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Carg28218 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg28218
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionLYR motif-containing protein 4
Genome locationCarg_Chr11:970410..970682
RNA-Seq ExpressionCarg28218
SyntenyCarg28218
Gene Ontology termsNA
InterPro domainsIPR008011 - Complex 1 LYR protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008453246.1 PREDICTED: LYR motif-containing protein 4 [Cucumis melo]7.6e-3484.44Show/hide
Query:  MATPTRSESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSIVVAYADGKAQLEVAKRQSTVYSLFSPKVKSIMEAHHTN
        MA PTRSE+LSLLRSL+RT+R FCDYNIREYAKRR VDGFRHNRNLSDPSSI  AYADGKAQLEVAKRQS +YSL++PKVKSIMEAH  N
Subjt:  MATPTRSESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSIVVAYADGKAQLEVAKRQSTVYSLFSPKVKSIMEAHHTN

XP_011660289.1 LYR motif-containing protein 4 [Cucumis sativus]5.9e-3486.67Show/hide
Query:  MATPTRSESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSIVVAYADGKAQLEVAKRQSTVYSLFSPKVKSIMEAHHTN
        MA+PTRSE+LSLLRSL+RTARHF DYNIREYAKRRAVDGFRHNRNLSDP SI  AYADGKAQLEVAKRQS VYSL+ PKVKSIMEAH  N
Subjt:  MATPTRSESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSIVVAYADGKAQLEVAKRQSTVYSLFSPKVKSIMEAHHTN

XP_022134602.1 LYR motif-containing protein 4-like [Momordica charantia]9.0e-3585.56Show/hide
Query:  MATPTRSESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSIVVAYADGKAQLEVAKRQSTVYSLFSPKVKSIMEAHHTN
        MATPTR+E+LSLLRSLLRTARHFCDYN+REYAKRRAVDGFRHNRNLSDPSSI  AYADG+AQLEVA+RQSTVYS F+PKVKSIM+ H  N
Subjt:  MATPTRSESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSIVVAYADGKAQLEVAKRQSTVYSLFSPKVKSIMEAHHTN

XP_022932898.1 LYR motif-containing protein 4 [Cucurbita moschata]3.8e-41100Show/hide
Query:  MATPTRSESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSIVVAYADGKAQLEVAKRQSTVYSLFSPKVKSIMEAHHTN
        MATPTRSESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSIVVAYADGKAQLEVAKRQSTVYSLFSPKVKSIMEAHHTN
Subjt:  MATPTRSESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSIVVAYADGKAQLEVAKRQSTVYSLFSPKVKSIMEAHHTN

XP_038879775.1 LYR motif-containing protein 4-like [Benincasa hispida]1.5e-3486.67Show/hide
Query:  MATPTRSESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSIVVAYADGKAQLEVAKRQSTVYSLFSPKVKSIMEAHHTN
        M  PTRSE+LSLLRS LRTARHFCDYNIREYAKRRAVDGFRHNRNLSDP SI  AYADGKAQLEVAKRQS VYSL++PKVKSIME H TN
Subjt:  MATPTRSESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSIVVAYADGKAQLEVAKRQSTVYSLFSPKVKSIMEAHHTN

TrEMBL top hitse value%identityAlignment
A0A0A0LPH2 Uncharacterized protein2.8e-3486.67Show/hide
Query:  MATPTRSESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSIVVAYADGKAQLEVAKRQSTVYSLFSPKVKSIMEAHHTN
        MA+PTRSE+LSLLRSL+RTARHF DYNIREYAKRRAVDGFRHNRNLSDP SI  AYADGKAQLEVAKRQS VYSL+ PKVKSIMEAH  N
Subjt:  MATPTRSESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSIVVAYADGKAQLEVAKRQSTVYSLFSPKVKSIMEAHHTN

A0A5A7UTC8 LYR motif-containing protein 43.7e-3484.44Show/hide
Query:  MATPTRSESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSIVVAYADGKAQLEVAKRQSTVYSLFSPKVKSIMEAHHTN
        MA PTRSE+LSLLRSL+RT+R FCDYNIREYAKRR VDGFRHNRNLSDPSSI  AYADGKAQLEVAKRQS +YSL++PKVKSIMEAH  N
Subjt:  MATPTRSESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSIVVAYADGKAQLEVAKRQSTVYSLFSPKVKSIMEAHHTN

A0A6J1C021 LYR motif-containing protein 4-like4.4e-3585.56Show/hide
Query:  MATPTRSESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSIVVAYADGKAQLEVAKRQSTVYSLFSPKVKSIMEAHHTN
        MATPTR+E+LSLLRSLLRTARHFCDYN+REYAKRRAVDGFRHNRNLSDPSSI  AYADG+AQLEVA+RQSTVYS F+PKVKSIM+ H  N
Subjt:  MATPTRSESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSIVVAYADGKAQLEVAKRQSTVYSLFSPKVKSIMEAHHTN

A0A6J1F322 LYR motif-containing protein 41.8e-41100Show/hide
Query:  MATPTRSESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSIVVAYADGKAQLEVAKRQSTVYSLFSPKVKSIMEAHHTN
        MATPTRSESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSIVVAYADGKAQLEVAKRQSTVYSLFSPKVKSIMEAHHTN
Subjt:  MATPTRSESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSIVVAYADGKAQLEVAKRQSTVYSLFSPKVKSIMEAHHTN

A0A6J1IC29 LYR motif-containing protein 41.8e-41100Show/hide
Query:  MATPTRSESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSIVVAYADGKAQLEVAKRQSTVYSLFSPKVKSIMEAHHTN
        MATPTRSESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSIVVAYADGKAQLEVAKRQSTVYSLFSPKVKSIMEAHHTN
Subjt:  MATPTRSESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSIVVAYADGKAQLEVAKRQSTVYSLFSPKVKSIMEAHHTN

SwissProt top hitse value%identityAlignment
B8JLQ0 LYR motif-containing protein 44.9e-0732.95Show/hide
Query:  MATPTRSESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSIVVAYADGKAQLEVAKRQSTVYSLFSPKVKSIMEAHH
        MA+ +R++ +SL R L++ ++ F  YN R YA RR  DGFR N ++ +P ++ +     +  L V KRQ ++  L+S +   + +  H
Subjt:  MATPTRSESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSIVVAYADGKAQLEVAKRQSTVYSLFSPKVKSIMEAHH

O46098 Protein bcn929.2e-0638.36Show/hide
Query:  TRSESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSIVVAYADGKAQLEVAKRQSTVYSLFS
        TR ++++L R+LLR +     YN R YA R+  D FR NR+  D + I    A+G+  LE+ +RQ  +  L+S
Subjt:  TRSESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSIVVAYADGKAQLEVAKRQSTVYSLFS

Q54FN9 LYR motif-containing protein 47.0e-0640.28Show/hide
Query:  RSESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSIVVAYADGKAQLEVAKRQSTVYSLFS
        +S  L L RSL+R ++ F  YN REY+ RR   GFR N+N  D +       D    LE+ KRQ+ + S++S
Subjt:  RSESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSIVVAYADGKAQLEVAKRQSTVYSLFS

Q6Q560 Protein ISD112.4e-0635.14Show/hide
Query:  PTRSESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSIVVAYADGKAQLEVAKRQSTVYSLFS
        PTR + LSL +  ++ A  F +YN REY   +    FR N N  DP  ++  + + K  L V KRQS +  +++
Subjt:  PTRSESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSIVVAYADGKAQLEVAKRQSTVYSLFS

Q8K215 LYR motif-containing protein 44.0e-0940.26Show/hide
Query:  MATPTRSESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSIVVAYADGKAQLEVAKRQSTVYSLFS
        MA  +R++ L L R+++R ++HF  YN R YA RR  D FR N+N+ DP  I       K  LE+ +RQ  +  L+S
Subjt:  MATPTRSESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSIVVAYADGKAQLEVAKRQSTVYSLFS

Arabidopsis top hitse value%identityAlignment
AT5G61220.1 LYR family of Fe/S cluster biogenesis protein3.9e-2060.76Show/hide
Query:  SESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSIVVAYADGKAQLEVAKRQSTVYSLFSPKVKSIME
        SE LSL R+LLR  R F DYNIREY+KRR +DGFR N+NL+DPS +  AYA+ K QL VA+R   VY  + PK K+IME
Subjt:  SESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSIVVAYADGKAQLEVAKRQSTVYSLFSPKVKSIME


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGACTCCAACGAGATCCGAATCCCTTTCGCTTCTTCGCTCTCTGCTCCGTACAGCCCGTCACTTCTGTGATTACAACATCAGAGAGTACGCCAAACGACGCGCCGT
TGACGGCTTCCGCCATAACCGGAACCTTTCCGATCCTTCGTCCATCGTCGTCGCCTACGCCGACGGCAAGGCTCAGCTTGAAGTTGCCAAAAGACAGTCCACCGTCTACT
CCCTCTTCTCGCCCAAGGTCAAGAGCATCATGGAGGCTCATCACACGAACTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGACTCCAACGAGATCCGAATCCCTTTCGCTTCTTCGCTCTCTGCTCCGTACAGCCCGTCACTTCTGTGATTACAACATCAGAGAGTACGCCAAACGACGCGCCGT
TGACGGCTTCCGCCATAACCGGAACCTTTCCGATCCTTCGTCCATCGTCGTCGCCTACGCCGACGGCAAGGCTCAGCTTGAAGTTGCCAAAAGACAGTCCACCGTCTACT
CCCTCTTCTCGCCCAAGGTCAAGAGCATCATGGAGGCTCATCACACGAACTGA
Protein sequenceShow/hide protein sequence
MATPTRSESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSIVVAYADGKAQLEVAKRQSTVYSLFSPKVKSIMEAHHTN