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Carg28208 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg28208
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionZinc finger, FYVE/PHD-type
Genome locationCarg_Chr10:10557939..10558881
RNA-Seq ExpressionCarg28208
SyntenyCarg28208
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6590513.1 hypothetical protein SDJN03_15936, partial [Cucurbita argyrosperma subsp. sororia]6.1e-9565.06Show/hide
Query:  MNHPHLPPPPPTKVQTECGNCGSHGRWILHHVRLRGINRRLCTSCVLRLHPTSFCPSCFHFYDPSVSPPHPSNRFKPASSVLPFYAFPLRRPPS------
        MNHPHLPPPPPTKVQTECGNCGSHGRWILHHVRLRGINRRLCTSCVLRLHPTSFCPSCFHFYDPSVSPPHPSNR          ++  +  P S      
Subjt:  MNHPHLPPPPPTKVQTECGNCGSHGRWILHHVRLRGINRRLCTSCVLRLHPTSFCPSCFHFYDPSVSPPHPSNRFKPASSVLPFYAFPLRRPPS------

Query:  -------CCSCAAKNRFCFD------------GVRLSIVAPCRCGEESAGGG-------------------CGQKKPERLLSMLFFFSLERELGVREASM
               C  CA  N   FD              + ++V  C     SA  G                     ++  E L  + F  + ER     EASM
Subjt:  -------CCSCAAKNRFCFD------------GVRLSIVAPCRCGEESAGGG-------------------CGQKKPERLLSMLFFFSLERELGVREASM

Query:  EVSGSGNMETKGQREGIRNLGSMVKTENSLETPAVPTLNTGTTLTQRRESLNGFVRQMSMVKNEAAASLQETAEADRLQSNNTIPSSEKEKSGNCADNGD
        EVSGSGNMETK  +E  RNLGSMVKTENSLETPAVPTLNTGTTLTQRRESLNGFVRQMSMVKNEAAASLQETAEADRLQSNNTIPSSEKEKSGNCADNGD
Subjt:  EVSGSGNMETKGQREGIRNLGSMVKTENSLETPAVPTLNTGTTLTQRRESLNGFVRQMSMVKNEAAASLQETAEADRLQSNNTIPSSEKEKSGNCADNGD

Query:  VENVQNDHKTAL
        VENVQNDHKTAL
Subjt:  VENVQNDHKTAL

KAG7024046.1 hypothetical protein SDJN02_15075, partial [Cucurbita argyrosperma subsp. argyrosperma]3.7e-8460.26Show/hide
Query:  MNHPHLPPPPPTKVQTECGNCGSHGRWILHHVRLRGINRRLCTSCVLRLHPTSFCPSCFHFYDPSVSPPHPSNRFKPASSVLPFYAFPLRRPPS------
        MNHPHLPPPPPTKVQTECGNCGSHGRWILHHVRLRGINRRLCTSCVLRLHPTSFCPSCFHFYDP+VSPPHPSNR          ++  +  P S      
Subjt:  MNHPHLPPPPPTKVQTECGNCGSHGRWILHHVRLRGINRRLCTSCVLRLHPTSFCPSCFHFYDPSVSPPHPSNRFKPASSVLPFYAFPLRRPPS------

Query:  -------CCSCAAKNRFCFD------------GVRLSIVAPCRCGEESAGGG-------------------CGQKKPERLLSMLFFFSLERELGVREASM
               C  CA  N   FD              + ++V  C     SA  G                     ++  E L  + F  + ER     EASM
Subjt:  -------CCSCAAKNRFCFD------------GVRLSIVAPCRCGEESAGGG-------------------CGQKKPERLLSMLFFFSLERELGVREASM

Query:  EVSGSGNMETKGQREGIRNLGSMVKTENSLETPAVPTLNTGTTLTQRRESLNGFVRQMSMVKNEAAASLQETAEADRLQSNNTIPSSEKEKSGNCADNGD
        EVSGSGNMETK  +E  RNLGSMVKTENSLETPAVPTLNTGTTLTQRRESLNGFVRQMSMVKNEAAAS+QETAEADRLQSNN           N ADNGD
Subjt:  EVSGSGNMETKGQREGIRNLGSMVKTENSLETPAVPTLNTGTTLTQRRESLNGFVRQMSMVKNEAAASLQETAEADRLQSNNTIPSSEKEKSGNCADNGD

Query:  VENVQNDHKTAL
        VENVQNDHK AL
Subjt:  VENVQNDHKTAL

KAG7024048.1 hypothetical protein SDJN02_15077, partial [Cucurbita argyrosperma subsp. argyrosperma]4.9e-153100Show/hide
Query:  MNHPHLPPPPPTKVQTECGNCGSHGRWILHHVRLRGINRRLCTSCVLRLHPTSFCPSCFHFYDPSVSPPHPSNRFKPASSVLPFYAFPLRRPPSCCSCAA
        MNHPHLPPPPPTKVQTECGNCGSHGRWILHHVRLRGINRRLCTSCVLRLHPTSFCPSCFHFYDPSVSPPHPSNRFKPASSVLPFYAFPLRRPPSCCSCAA
Subjt:  MNHPHLPPPPPTKVQTECGNCGSHGRWILHHVRLRGINRRLCTSCVLRLHPTSFCPSCFHFYDPSVSPPHPSNRFKPASSVLPFYAFPLRRPPSCCSCAA

Query:  KNRFCFDGVRLSIVAPCRCGEESAGGGCGQKKPERLLSMLFFFSLERELGVREASMEVSGSGNMETKGQREGIRNLGSMVKTENSLETPAVPTLNTGTTL
        KNRFCFDGVRLSIVAPCRCGEESAGGGCGQKKPERLLSMLFFFSLERELGVREASMEVSGSGNMETKGQREGIRNLGSMVKTENSLETPAVPTLNTGTTL
Subjt:  KNRFCFDGVRLSIVAPCRCGEESAGGGCGQKKPERLLSMLFFFSLERELGVREASMEVSGSGNMETKGQREGIRNLGSMVKTENSLETPAVPTLNTGTTL

Query:  TQRRESLNGFVRQMSMVKNEAAASLQETAEADRLQSNNTIPSSEKEKSGNCADNGDVENVQNDHKTAL
        TQRRESLNGFVRQMSMVKNEAAASLQETAEADRLQSNNTIPSSEKEKSGNCADNGDVENVQNDHKTAL
Subjt:  TQRRESLNGFVRQMSMVKNEAAASLQETAEADRLQSNNTIPSSEKEKSGNCADNGDVENVQNDHKTAL

XP_008450515.1 PREDICTED: uncharacterized protein LOC103492096 [Cucumis melo]1.7e-6050Show/hide
Query:  MNHPHLPPP-----PPTKVQTECGNCGSHGRWILHHVRLRGINRRLCTSCVLRLHPTSFCPSCFHFYDPSVSPPHPSNRF--KPASSVLPFYAF--PLRR
        MNHPHLPPP     PPTK+  ECGNCGS GRWILHHVR+RGINRRLCTSCVLRLHP+SFCPSCF FYD SVS PHPSNRF     SS+   +    P   
Subjt:  MNHPHLPPP-----PPTKVQTECGNCGSHGRWILHHVRLRGINRRLCTSCVLRLHPTSFCPSCFHFYDPSVSPPHPSNRF--KPASSVLPFYAF--PLRR

Query:  PPS-----------CCSCAAKNRFCFD------------GVRLSIVAPCRCGEESAGGG-------------------CGQKKPERLLSMLFFFSLEREL
         P            C  CA  N   FD              + ++V  C     S   G                     ++  E L  + F  + ER  
Subjt:  PPS-----------CCSCAAKNRFCFD------------GVRLSIVAPCRCGEESAGGG-------------------CGQKKPERLLSMLFFFSLEREL

Query:  GVREASMEVSGSGNMETKGQREGIRNLGSMVKTENSLETPAVPTLNTGTTLTQRRESLNGFVRQMSMVKNEAAASLQETAE------ADRLQSNNTIP-S
           EAS+EVSGSGN+  K ++E  RNLG  VK EN+ E PAV TLNTGT LTQRRESLNGFVRQMSMVKNE AAS++E+A       A+RLQSNN I   
Subjt:  GVREASMEVSGSGNMETKGQREGIRNLGSMVKTENSLETPAVPTLNTGTTLTQRRESLNGFVRQMSMVKNEAAASLQETAE------ADRLQSNNTIP-S

Query:  SEKEKSGNCADNGDVENVQNDH
        +EKEK+    +NG+VE+V+NDH
Subjt:  SEKEKSGNCADNGDVENVQNDH

XP_038878318.1 uncharacterized protein LOC120070585 [Benincasa hispida]1.2e-6352.04Show/hide
Query:  MNHPHLPPP-----PPTKVQTECGNCGSHGRWILHHVRLRGINRRLCTSCVLRLHPTSFCPSCFHFYDPSVSPPHPSNRF--KPASSVLPFYAF--PLRR
        MNHPHLPPP     PPTK+  ECGNCGS GRWILHHVR+RGINRRLCTSCVLRLHP+SFCPSCF FYD SVS PHP NRF     SS+   +    P   
Subjt:  MNHPHLPPP-----PPTKVQTECGNCGSHGRWILHHVRLRGINRRLCTSCVLRLHPTSFCPSCFHFYDPSVSPPHPSNRF--KPASSVLPFYAF--PLRR

Query:  PPS----------CCSCAAKNRFCFD------------GVRLSIVAPCRCGEESAGGG-------------------CGQKKPERLLSMLFFFSLERELG
         P           C  CA  N   FD              + ++V  C     SA  G                     ++  E L  + F  + ER   
Subjt:  PPS----------CCSCAAKNRFCFD------------GVRLSIVAPCRCGEESAGGG-------------------CGQKKPERLLSMLFFFSLERELG

Query:  VREASMEVSGSGNMETKGQREGIRNLGSMVKTENSLETPAVPTL-NTGTTLTQRRESLNGFVRQMSMVKNEAAASLQE-----TAEADRLQSNNTIPSSE
          EASMEVSGSGN+  K + E  RNLGSMVK EN  E PAV TL NTG+ LTQRRESLNGFVRQMSMVKNE AAS++E       EADRLQSNN I  +E
Subjt:  VREASMEVSGSGNMETKGQREGIRNLGSMVKTENSLETPAVPTL-NTGTTLTQRRESLNGFVRQMSMVKNEAAASLQE-----TAEADRLQSNNTIPSSE

Query:  KEKSGNCADNGDVENVQND
        KEKSGN  +NG+VE+VQ+D
Subjt:  KEKSGNCADNGDVENVQND

TrEMBL top hitse value%identityAlignment
A0A0A0LYS3 Uncharacterized protein5.8e-5949.07Show/hide
Query:  MNHPHLPPP-----PPTKVQTECGNCGSHGRWILHHVRLRGINRRLCTSCVLRLHPTSFCPSCFHFYDPSVSPPHPSNRF--KPASSVLPFYAF--PLRR
        MNHP LPPP     PPTK+  ECGNCGS GRWILHHVR+RGINRRLCTSCVLRLHP+SFCPSCF FYD SVS PHPSNRF     SS+   +    P   
Subjt:  MNHPHLPPP-----PPTKVQTECGNCGSHGRWILHHVRLRGINRRLCTSCVLRLHPTSFCPSCFHFYDPSVSPPHPSNRF--KPASSVLPFYAF--PLRR

Query:  PPS-----------CCSCAAKNRFCFDGVRLSIVAP----------CRCGEESAGGGCG---------------------QKKPERLLSMLFFFSLEREL
         P            C  CA  N   FD      ++P            C  + A                          ++  E L  + F  + ER  
Subjt:  PPS-----------CCSCAAKNRFCFDGVRLSIVAP----------CRCGEESAGGGCG---------------------QKKPERLLSMLFFFSLEREL

Query:  GVREASMEVSGSGNMETKGQREGIRNLGSMVKTENSLETPAVPTLNTGTTLTQRRESLNGFVRQMSMVKNEAAASLQETAE------ADRLQSNNTIP-S
           EAS+EVSGSGN+  K ++E  R LG  VK EN+ E PAV TLNTG+ LTQRRESLNGFVRQMSMVKNEAAAS++E+A       A+RLQSNN I   
Subjt:  GVREASMEVSGSGNMETKGQREGIRNLGSMVKTENSLETPAVPTLNTGTTLTQRRESLNGFVRQMSMVKNEAAASLQETAE------ADRLQSNNTIP-S

Query:  SEKEKSGNCADNGDVENVQNDH
        +EKEK+    +NG+VE+V+NDH
Subjt:  SEKEKSGNCADNGDVENVQNDH

A0A1S3BQ20 uncharacterized protein LOC1034920968.1e-6150Show/hide
Query:  MNHPHLPPP-----PPTKVQTECGNCGSHGRWILHHVRLRGINRRLCTSCVLRLHPTSFCPSCFHFYDPSVSPPHPSNRF--KPASSVLPFYAF--PLRR
        MNHPHLPPP     PPTK+  ECGNCGS GRWILHHVR+RGINRRLCTSCVLRLHP+SFCPSCF FYD SVS PHPSNRF     SS+   +    P   
Subjt:  MNHPHLPPP-----PPTKVQTECGNCGSHGRWILHHVRLRGINRRLCTSCVLRLHPTSFCPSCFHFYDPSVSPPHPSNRF--KPASSVLPFYAF--PLRR

Query:  PPS-----------CCSCAAKNRFCFD------------GVRLSIVAPCRCGEESAGGG-------------------CGQKKPERLLSMLFFFSLEREL
         P            C  CA  N   FD              + ++V  C     S   G                     ++  E L  + F  + ER  
Subjt:  PPS-----------CCSCAAKNRFCFD------------GVRLSIVAPCRCGEESAGGG-------------------CGQKKPERLLSMLFFFSLEREL

Query:  GVREASMEVSGSGNMETKGQREGIRNLGSMVKTENSLETPAVPTLNTGTTLTQRRESLNGFVRQMSMVKNEAAASLQETAE------ADRLQSNNTIP-S
           EAS+EVSGSGN+  K ++E  RNLG  VK EN+ E PAV TLNTGT LTQRRESLNGFVRQMSMVKNE AAS++E+A       A+RLQSNN I   
Subjt:  GVREASMEVSGSGNMETKGQREGIRNLGSMVKTENSLETPAVPTLNTGTTLTQRRESLNGFVRQMSMVKNEAAASLQETAE------ADRLQSNNTIP-S

Query:  SEKEKSGNCADNGDVENVQNDH
        +EKEK+    +NG+VE+V+NDH
Subjt:  SEKEKSGNCADNGDVENVQNDH

A0A5D3CEV9 Putative DNA binding protein8.1e-6150Show/hide
Query:  MNHPHLPPP-----PPTKVQTECGNCGSHGRWILHHVRLRGINRRLCTSCVLRLHPTSFCPSCFHFYDPSVSPPHPSNRF--KPASSVLPFYAF--PLRR
        MNHPHLPPP     PPTK+  ECGNCGS GRWILHHVR+RGINRRLCTSCVLRLHP+SFCPSCF FYD SVS PHPSNRF     SS+   +    P   
Subjt:  MNHPHLPPP-----PPTKVQTECGNCGSHGRWILHHVRLRGINRRLCTSCVLRLHPTSFCPSCFHFYDPSVSPPHPSNRF--KPASSVLPFYAF--PLRR

Query:  PPS-----------CCSCAAKNRFCFD------------GVRLSIVAPCRCGEESAGGG-------------------CGQKKPERLLSMLFFFSLEREL
         P            C  CA  N   FD              + ++V  C     S   G                     ++  E L  + F  + ER  
Subjt:  PPS-----------CCSCAAKNRFCFD------------GVRLSIVAPCRCGEESAGGG-------------------CGQKKPERLLSMLFFFSLEREL

Query:  GVREASMEVSGSGNMETKGQREGIRNLGSMVKTENSLETPAVPTLNTGTTLTQRRESLNGFVRQMSMVKNEAAASLQETAE------ADRLQSNNTIP-S
           EAS+EVSGSGN+  K ++E  RNLG  VK EN+ E PAV TLNTGT LTQRRESLNGFVRQMSMVKNE AAS++E+A       A+RLQSNN I   
Subjt:  GVREASMEVSGSGNMETKGQREGIRNLGSMVKTENSLETPAVPTLNTGTTLTQRRESLNGFVRQMSMVKNEAAASLQETAE------ADRLQSNNTIP-S

Query:  SEKEKSGNCADNGDVENVQNDH
        +EKEK+    +NG+VE+V+NDH
Subjt:  SEKEKSGNCADNGDVENVQNDH

A0A6J1DQC5 uncharacterized protein LOC1110225997.1e-5747.29Show/hide
Query:  MNHPHLPPP--------------PPTKVQTECGNCGSHGRWILHHVRLRGINRRLCTSCVLRLHPTSFCPSCFHFYDPSVSP-PHPSNRFK--PASSVLP
        MNHP  PPP              PPTK+ +ECGNCGS  RW+LHHVRLRG+NRRLCTSCVLRLHPTSFCPSCF FYDPS SP P PSNRF     SS+  
Subjt:  MNHPHLPPP--------------PPTKVQTECGNCGSHGRWILHHVRLRGINRRLCTSCVLRLHPTSFCPSCFHFYDPSVSP-PHPSNRFK--PASSVLP

Query:  FYA---------FPLRRPPS---CCSCAAKNRFCFD------------GVRLSIVAPCRCGEESAGGG-------------------CGQKKPERLLSML
         +           PL    S   C  CA  N   FD              ++++V  C     SA  G                     ++  E L  + 
Subjt:  FYA---------FPLRRPPS---CCSCAAKNRFCFD------------GVRLSIVAPCRCGEESAGGG-------------------CGQKKPERLLSML

Query:  FFFSLERELGVREASMEVSGSGNMETKGQREGIRNLGSMVKTENSLETPAVPTLNTGTTLTQRRESLNGFVRQMSMVKNEAAASLQE-----TAEADRLQ
        F  + ER     EAS+EVSGSG++  K ++E  RNLGSMVK ENS E  AV   NT + LT RRESLNGFVRQMSMVKN+ AASL+E       EADRLQ
Subjt:  FFFSLERELGVREASMEVSGSGNMETKGQREGIRNLGSMVKTENSLETPAVPTLNTGTTLTQRRESLNGFVRQMSMVKNEAAASLQE-----TAEADRLQ

Query:  SNNTIPSSEKEKSGNCAD----NGDVENVQND
        S+N    +EKEKSGN  D    NG+V+ V ND
Subjt:  SNNTIPSSEKEKSGNCAD----NGDVENVQND

A0A6J1I0U4 uncharacterized protein LOC1114679803.2e-4177.04Show/hide
Query:  ERLLSMLFFFSLERELGVREASMEVSGSGNMETKGQREGIRNLGSMVKTENSLETPAVPTLNTGTTLTQRRESLNGFVRQMSMVKNEAAASLQETAEADR
        E L  + F  + ER     EASMEVSGSGNME K  +E  RNLGSMVKTENSLE PAVPTLNT T LTQRRESLNGFVRQMSMVKNEAAAS+QETAEADR
Subjt:  ERLLSMLFFFSLERELGVREASMEVSGSGNMETKGQREGIRNLGSMVKTENSLETPAVPTLNTGTTLTQRRESLNGFVRQMSMVKNEAAASLQETAEADR

Query:  LQSNNTIPSSEKEKSGNCADNGDVENVQNDHKTAL
        LQ NN I SSEKEKSGN ADN D ENVQNDHK AL
Subjt:  LQSNNTIPSSEKEKSGNCADNGDVENVQNDHKTAL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G09520.1 LOCATED IN: chloroplast4.5e-1155.77Show/hide
Query:  CGNCGSHGRWILHHVRLRGINRRLCTSCVLRLHPTSFCPSCFHFYDPSVSPP
        C +CGS   W++H VRLR   R  CT C+LR HP SFCP CF  YD   SPP
Subjt:  CGNCGSHGRWILHHVRLRGINRRLCTSCVLRLHPTSFCPSCFHFYDPSVSPP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATCACCCTCATCTTCCTCCTCCTCCTCCAACCAAAGTGCAGACGGAGTGTGGGAATTGCGGCTCTCACGGTCGGTGGATTCTTCATCATGTTCGTTTACGAGGTAT
TAATCGTCGTCTTTGCACCTCCTGCGTGCTTCGCCTTCATCCCACTTCCTTTTGCCCTTCTTGCTTTCACTTCTATGACCCTTCTGTGTCTCCTCCTCATCCCTCCAATC
GCTTTAAACCTGCCTCAAGTGTTCTTCCATTCTACGCATTCCCACTGCGAAGACCGCCGTCGTGTTGCTCATGTGCGGCTAAGAATCGCTTCTGCTTCGATGGAGTAAGG
CTGTCGATTGTTGCCCCGTGCCGATGCGGAGAGGAAAGTGCGGGAGGTGGCTGTGGCCAGAAGAAGCCAGAGAGGCTCTTGAGCATGTTGTTTTTCTTTTCGCTAGAGAG
AGAGCTAGGCGTAAGAGAGGCGTCCATGGAGGTTTCGGGTTCCGGGAATATGGAGACGAAAGGACAAAGAGAGGGGATTAGGAATCTGGGTTCCATGGTGAAAACTGAGA
ATTCCCTTGAGACCCCTGCAGTGCCAACTTTGAACACTGGTACCACTTTAACTCAGAGGAGGGAGAGCTTGAATGGGTTCGTGAGACAGATGTCTATGGTGAAGAACGAG
GCAGCTGCTTCCTTGCAGGAAACTGCTGAGGCTGACCGTTTACAGAGTAACAACACCATTCCTTCAAGTGAGAAGGAGAAGTCAGGAAATTGTGCTGATAATGGGGATGT
TGAGAATGTGCAAAATGATCACAAAACAGCCCTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAATCACCCTCATCTTCCTCCTCCTCCTCCAACCAAAGTGCAGACGGAGTGTGGGAATTGCGGCTCTCACGGTCGGTGGATTCTTCATCATGTTCGTTTACGAGGTAT
TAATCGTCGTCTTTGCACCTCCTGCGTGCTTCGCCTTCATCCCACTTCCTTTTGCCCTTCTTGCTTTCACTTCTATGACCCTTCTGTGTCTCCTCCTCATCCCTCCAATC
GCTTTAAACCTGCCTCAAGTGTTCTTCCATTCTACGCATTCCCACTGCGAAGACCGCCGTCGTGTTGCTCATGTGCGGCTAAGAATCGCTTCTGCTTCGATGGAGTAAGG
CTGTCGATTGTTGCCCCGTGCCGATGCGGAGAGGAAAGTGCGGGAGGTGGCTGTGGCCAGAAGAAGCCAGAGAGGCTCTTGAGCATGTTGTTTTTCTTTTCGCTAGAGAG
AGAGCTAGGCGTAAGAGAGGCGTCCATGGAGGTTTCGGGTTCCGGGAATATGGAGACGAAAGGACAAAGAGAGGGGATTAGGAATCTGGGTTCCATGGTGAAAACTGAGA
ATTCCCTTGAGACCCCTGCAGTGCCAACTTTGAACACTGGTACCACTTTAACTCAGAGGAGGGAGAGCTTGAATGGGTTCGTGAGACAGATGTCTATGGTGAAGAACGAG
GCAGCTGCTTCCTTGCAGGAAACTGCTGAGGCTGACCGTTTACAGAGTAACAACACCATTCCTTCAAGTGAGAAGGAGAAGTCAGGAAATTGTGCTGATAATGGGGATGT
TGAGAATGTGCAAAATGATCACAAAACAGCCCTTTGA
Protein sequenceShow/hide protein sequence
MNHPHLPPPPPTKVQTECGNCGSHGRWILHHVRLRGINRRLCTSCVLRLHPTSFCPSCFHFYDPSVSPPHPSNRFKPASSVLPFYAFPLRRPPSCCSCAAKNRFCFDGVR
LSIVAPCRCGEESAGGGCGQKKPERLLSMLFFFSLERELGVREASMEVSGSGNMETKGQREGIRNLGSMVKTENSLETPAVPTLNTGTTLTQRRESLNGFVRQMSMVKNE
AAASLQETAEADRLQSNNTIPSSEKEKSGNCADNGDVENVQNDHKTAL