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Carg28246 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg28246
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionLow temperature and salt responsive protein family
Genome locationCarg_Chr10:10659941..10660486
RNA-Seq ExpressionCarg28246
SyntenyCarg28246
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR000612 - Proteolipid membrane potential modulator


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF7818031.1 hydrophobic protein RCI2B [Senna tora]5.6e-2292.98Show/hide
Query:  MADPGTANCIDILLAILLPPLGVFLKFGCQVEFWICLVLTLFGYLPGIIYAVYAITK
        MADPGTANCIDILLAI+LPPLGVFLKFGC+VEFWICL+LT+FGYLPGIIYAVYAITK
Subjt:  MADPGTANCIDILLAILLPPLGVFLKFGCQVEFWICLVLTLFGYLPGIIYAVYAITK

PNX74370.1 hydrophobic protein LTI6A-like [Trifolium pratense]2.8e-2192.98Show/hide
Query:  MADPGTANCIDILLAILLPPLGVFLKFGCQVEFWICLVLTLFGYLPGIIYAVYAITK
        MAD GTANCIDILLAI+LPPLGVFLKFGC VEFWICLVLTLFGY+PGIIYAVYAITK
Subjt:  MADPGTANCIDILLAILLPPLGVFLKFGCQVEFWICLVLTLFGYLPGIIYAVYAITK

RWW57479.1 hypothetical protein BHE74_00035732 [Ensete ventricosum]9.5e-2294.74Show/hide
Query:  MADPGTANCIDILLAILLPPLGVFLKFGCQVEFWICLVLTLFGYLPGIIYAVYAITK
        MAD GTANCIDILLAI+LPPLGVFLKFGCQVEFWICL+LTLFGYLPGIIYAVYAITK
Subjt:  MADPGTANCIDILLAILLPPLGVFLKFGCQVEFWICLVLTLFGYLPGIIYAVYAITK

XP_022961459.1 hydrophobic protein LTI6B-like [Cucurbita moschata]2.9e-23100Show/hide
Query:  MADPGTANCIDILLAILLPPLGVFLKFGCQVEFWICLVLTLFGYLPGIIYAVYAITK
        MADPGTANCIDILLAILLPPLGVFLKFGCQVEFWICLVLTLFGYLPGIIYAVYAITK
Subjt:  MADPGTANCIDILLAILLPPLGVFLKFGCQVEFWICLVLTLFGYLPGIIYAVYAITK

XP_038705733.1 hydrophobic protein LTI6B-like [Tripterygium wilfordii]1.6e-2192.98Show/hide
Query:  MADPGTANCIDILLAILLPPLGVFLKFGCQVEFWICLVLTLFGYLPGIIYAVYAITK
        MAD GTANCIDILLAILLPPLGVFLKFGC+VEFWICLVLTLFGY+PGIIYA+YAITK
Subjt:  MADPGTANCIDILLAILLPPLGVFLKFGCQVEFWICLVLTLFGYLPGIIYAVYAITK

TrEMBL top hitse value%identityAlignment
A0A0A0M1D6 Uncharacterized protein1.7e-2192.98Show/hide
Query:  MADPGTANCIDILLAILLPPLGVFLKFGCQVEFWICLVLTLFGYLPGIIYAVYAITK
        MAD GT NCIDILLAILLPPLGVFLKFGCQVEFWICLVLT FGY+PGIIYAVYAITK
Subjt:  MADPGTANCIDILLAILLPPLGVFLKFGCQVEFWICLVLTLFGYLPGIIYAVYAITK

A0A2K3L766 Hydrophobic protein LTI6A-like1.3e-2192.98Show/hide
Query:  MADPGTANCIDILLAILLPPLGVFLKFGCQVEFWICLVLTLFGYLPGIIYAVYAITK
        MAD GTANCIDILLAI+LPPLGVFLKFGC VEFWICLVLTLFGY+PGIIYAVYAITK
Subjt:  MADPGTANCIDILLAILLPPLGVFLKFGCQVEFWICLVLTLFGYLPGIIYAVYAITK

A0A6J1HE36 hydrophobic protein LTI6B-like1.4e-23100Show/hide
Query:  MADPGTANCIDILLAILLPPLGVFLKFGCQVEFWICLVLTLFGYLPGIIYAVYAITK
        MADPGTANCIDILLAILLPPLGVFLKFGCQVEFWICLVLTLFGYLPGIIYAVYAITK
Subjt:  MADPGTANCIDILLAILLPPLGVFLKFGCQVEFWICLVLTLFGYLPGIIYAVYAITK

A0A6J1HUN0 hydrophobic protein LTI6B-like1.4e-23100Show/hide
Query:  MADPGTANCIDILLAILLPPLGVFLKFGCQVEFWICLVLTLFGYLPGIIYAVYAITK
        MADPGTANCIDILLAILLPPLGVFLKFGCQVEFWICLVLTLFGYLPGIIYAVYAITK
Subjt:  MADPGTANCIDILLAILLPPLGVFLKFGCQVEFWICLVLTLFGYLPGIIYAVYAITK

M0RN96 Uncharacterized protein1.7e-2192.98Show/hide
Query:  MADPGTANCIDILLAILLPPLGVFLKFGCQVEFWICLVLTLFGYLPGIIYAVYAITK
        MAD GT NCIDIL+AILLPPLGVFLKFGCQVEFWICL+LTLFGYLPGIIYAVYAITK
Subjt:  MADPGTANCIDILLAILLPPLGVFLKFGCQVEFWICLVLTLFGYLPGIIYAVYAITK

SwissProt top hitse value%identityAlignment
A2Y075 Hydrophobic protein LTI6B1.2e-1983.02Show/hide
Query:  GTANCIDILLAILLPPLGVFLKFGCQVEFWICLVLTLFGYLPGIIYAVYAITK
        GTANCIDIL+AI+LPPLGVFLKFGC  EFWICL+LT  GY+PGIIYA+YAITK
Subjt:  GTANCIDILLAILLPPLGVFLKFGCQVEFWICLVLTLFGYLPGIIYAVYAITK

Q0DKW8 Hydrophobic protein LTI6B1.2e-1983.02Show/hide
Query:  GTANCIDILLAILLPPLGVFLKFGCQVEFWICLVLTLFGYLPGIIYAVYAITK
        GTANCIDIL+AI+LPPLGVFLKFGC  EFWICL+LT  GY+PGIIYA+YAITK
Subjt:  GTANCIDILLAILLPPLGVFLKFGCQVEFWICLVLTLFGYLPGIIYAVYAITK

Q8H5T6 Hydrophobic protein LTI6A7.8e-1978.95Show/hide
Query:  MADPGTANCIDILLAILLPPLGVFLKFGCQVEFWICLVLTLFGYLPGIIYAVYAITK
        MAD  TA CIDI+LAI+LPPLGVF KFGC +EFWICL+LT FGYLPGIIYAV+ ITK
Subjt:  MADPGTANCIDILLAILLPPLGVFLKFGCQVEFWICLVLTLFGYLPGIIYAVYAITK

Q9ZNQ7 Hydrophobic protein RCI2A2.5e-1776.92Show/hide
Query:  TANCIDILLAILLPPLGVFLKFGCQVEFWICLVLTLFGYLPGIIYAVYAITK
        TA  +DI++AILLPPLGVFL+FGC VEFWICLVLTL GY+PGIIYA+Y +TK
Subjt:  TANCIDILLAILLPPLGVFLKFGCQVEFWICLVLTLFGYLPGIIYAVYAITK

Q9ZNS6 Hydrophobic protein RCI2B5.1e-1878.85Show/hide
Query:  TANCIDILLAILLPPLGVFLKFGCQVEFWICLVLTLFGYLPGIIYAVYAITK
        TA  ++I+LAI+LPPLGVFLKFGC+VEFWICL+LTLFGYLPGI+YA+Y ITK
Subjt:  TANCIDILLAILLPPLGVFLKFGCQVEFWICLVLTLFGYLPGIIYAVYAITK

Arabidopsis top hitse value%identityAlignment
AT1G57550.1 Low temperature and salt responsive protein family1.1e-1256.25Show/hide
Query:  IDILLAILLPPLGVFLKFGCQVEFWICLVLTLFGYLPGIIYAVYAITK
        +++L AI +PP+GVFL++G  +EFW+CL+LTLF ++PG+IYA+Y +TK
Subjt:  IDILLAILLPPLGVFLKFGCQVEFWICLVLTLFGYLPGIIYAVYAITK

AT2G24040.1 Low temperature and salt responsive protein family9.5e-1268.75Show/hide
Query:  CIDILLAILLPPLGVFLKFG-CQVEFWICLVLTLFGYLPGIIYAVYAI
        C +I +AILLPP+GV L+ G C VEF+ICL+LT  GYLPGIIYA+YAI
Subjt:  CIDILLAILLPPLGVFLKFG-CQVEFWICLVLTLFGYLPGIIYAVYAI

AT2G38905.1 Low temperature and salt responsive protein family3.1e-1564.71Show/hide
Query:  GTANCIDILLAILLPPLGVFLKFGCQVEFWICLVLTLFGYLPGIIYAVYAI
        G+   ++I+LAILLPP+GVFL++GC VEFWICL+LT+ GY+PGIIYA+Y +
Subjt:  GTANCIDILLAILLPPLGVFLKFGCQVEFWICLVLTLFGYLPGIIYAVYAI

AT3G05880.1 Low temperature and salt responsive protein family1.8e-1876.92Show/hide
Query:  TANCIDILLAILLPPLGVFLKFGCQVEFWICLVLTLFGYLPGIIYAVYAITK
        TA  +DI++AILLPPLGVFL+FGC VEFWICLVLTL GY+PGIIYA+Y +TK
Subjt:  TANCIDILLAILLPPLGVFLKFGCQVEFWICLVLTLFGYLPGIIYAVYAITK

AT3G05890.1 Low temperature and salt responsive protein family3.6e-1978.85Show/hide
Query:  TANCIDILLAILLPPLGVFLKFGCQVEFWICLVLTLFGYLPGIIYAVYAITK
        TA  ++I+LAI+LPPLGVFLKFGC+VEFWICL+LTLFGYLPGI+YA+Y ITK
Subjt:  TANCIDILLAILLPPLGVFLKFGCQVEFWICLVLTLFGYLPGIIYAVYAITK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGACCCGGGCACCGCCAACTGCATCGATATCCTTCTGGCTATTCTCCTGCCGCCTCTCGGAGTGTTTCTCAAATTTGGATGCCAGGTTGAGTTTTGGATCTGTTT
GGTGCTAACTTTGTTCGGATATCTCCCCGGGATCATCTATGCTGTTTATGCTATCACCAAGTGA
mRNA sequenceShow/hide mRNA sequence
CATCGCTACCCACTACCACTGCTTCTAACGCCTCCTCCATTCCCCTCTGTTGAATCCGAAGAAATTTCATAAGCAAAACATGGCCGACCCGGGCACCGCCAACTGCATCG
ATATCCTTCTGGCTATTCTCCTGCCGCCTCTCGGAGTGTTTCTCAAATTTGGATGCCAGGTTGAGTTTTGGATCTGTTTGGTGCTAACTTTGTTCGGATATCTCCCCGGG
ATCATCTATGCTGTTTATGCTATCACCAAGTGATTCCGAGATGTGCTTCATCATCAAACTGTGTGTTTAGTTTGGTTTGTGCTATGTGTTTGTGTGCTGTGCTTCGTTTC
TAAATTCTTTTTTCTTGCGTTTTGTGGTTGTTGCTGTTGGTTGGATTGATTGAATTGGTTGTTGTAAACAAAATCCATCCTACTTTTTCTTCAACTTAATTACAACTTTA
CTTATATTTT
Protein sequenceShow/hide protein sequence
MADPGTANCIDILLAILLPPLGVFLKFGCQVEFWICLVLTLFGYLPGIIYAVYAITK