGAGGATCAAGAGGAGGAGCTTTCGCGATCGGCGTTGGCTCTGTTCCGCGCGAAGGAAGAGGAGATCGAGAGGAAGAAGATGGAGATGAGGG
AGAAGGTGGAGAATCGTCTTGGACGAGCAGAAGAAGCGACGAAGCGATTGGCGGAGATCCGCGAAGAACTTGAAGGAATGACGGATCCGATGAGGAAGGAAGTTTCGTTG
ATCCGGAAGAAGATTGATTTGGTGAACAAAGAGTTGAAGCCATTGGGAATCACCTGCCAAAAGAAGGAGAGAGAATACAAGGAAGTACTAGAGTTATTGAACGAGAAGAA
CAAGGAGAAATCTCAATTGATAGCCAAACTAATGGAGTTGGTGAATGAGAGCGAAAAATTGAGGATGAAGAAGCTGGAGGAGCTCAGCAACAACATTGACATCCTTCATT
AAGAAAACAAAAGTGTTTTCCTAAGTTCCTAACCCTAAATAACTCTCCTTCTCATTATATTTTCT
Protein sequenceShow/hide protein sequence
MTTQKQSWEAQQSQMQQRVKKAIGSPAREDQEEELSRSALALFRAKEEEIERKKMEMREKVENRLGRAEEATKRLAEIREELEGMTDPMRKEVSLIRKKIDLVNKELKPL
GITCQKKEREYKEVLELLNEKNKEKSQLIAKLMELVNESEKLRMKKLEELSNNIDILH