; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg28252 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg28252
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionnuclear speckle splicing regulatory protein 1-like
Genome locationCarg_Chr13:4740942..4742710
RNA-Seq ExpressionCarg28252
SyntenyCarg28252
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6583699.1 NDR1/HIN1-like protein 1, partial [Cucurbita argyrosperma subsp. sororia]2.9e-7693.53Show/hide
Query:  VEREISRQASKNKALKDVTKKSDISDFYFNLQKNIAYGAGNAVEPREPLQKLQSEKQAEVQKLKKHEESANADIVNDHQSPKYPSSPSQSAKIIEQDRHL
        +E E  RQ  + K   DVTKKSDISDFYFNLQKNIAYGAGNAVEPREPLQKLQSEKQAEVQKLKKHEESANADIVNDHQSPKYPSSPSQSAKIIEQDRHL
Subjt:  VEREISRQASKNKALKDVTKKSDISDFYFNLQKNIAYGAGNAVEPREPLQKLQSEKQAEVQKLKKHEESANADIVNDHQSPKYPSSPSQSAKIIEQDRHL

Query:  EEHLSNSNKTTPSDVRGTSPPPLHNKTPVEKQPEHDQGEQQPKRDHHKRSENAVAAAKERFLARKRTKEV
        EEHLSNSNKTTPSDVRGTSPPPLHNKTPVEKQPEHDQGEQQPKRDHHKRSENAVAAAKERFLARKRTKEV
Subjt:  EEHLSNSNKTTPSDVRGTSPPPLHNKTPVEKQPEHDQGEQQPKRDHHKRSENAVAAAKERFLARKRTKEV

KAG7019350.1 hypothetical protein SDJN02_18310, partial [Cucurbita argyrosperma subsp. argyrosperma]4.5e-106100Show/hide
Query:  MSKYGLQLRVKPSQQKQHTRPPLPAPLGFQDDDDDDVEREISRQASKNKALKDVTKKSDISDFYFNLQKNIAYGAGNAVEPREPLQKLQSEKQAEVQKLK
        MSKYGLQLRVKPSQQKQHTRPPLPAPLGFQDDDDDDVEREISRQASKNKALKDVTKKSDISDFYFNLQKNIAYGAGNAVEPREPLQKLQSEKQAEVQKLK
Subjt:  MSKYGLQLRVKPSQQKQHTRPPLPAPLGFQDDDDDDVEREISRQASKNKALKDVTKKSDISDFYFNLQKNIAYGAGNAVEPREPLQKLQSEKQAEVQKLK

Query:  KHEESANADIVNDHQSPKYPSSPSQSAKIIEQDRHLEEHLSNSNKTTPSDVRGTSPPPLHNKTPVEKQPEHDQGEQQPKRDHHKRSENAVAAAKERFLAR
        KHEESANADIVNDHQSPKYPSSPSQSAKIIEQDRHLEEHLSNSNKTTPSDVRGTSPPPLHNKTPVEKQPEHDQGEQQPKRDHHKRSENAVAAAKERFLAR
Subjt:  KHEESANADIVNDHQSPKYPSSPSQSAKIIEQDRHLEEHLSNSNKTTPSDVRGTSPPPLHNKTPVEKQPEHDQGEQQPKRDHHKRSENAVAAAKERFLAR

Query:  KRTKEV
        KRTKEV
Subjt:  KRTKEV

XP_022927406.1 nuclear speckle splicing regulatory protein 1-like [Cucurbita moschata]4.2e-8862.81Show/hide
Query:  MSKYGLQLRVKPSQQKQHTRPPLPAPLGFQDDDDDDVEREISRQASKNKALK------------------------------------------------
        MSKYGLQLRVKPSQQKQ TRPPLPAPLGFQDDDDDDVEREISRQASKNKALK                                                
Subjt:  MSKYGLQLRVKPSQQKQHTRPPLPAPLGFQDDDDDDVEREISRQASKNKALK------------------------------------------------

Query:  ------------------------------------------------------------------DVTKKSDISDFYFNLQKNIAYGAGNAVEPREPLQ
                                                                          DVTKKSDISDFYFNLQKNIAYGAGNAVEPREP Q
Subjt:  ------------------------------------------------------------------DVTKKSDISDFYFNLQKNIAYGAGNAVEPREPLQ

Query:  KLQSEKQAEVQKLKKHEESANADIVNDHQSPKYPSSPSQSAKIIEQDRHLEEHLSNSNKTTPSDVRGTSPPPLHNKTPVEKQPEHDQGEQQPKRDHHKRS
        KLQSEKQAEVQKLKKHEESANADIVNDHQSPKYPSSPSQSAK IEQDRHLEEHLSNSNKTTPSDVRGTSPPPLHN+TPVEKQPEHDQGEQQPKRDHHKRS
Subjt:  KLQSEKQAEVQKLKKHEESANADIVNDHQSPKYPSSPSQSAKIIEQDRHLEEHLSNSNKTTPSDVRGTSPPPLHNKTPVEKQPEHDQGEQQPKRDHHKRS

Query:  ENAVAAAKERFLARKRTKEV
        E+AVAAAKERFLARKRTKEV
Subjt:  ENAVAAAKERFLARKRTKEV

XP_022973152.1 nuclear speckle splicing regulatory protein 1-like [Cucurbita maxima]4.7e-8762.19Show/hide
Query:  MSKYGLQLRVKPSQQKQHTRPPLPAPLGFQDDDDDDVEREISRQASKNKALK------------------------------------------------
        MSKYGLQLRVKPSQQKQ TRPPLPAPLGFQDDDDDDVEREISRQASKNKALK                                                
Subjt:  MSKYGLQLRVKPSQQKQHTRPPLPAPLGFQDDDDDDVEREISRQASKNKALK------------------------------------------------

Query:  ------------------------------------------------------------------DVTKKSDISDFYFNLQKNIAYGAGNAVEPREPLQ
                                                                          DVTKKSDISDFYFNLQKNIAYGAGNAVEPREP Q
Subjt:  ------------------------------------------------------------------DVTKKSDISDFYFNLQKNIAYGAGNAVEPREPLQ

Query:  KLQSEKQAEVQKLKKHEESANADIVNDHQSPKYPSSPSQSAKIIEQDRHLEEHLSNSNKTTPSDVRGTSPPPLHNKTPVEKQPEHDQGEQQPKRDHHKRS
        KLQSEKQA+VQK+KKH ESANADIVNDHQSPKYPSSPSQSAK IEQDRHLEEHLSNSNKTTPSDVRGTSPPPLHNKTPVEKQPEHDQGEQQPKRDHHKRS
Subjt:  KLQSEKQAEVQKLKKHEESANADIVNDHQSPKYPSSPSQSAKIIEQDRHLEEHLSNSNKTTPSDVRGTSPPPLHNKTPVEKQPEHDQGEQQPKRDHHKRS

Query:  ENAVAAAKERFLARKRTKEV
        E+AVAAAKERFLARKRTKEV
Subjt:  ENAVAAAKERFLARKRTKEV

XP_023520694.1 nuclear speckle splicing regulatory protein 1-like [Cucurbita pepo subsp. pepo]5.5e-8862.81Show/hide
Query:  MSKYGLQLRVKPSQQKQHTRPPLPAPLGFQDDDDDDVEREISRQASKNKALK------------------------------------------------
        MSKYGLQLRVKPSQQKQ TRPPLPAPLGFQDDDDDDVEREISRQASKNKALK                                                
Subjt:  MSKYGLQLRVKPSQQKQHTRPPLPAPLGFQDDDDDDVEREISRQASKNKALK------------------------------------------------

Query:  ------------------------------------------------------------------DVTKKSDISDFYFNLQKNIAYGAGNAVEPREPLQ
                                                                          DVTKKSDISDFYFNLQKNIAYGAGNAVEPREP Q
Subjt:  ------------------------------------------------------------------DVTKKSDISDFYFNLQKNIAYGAGNAVEPREPLQ

Query:  KLQSEKQAEVQKLKKHEESANADIVNDHQSPKYPSSPSQSAKIIEQDRHLEEHLSNSNKTTPSDVRGTSPPPLHNKTPVEKQPEHDQGEQQPKRDHHKRS
        KLQSEKQAEVQKLKKHEES NADIVNDHQSPKYPSSPSQSAK IEQDRHLEEHLSNSNKTTPSDVRGTSPPPLHNKTPVEKQPEHDQGEQQPKRDHHKRS
Subjt:  KLQSEKQAEVQKLKKHEESANADIVNDHQSPKYPSSPSQSAKIIEQDRHLEEHLSNSNKTTPSDVRGTSPPPLHNKTPVEKQPEHDQGEQQPKRDHHKRS

Query:  ENAVAAAKERFLARKRTKEV
        E+AVAAAKERFLARKRTKEV
Subjt:  ENAVAAAKERFLARKRTKEV

TrEMBL top hitse value%identityAlignment
A0A0A0LJE9 DUF2040 domain-containing protein1.4e-5747.99Show/hide
Query:  MSKYGLQLRVKPSQQKQHTRPPLPAPLGFQDDDDDDVEREISRQASKNKALK------------------------------------------------
        MSKYGLQLRVKPSQQKQ TRPPLPAPLGFQDDDDDDVEREISRQASKNKALK                                                
Subjt:  MSKYGLQLRVKPSQQKQHTRPPLPAPLGFQDDDDDDVEREISRQASKNKALK------------------------------------------------

Query:  ------------------------------------------------------------------DVTKKSDISDFYFNLQKNIAYGAGNAVEPREPLQ
                                                                          DVTKKSD+SDFYF+LQKN+AYGA NA+EP  P +
Subjt:  ------------------------------------------------------------------DVTKKSDISDFYFNLQKNIAYGAGNAVEPREPLQ

Query:  KLQ---SEKQAEVQKLKKHEESANADIVNDHQSPKYPSSPSQSAKIIEQDRHLEEHLSNSNKTTPSDVRGTSPPPLHNKTPVEKQPEHDQGEQQPKRDHH
        KLQ    EKQ EV  L+KHEES N D  NDH   +  + PS S K IE+  HLEE L  SNKTTPS++ GTSPP LH+KTPV++QP+H+Q EQ PK DHH
Subjt:  KLQ---SEKQAEVQKLKKHEESANADIVNDHQSPKYPSSPSQSAKIIEQDRHLEEHLSNSNKTTPSDVRGTSPPPLHNKTPVEKQPEHDQGEQQPKRDHH

Query:  KRSENAVAAAKERFLARKRTKEV
        KR+E+AVAAAKERFLARKR KEV
Subjt:  KRSENAVAAAKERFLARKRTKEV

A0A1S4E1R3 nuclear speckle splicing regulatory protein 1-like isoform X23.0e-5546.75Show/hide
Query:  MSKYGLQLRVKPSQQKQHTRPPLPAPLGFQDDDDDDVEREISRQASKNKALK------------------------------------------------
        MSKYGLQLRVKPSQQKQ  RPPLPAPLGFQDDDDD+VEREISRQASKNKALK                                                
Subjt:  MSKYGLQLRVKPSQQKQHTRPPLPAPLGFQDDDDDDVEREISRQASKNKALK------------------------------------------------

Query:  ------------------------------------------------------------------DVTKKSDISDFYFNLQKNIAYGAGNAVEPREPLQ
                                                                          DVTKKSD+SDFYF+LQKN+AYGA NA+EPR   +
Subjt:  ------------------------------------------------------------------DVTKKSDISDFYFNLQKNIAYGAGNAVEPREPLQ

Query:  KLQ---SEKQAEVQKLKKHEESANADIVNDHQSPKYPSSPSQSAKIIEQDRHLEEHLSNSNKTTPSDVRGTSPPPLHNKTPVEKQPEHDQGEQQPKRDHH
        KLQ    EKQ EV  L+KHEES N D  NDHQ         Q++K IE+  HLEE LS SNKTTPSD+ GTSPP LH+K  V+++P+H+  EQ PKRDHH
Subjt:  KLQ---SEKQAEVQKLKKHEESANADIVNDHQSPKYPSSPSQSAKIIEQDRHLEEHLSNSNKTTPSDVRGTSPPPLHNKTPVEKQPEHDQGEQQPKRDHH

Query:  KRSENAVAAAKERFLARKRTKEV
        KR+E+AVAAAKERFLARKR KEV
Subjt:  KRSENAVAAAKERFLARKRTKEV

A0A6J1CNT9 nuclear speckle splicing regulatory protein 1-like1.0e-5548.3Show/hide
Query:  MSKYGLQLRVKPSQQKQHTRPPLPAPLGFQDDDDDDVEREISRQASKNKALK------------------------------------------------
        MSKYGLQLRVKPSQQKQ TRPPLP  LGFQDDDD+DVEREISRQA+KNKALK                                                
Subjt:  MSKYGLQLRVKPSQQKQHTRPPLPAPLGFQDDDDDDVEREISRQASKNKALK------------------------------------------------

Query:  ------------------------------------------------------------------DVTKKSDISDFYFNLQKNIAYGAGNAVEPREPLQ
                                                                          DVTKKSDISDFYFNLQKNIA+GA NAV+ REP +
Subjt:  ------------------------------------------------------------------DVTKKSDISDFYFNLQKNIAYGAGNAVEPREPLQ

Query:  KLQSEKQ---AEVQKLKKHEESANADIVNDHQSPKYPSSPSQSAKIIEQDRHLEEHLSNSNKTTPSDVRGTSPPPLHNKTPVEKQPEHDQGEQQPKRDHH
        +LQSE+Q   +EV++L+KHEESANAD  N+ QS K  + PSQSAK++E+  H EE    SNKTTPSDV   SPP LH+KT V++QP+H QGEQQPKRDHH
Subjt:  KLQSEKQ---AEVQKLKKHEESANADIVNDHQSPKYPSSPSQSAKIIEQDRHLEEHLSNSNKTTPSDVRGTSPPPLHNKTPVEKQPEHDQGEQQPKRDHH

Query:  KRSENAVAAAKERFLARKRTKEV
        KRSE+AV AAKERFLARKR K+V
Subjt:  KRSENAVAAAKERFLARKRTKEV

A0A6J1EHK7 nuclear speckle splicing regulatory protein 1-like2.1e-8862.81Show/hide
Query:  MSKYGLQLRVKPSQQKQHTRPPLPAPLGFQDDDDDDVEREISRQASKNKALK------------------------------------------------
        MSKYGLQLRVKPSQQKQ TRPPLPAPLGFQDDDDDDVEREISRQASKNKALK                                                
Subjt:  MSKYGLQLRVKPSQQKQHTRPPLPAPLGFQDDDDDDVEREISRQASKNKALK------------------------------------------------

Query:  ------------------------------------------------------------------DVTKKSDISDFYFNLQKNIAYGAGNAVEPREPLQ
                                                                          DVTKKSDISDFYFNLQKNIAYGAGNAVEPREP Q
Subjt:  ------------------------------------------------------------------DVTKKSDISDFYFNLQKNIAYGAGNAVEPREPLQ

Query:  KLQSEKQAEVQKLKKHEESANADIVNDHQSPKYPSSPSQSAKIIEQDRHLEEHLSNSNKTTPSDVRGTSPPPLHNKTPVEKQPEHDQGEQQPKRDHHKRS
        KLQSEKQAEVQKLKKHEESANADIVNDHQSPKYPSSPSQSAK IEQDRHLEEHLSNSNKTTPSDVRGTSPPPLHN+TPVEKQPEHDQGEQQPKRDHHKRS
Subjt:  KLQSEKQAEVQKLKKHEESANADIVNDHQSPKYPSSPSQSAKIIEQDRHLEEHLSNSNKTTPSDVRGTSPPPLHNKTPVEKQPEHDQGEQQPKRDHHKRS

Query:  ENAVAAAKERFLARKRTKEV
        E+AVAAAKERFLARKRTKEV
Subjt:  ENAVAAAKERFLARKRTKEV

A0A6J1I6R6 nuclear speckle splicing regulatory protein 1-like2.3e-8762.19Show/hide
Query:  MSKYGLQLRVKPSQQKQHTRPPLPAPLGFQDDDDDDVEREISRQASKNKALK------------------------------------------------
        MSKYGLQLRVKPSQQKQ TRPPLPAPLGFQDDDDDDVEREISRQASKNKALK                                                
Subjt:  MSKYGLQLRVKPSQQKQHTRPPLPAPLGFQDDDDDDVEREISRQASKNKALK------------------------------------------------

Query:  ------------------------------------------------------------------DVTKKSDISDFYFNLQKNIAYGAGNAVEPREPLQ
                                                                          DVTKKSDISDFYFNLQKNIAYGAGNAVEPREP Q
Subjt:  ------------------------------------------------------------------DVTKKSDISDFYFNLQKNIAYGAGNAVEPREPLQ

Query:  KLQSEKQAEVQKLKKHEESANADIVNDHQSPKYPSSPSQSAKIIEQDRHLEEHLSNSNKTTPSDVRGTSPPPLHNKTPVEKQPEHDQGEQQPKRDHHKRS
        KLQSEKQA+VQK+KKH ESANADIVNDHQSPKYPSSPSQSAK IEQDRHLEEHLSNSNKTTPSDVRGTSPPPLHNKTPVEKQPEHDQGEQQPKRDHHKRS
Subjt:  KLQSEKQAEVQKLKKHEESANADIVNDHQSPKYPSSPSQSAKIIEQDRHLEEHLSNSNKTTPSDVRGTSPPPLHNKTPVEKQPEHDQGEQQPKRDHHKRS

Query:  ENAVAAAKERFLARKRTKEV
        E+AVAAAKERFLARKRTKEV
Subjt:  ENAVAAAKERFLARKRTKEV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G55928.1 Coiled-coil domain-containing protein 55 (DUF2040)1.1e-0450.94Show/hide
Query:  MSKYGLQLRVKPSQQKQHTRPPLP-APLGFQDDDDDDVEREISRQASKNKALK
        M+K+GLQLR      K  ++  LP AP+  +D++D+DV++EISRQASK K+LK
Subjt:  MSKYGLQLRVKPSQQKQHTRPPLP-APLGFQDDDDDDVEREISRQASKNKALK

AT1G55928.1 Coiled-coil domain-containing protein 55 (DUF2040)2.6e-0328.93Show/hide
Query:  DDDDDDVEREISRQASKNKALKDVTKKSDISDFYFNLQKNIAYGAGNAVEPREPLQKLQSEKQAEVQKLKKHEESANADIVNDHQSPKYPSSPSQSAKII
        ++ D  +  E  R+  + K   DVTKK D+SDFYFN+ KN+A+GA + ++ RE  +  +  K  ++++L++  ++ + + V    S    SS     ++ 
Subjt:  DDDDDDVEREISRQASKNKALKDVTKKSDISDFYFNLQKNIAYGAGNAVEPREPLQKLQSEKQAEVQKLKKHEESANADIVNDHQSPKYPSSPSQSAKII

Query:  EQDRHLEEHLSNSNKTTPSDV
        E +    E   NS+ T   D+
Subjt:  EQDRHLEEHLSNSNKTTPSDV

AT2G27285.1 Coiled-coil domain-containing protein 55 (DUF2040)1.2e-0825.37Show/hide
Query:  MSKYGLQLRVKPSQQKQ-HTRPPLPAPLGFQDDDDDDVEREISRQASKNKALK-----------------------------------------------
        M KYGLQ+R  PSQ+KQ  +RPPL     F +++D DVE+EISRQA+K KA K                                               
Subjt:  MSKYGLQLRVKPSQQKQ-HTRPPLPAPLGFQDDDDDDVEREISRQASKNKALK-----------------------------------------------

Query:  -------------------------------------------------------------------DVTKKSDISDFYFNLQKNIAYGA-------GNA
                                                                           DVTKK D+SDFYFN+ KN+A+GA          
Subjt:  -------------------------------------------------------------------DVTKKSDISDFYFNLQKNIAYGA-------GNA

Query:  VEPREPLQKLQSEKQA--------EVQKLKKHEESANADIVNDHQSPKYPSSPSQSAKIIEQDRHLEEHLSNSNKTTPSDVRGTSPPPLHNKTPVEKQPE
        +E +   +KL+ +++A        EV +++K  +S   ++  D  S ++ SS S+S + +E ++ + E    S+ T                    K   
Subjt:  VEPREPLQKLQSEKQA--------EVQKLKKHEESANADIVNDHQSPKYPSSPSQSAKIIEQDRHLEEHLSNSNKTTPSDVRGTSPPPLHNKTPVEKQPE

Query:  HDQGEQQPKR-DHHKRSENAVAAAKERFLARKRTK
         +  ++ PK  +  KR E+A+AAAKERFLARK+ K
Subjt:  HDQGEQQPKR-DHHKRSENAVAAAKERFLARKRTK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCAAGTACGGCCTACAACTTAGAGTTAAGCCATCACAGCAGAAACAGCATACAAGACCGCCCCTTCCTGCTCCTCTTGGATTTCAAGACGACGACGACGATGATGT
CGAGAGAGAGATATCCCGACAAGCTTCCAAGAATAAGGCACTTAAGGATGTTACCAAGAAGAGCGACATTAGCGACTTTTACTTCAACCTTCAAAAGAATATTGCCTACG
GTGCCGGTAATGCAGTCGAGCCGAGGGAACCTCTACAGAAGCTTCAATCAGAGAAGCAGGCTGAAGTCCAGAAATTGAAGAAGCATGAAGAGAGTGCTAATGCTGATATC
GTTAATGATCATCAGTCACCGAAATACCCCAGCTCGCCTTCCCAGTCAGCAAAGATAATAGAACAGGATCGTCACCTCGAAGAGCACCTTTCGAATTCAAACAAAACAAC
ACCGTCTGATGTACGAGGTACTAGCCCCCCTCCATTACACAATAAAACTCCAGTTGAGAAACAGCCCGAACATGACCAAGGTGAACAACAACCAAAGCGCGATCATCATA
AAAGAAGTGAAAATGCTGTCGCTGCTGCAAAAGAGCGATTTTTGGCTCGAAAAAGAACAAAGGAGGTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGCAAGTACGGCCTACAACTTAGAGTTAAGCCATCACAGCAGAAACAGCATACAAGACCGCCCCTTCCTGCTCCTCTTGGATTTCAAGACGACGACGACGATGATGT
CGAGAGAGAGATATCCCGACAAGCTTCCAAGAATAAGGCACTTAAGGATGTTACCAAGAAGAGCGACATTAGCGACTTTTACTTCAACCTTCAAAAGAATATTGCCTACG
GTGCCGGTAATGCAGTCGAGCCGAGGGAACCTCTACAGAAGCTTCAATCAGAGAAGCAGGCTGAAGTCCAGAAATTGAAGAAGCATGAAGAGAGTGCTAATGCTGATATC
GTTAATGATCATCAGTCACCGAAATACCCCAGCTCGCCTTCCCAGTCAGCAAAGATAATAGAACAGGATCGTCACCTCGAAGAGCACCTTTCGAATTCAAACAAAACAAC
ACCGTCTGATGTACGAGGTACTAGCCCCCCTCCATTACACAATAAAACTCCAGTTGAGAAACAGCCCGAACATGACCAAGGTGAACAACAACCAAAGCGCGATCATCATA
AAAGAAGTGAAAATGCTGTCGCTGCTGCAAAAGAGCGATTTTTGGCTCGAAAAAGAACAAAGGAGGTGTGA
Protein sequenceShow/hide protein sequence
MSKYGLQLRVKPSQQKQHTRPPLPAPLGFQDDDDDDVEREISRQASKNKALKDVTKKSDISDFYFNLQKNIAYGAGNAVEPREPLQKLQSEKQAEVQKLKKHEESANADI
VNDHQSPKYPSSPSQSAKIIEQDRHLEEHLSNSNKTTPSDVRGTSPPPLHNKTPVEKQPEHDQGEQQPKRDHHKRSENAVAAAKERFLARKRTKEV