CuGenDBv2

Gene ID	Carg28241
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	ATP synthase subunit beta, chloroplastic
Genome location	Carg_Chr13:5035478..5035767
RNA-Seq Expression	Carg28241
Synteny	Carg28241
Gene Ontology terms	GO:0015986 - ATP synthesis coupled proton transport (biological process) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0045261 - proton-transporting ATP synthase complex, catalytic core F(1) (cellular component) GO:0005524 - ATP binding (molecular function) GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism (molecular function) GO:0046961 - proton-transporting ATPase activity, rotational mechanism (molecular function)
InterPro domains	IPR027417 - P-loop containing nucleoside triphosphate hydrolase

Homology

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GenBank top hits

e value

%identity

Alignment

AEH26951.1 ATP synthase beta subunit, partial [Goetzea elegans]

3.5e-21

76.32

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Query:  GASLVLIFKVLGEPIENLGPVDTRTRSPIHRSAPAFIQYN---SILERGMKVVDLLAPYRRGVKIGLLVGAGVSST
        GA+L  IF VLGEPI+NLGPVDTRTRSPIHRSAPAFIQ +   SI E G+KVVDLLAPYRRG KIGL  GAGV  T
Subjt:  GASLVLIFKVLGEPIENLGPVDTRTRSPIHRSAPAFIQYN---SILERGMKVVDLLAPYRRGVKIGLLVGAGVSST

CAB89703.1 ATP synthase beta subunit [Zygogynum pauciflorum]

4.5e-21

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Query:  GASLVLIFKVLGEPIENLGPVDTRTRSPIHRSAPAFIQYN---SILERGMKVVDLLAPYRRGVKIGLLVGAGVSST
        GA+L  IF VLGEP++NLGPVDTRTRSPIHRSAPAFIQ +   SI E G+KVVDLLAPYRRG KIGL  GAGV  T
Subjt:  GASLVLIFKVLGEPIENLGPVDTRTRSPIHRSAPAFIQYN---SILERGMKVVDLLAPYRRGVKIGLLVGAGVSST

THU42950.1 hypothetical protein C4D60_Mb00t04240 [Musa balbisiana]

1.6e-21

64.84

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Query:  GASLVLIFKVLGEPIENLGPVDTRTRSPIHRSAPAFIQYN---SILERGMKVVDLLAPYRRGVKIGLLVGAGVSSTHYRIDQSTTLPKLMK
        GA+L  IF VLGEP++NLGPVDT T SPIHR APAFIQ     SI E G+K VDLLAPYRRG KIGL  GAGV  T   ++   TLPKLM+
Subjt:  GASLVLIFKVLGEPIENLGPVDTRTRSPIHRSAPAFIQYN---SILERGMKVVDLLAPYRRGVKIGLLVGAGVSSTHYRIDQSTTLPKLMK

VVW89792.1 unnamed protein product, partial [Nymphaea colorata]

2.0e-21

62.11

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Query:  GASLVLIFKVLGEPIENLGPVDTRTRSPIHRSAPAFIQYN---SILERGMKVVDLLAPYRRGVKIGLLVGAGVSSTHYRIDQSTTLPKLMKVYPY
        GA+L  IF VLGEP++NLGPVDTRT SPIHR APAF Q +   SI E G+KVVDLLAPYRRG KIGL  GAGV  T   ++    + K   VYPY
Subjt:  GASLVLIFKVLGEPIENLGPVDTRTRSPIHRSAPAFIQYN---SILERGMKVVDLLAPYRRGVKIGLLVGAGVSSTHYRIDQSTTLPKLMKVYPY

VVW90775.1 unnamed protein product, partial [Nymphaea colorata]

2.0e-21

62.11

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Query:  GASLVLIFKVLGEPIENLGPVDTRTRSPIHRSAPAFIQYN---SILERGMKVVDLLAPYRRGVKIGLLVGAGVSSTHYRIDQSTTLPKLMKVYPY
        GA+L  IF VLGEP++NLGPVDTRT SPIHR APAF Q +   SI E G+KVVDLLAPYRRG KIGL  GAGV  T   ++    + K   VYPY
Subjt:  GASLVLIFKVLGEPIENLGPVDTRTRSPIHRSAPAFIQYN---SILERGMKVVDLLAPYRRGVKIGLLVGAGVSSTHYRIDQSTTLPKLMKVYPY

TrEMBL top hits

e value

%identity

Alignment

A0A4S8I528 ATP-synt_ab domain-containing protein

7.6e-22

64.84

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Query:  GASLVLIFKVLGEPIENLGPVDTRTRSPIHRSAPAFIQYN---SILERGMKVVDLLAPYRRGVKIGLLVGAGVSSTHYRIDQSTTLPKLMK
        GA+L  IF VLGEP++NLGPVDT T SPIHR APAFIQ     SI E G+K VDLLAPYRRG KIGL  GAGV  T   ++   TLPKLM+
Subjt:  GASLVLIFKVLGEPIENLGPVDTRTRSPIHRSAPAFIQYN---SILERGMKVVDLLAPYRRGVKIGLLVGAGVSSTHYRIDQSTTLPKLMK

A0A5K1HQE5 Uncharacterized protein (Fragment)

9.9e-22

62.11

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Query:  GASLVLIFKVLGEPIENLGPVDTRTRSPIHRSAPAFIQYN---SILERGMKVVDLLAPYRRGVKIGLLVGAGVSSTHYRIDQSTTLPKLMKVYPY
        GA+L  IF VLGEP++NLGPVDTRT SPIHR APAF Q +   SI E G+KVVDLLAPYRRG KIGL  GAGV  T   ++    + K   VYPY
Subjt:  GASLVLIFKVLGEPIENLGPVDTRTRSPIHRSAPAFIQYN---SILERGMKVVDLLAPYRRGVKIGLLVGAGVSSTHYRIDQSTTLPKLMKVYPY

A0A5K1HT13 ATP-synt_ab domain-containing protein (Fragment)

9.9e-22

62.11

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Query:  GASLVLIFKVLGEPIENLGPVDTRTRSPIHRSAPAFIQYN---SILERGMKVVDLLAPYRRGVKIGLLVGAGVSSTHYRIDQSTTLPKLMKVYPY
        GA+L  IF VLGEP++NLGPVDTRT SPIHR APAF Q +   SI E G+KVVDLLAPYRRG KIGL  GAGV  T   ++    + K   VYPY
Subjt:  GASLVLIFKVLGEPIENLGPVDTRTRSPIHRSAPAFIQYN---SILERGMKVVDLLAPYRRGVKIGLLVGAGVSSTHYRIDQSTTLPKLMKVYPY

I3NTC7 ATP synthase subunit beta (Fragment)

1.7e-21

76.32

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Query:  GASLVLIFKVLGEPIENLGPVDTRTRSPIHRSAPAFIQYN---SILERGMKVVDLLAPYRRGVKIGLLVGAGVSST
        GA+L  IF VLGEPI+NLGPVDTRTRSPIHRSAPAFIQ +   SI E G+KVVDLLAPYRRG KIGL  GAGV  T
Subjt:  GASLVLIFKVLGEPIENLGPVDTRTRSPIHRSAPAFIQYN---SILERGMKVVDLLAPYRRGVKIGLLVGAGVSST

R4QSK3 ATP synthase subunit beta (Fragment)

2.2e-21

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Query:  GASLVLIFKVLGEPIENLGPVDTRTRSPIHRSAPAFIQYN---SILERGMKVVDLLAPYRRGVKIGLLVGAGVSST
        GA+L  IF VLGEP++NLGPVDTRTRSPIHRSAPAFIQ +   SI E G+KVVDLLAPYRRG KIGL  GAGV  T
Subjt:  GASLVLIFKVLGEPIENLGPVDTRTRSPIHRSAPAFIQYN---SILERGMKVVDLLAPYRRGVKIGLLVGAGVSST

SwissProt top hits

e value

%identity

Alignment

A8SEB0 ATP synthase subunit beta, chloroplastic

1.3e-23

73.68

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Query:  GASLVLIFKVLGEPIENLGPVDTRTRSPIHRSAPAFIQYN---SILERGMKVVDLLAPYRRGVKIGLLVGAGVSST
        GA+L  IF VLGEP++NLGPVDTRT+SPIHRSAPAFIQ +   SI E G+KVVDLLAPYRRG KIGL  GAGV  T
Subjt:  GASLVLIFKVLGEPIENLGPVDTRTRSPIHRSAPAFIQYN---SILERGMKVVDLLAPYRRGVKIGLLVGAGVSST

P05037 ATP synthase subunit beta, chloroplastic

2.3e-23

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Query:  GASLVLIFKVLGEPIENLGPVDTRTRSPIHRSAPAFIQYN---SILERGMKVVDLLAPYRRGVKIGLLVGAGVSST
        GA+L  IF VLGEPI+NLGPVDTRT SPIHRSAPAFIQ +   SI E G+KVVDLLAPYRRG KIGL  GAGV  T
Subjt:  GASLVLIFKVLGEPIENLGPVDTRTRSPIHRSAPAFIQYN---SILERGMKVVDLLAPYRRGVKIGLLVGAGVSST

Q09X10 ATP synthase subunit beta, chloroplastic

2.3e-23

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Query:  GASLVLIFKVLGEPIENLGPVDTRTRSPIHRSAPAFIQYN---SILERGMKVVDLLAPYRRGVKIGLLVGAGVSST
        GA+L  IF VLGEPI+NLGPVDTRT SPIHRSAPAFIQ +   SI E G+KVVDLLAPYRRG KIGL  GAGV  T
Subjt:  GASLVLIFKVLGEPIENLGPVDTRTRSPIHRSAPAFIQYN---SILERGMKVVDLLAPYRRGVKIGLLVGAGVSST

Q4VZI5 ATP synthase subunit beta, chloroplastic

2.3e-23

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Query:  GASLVLIFKVLGEPIENLGPVDTRTRSPIHRSAPAFIQYN---SILERGMKVVDLLAPYRRGVKIGLLVGAGVSST
        GA+L  IF VLGEPI+NLGPVDTRT SPIHRSAPAFIQ +   SI E G+KVVDLLAPYRRG KIGL  GAGV  T
Subjt:  GASLVLIFKVLGEPIENLGPVDTRTRSPIHRSAPAFIQYN---SILERGMKVVDLLAPYRRGVKIGLLVGAGVSST

Q85V26 ATP synthase subunit beta, chloroplastic

2.3e-23

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Query:  GASLVLIFKVLGEPIENLGPVDTRTRSPIHRSAPAFIQYN---SILERGMKVVDLLAPYRRGVKIGLLVGAGVSST
        GA+L  IF VLGEPI+NLGPVDTRT SPIHRSAPAFIQ +   SI E G+KVVDLLAPYRRG KIGL  GAGV  T
Subjt:  GASLVLIFKVLGEPIENLGPVDTRTRSPIHRSAPAFIQYN---SILERGMKVVDLLAPYRRGVKIGLLVGAGVSST

Arabidopsis top hits

e value

%identity

Alignment

AT5G08670.1 ATP synthase alpha/beta family protein

2.0e-14

54.67

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Query:  ASLVLIFKVLGEPIENLGPVDTRTRSPIHRSAPAFIQY---NSILERGMKVVDLLAPYRRGVKIGLLVGAGVSST
        A+L  I  VLGEPI+  G + T    PIHR APA +       IL  G+KVVDLLAPY+RG KIGL  GAGV  T
Subjt:  ASLVLIFKVLGEPIENLGPVDTRTRSPIHRSAPAFIQY---NSILERGMKVVDLLAPYRRGVKIGLLVGAGVSST

AT5G08680.1 ATP synthase alpha/beta family protein

2.0e-14

54.67

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Query:  ASLVLIFKVLGEPIENLGPVDTRTRSPIHRSAPAFIQY---NSILERGMKVVDLLAPYRRGVKIGLLVGAGVSST
        A+L  I  VLGEPI+  G + T    PIHR APA +       IL  G+KVVDLLAPY+RG KIGL  GAGV  T
Subjt:  ASLVLIFKVLGEPIENLGPVDTRTRSPIHRSAPAFIQY---NSILERGMKVVDLLAPYRRGVKIGLLVGAGVSST

AT5G08690.1 ATP synthase alpha/beta family protein

2.0e-14

54.67

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Query:  ASLVLIFKVLGEPIENLGPVDTRTRSPIHRSAPAFIQY---NSILERGMKVVDLLAPYRRGVKIGLLVGAGVSST
        A+L  I  VLGEPI+  G + T    PIHR APA +       IL  G+KVVDLLAPY+RG KIGL  GAGV  T
Subjt:  ASLVLIFKVLGEPIENLGPVDTRTRSPIHRSAPAFIQY---NSILERGMKVVDLLAPYRRGVKIGLLVGAGVSST

ATCG00480.1 ATP synthase subunit beta

1.0e-23

71.05

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Query:  GASLVLIFKVLGEPIENLGPVDTRTRSPIHRSAPAFIQYN---SILERGMKVVDLLAPYRRGVKIGLLVGAGVSST
        GA+L  IF VLGEP++NLGPVDTRT SPIH+SAPAFI+ +   SI E G+KVVDLLAPYRRG KIGL  GAGV  T
Subjt:  GASLVLIFKVLGEPIENLGPVDTRTRSPIHRSAPAFIQYN---SILERGMKVVDLLAPYRRGVKIGLLVGAGVSST

Sequences

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CDS sequence

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GTCGGAGCTTCTCTCGTCCTAATTTTCAAGGTACTTGGAGAGCCCATTGAGAATTTGGGTCCTGTAGATACTCGCACAAGATCTCCTATTCATAGATCTGCCCCTGCTTT
TATACAATACAACTCTATTTTAGAAAGAGGAATGAAAGTAGTAGATCTTTTAGCCCCTTATCGCCGTGGAGTCAAAATAGGACTATTGGTAGGGGCTGGAGTGTCCAGTA
CTCATTATAGAATTGATCAATCAACAACATTGCCCAAGCTCATGAAGGTGTATCCGTATTTG

mRNA sequence

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Protein sequence

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VGASLVLIFKVLGEPIENLGPVDTRTRSPIHRSAPAFIQYNSILERGMKVVDLLAPYRRGVKIGLLVGAGVSSTHYRIDQSTTLPKLMKVYPYL

Carg28241 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome