; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg28254 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg28254
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionRibosomal protein S12
Genome locationCarg_Chr08:3674322..3674751
RNA-Seq ExpressionCarg28254
SyntenyCarg28254
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR006032 - Ribosomal protein S12/S23
IPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AQK77835.1 ribosomal protein S12 [Lophophytum mirabile subsp. bolivianum]4.3e-3868.42Show/hide
Query:  MLTLSQLIRHGREEKRLTDSTRASNQC--------------PKKPNSTPRKIAKVRLSNRHDIFTHILGEGHNLQEHSMVLTRGGRVKDLPGVKSHFILG
        M T +QLIRHGREEKR TD TRAS+QC              PKKPNS PRKIAKVRLSNRHDIF HI GEGHNLQEHSMVL RGGRVKDLPGVKSH I G
Subjt:  MLTLSQLIRHGREEKRLTDSTRASNQC--------------PKKPNSTPRKIAKVRLSNRHDIFTHILGEGHNLQEHSMVLTRGGRVKDLPGVKSHFILG

Query:  VMDLLGISDRRRGRSKIWYSLTCIPIHCKKNLI
        V DLLGI DRRRGRSK       I +    NL+
Subjt:  VMDLLGISDRRRGRSKIWYSLTCIPIHCKKNLI

KAG7025766.1 Ribosomal protein S12, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma]5.2e-68100Show/hide
Query:  MLTLSQLIRHGREEKRLTDSTRASNQCPKKPNSTPRKIAKVRLSNRHDIFTHILGEGHNLQEHSMVLTRGGRVKDLPGVKSHFILGVMDLLGISDRRRGR
        MLTLSQLIRHGREEKRLTDSTRASNQCPKKPNSTPRKIAKVRLSNRHDIFTHILGEGHNLQEHSMVLTRGGRVKDLPGVKSHFILGVMDLLGISDRRRGR
Subjt:  MLTLSQLIRHGREEKRLTDSTRASNQCPKKPNSTPRKIAKVRLSNRHDIFTHILGEGHNLQEHSMVLTRGGRVKDLPGVKSHFILGVMDLLGISDRRRGR

Query:  SKIWYSLTCIPIHCKKNLIDNELQDAFLP
        SKIWYSLTCIPIHCKKNLIDNELQDAFLP
Subjt:  SKIWYSLTCIPIHCKKNLIDNELQDAFLP

QWX88123.1 ribosomal protein S12 [Indigofera tinctoria]3.3e-3876.72Show/hide
Query:  MLTLSQLIRHGREEKRLTDSTRASNQC--------------PKKPNSTPRKIAKVRLSNRHDIFTHILGEGHNLQEHSMVLTRGGRVKDLPGVKSHFILG
        M TL+QLIRHGREEKR TD TRAS+QC              PKKPNS PRKIAKVRLSNRHDIF HI GEGHNLQEHSMVL RGGRVKDLPGVKSH I G
Subjt:  MLTLSQLIRHGREEKRLTDSTRASNQC--------------PKKPNSTPRKIAKVRLSNRHDIFTHILGEGHNLQEHSMVLTRGGRVKDLPGVKSHFILG

Query:  VMDLLGISDRRRGRSK
        V DLLGI DRRRGRSK
Subjt:  VMDLLGISDRRRGRSK

RYR38273.1 hypothetical protein Ahy_A09g043262 isoform B [Arachis hypogaea]2.5e-3876.72Show/hide
Query:  MLTLSQLIRHGREEKRLTDSTRASNQC--------------PKKPNSTPRKIAKVRLSNRHDIFTHILGEGHNLQEHSMVLTRGGRVKDLPGVKSHFILG
        M TL+QLIRHGREEKR TD TRAS+QC              PKKPNS PRKIAKVRLSNRHDIF HILGEGHN QEHSMVL RGGRVKDLPGVKSH I G
Subjt:  MLTLSQLIRHGREEKRLTDSTRASNQC--------------PKKPNSTPRKIAKVRLSNRHDIFTHILGEGHNLQEHSMVLTRGGRVKDLPGVKSHFILG

Query:  VMDLLGISDRRRGRSK
        V DLLGI DRRRGRSK
Subjt:  VMDLLGISDRRRGRSK

YP_009941470.1 ribosomal protein S12 [Fagus sylvatica]3.3e-3876.72Show/hide
Query:  MLTLSQLIRHGREEKRLTDSTRASNQC--------------PKKPNSTPRKIAKVRLSNRHDIFTHILGEGHNLQEHSMVLTRGGRVKDLPGVKSHFILG
        M TL+QLIRHGREEKR TD TRAS+QC              PKKPNS PRKIAKVRLSNRHDIF HI GEGHNLQEHSMVL RGGRVKDLPGVKSH I G
Subjt:  MLTLSQLIRHGREEKRLTDSTRASNQC--------------PKKPNSTPRKIAKVRLSNRHDIFTHILGEGHNLQEHSMVLTRGGRVKDLPGVKSHFILG

Query:  VMDLLGISDRRRGRSK
        V DLLGI DRRRGRSK
Subjt:  VMDLLGISDRRRGRSK

TrEMBL top hitse value%identityAlignment
A0A1Q1AM96 Ribosomal protein S122.1e-3868.42Show/hide
Query:  MLTLSQLIRHGREEKRLTDSTRASNQC--------------PKKPNSTPRKIAKVRLSNRHDIFTHILGEGHNLQEHSMVLTRGGRVKDLPGVKSHFILG
        M T +QLIRHGREEKR TD TRAS+QC              PKKPNS PRKIAKVRLSNRHDIF HI GEGHNLQEHSMVL RGGRVKDLPGVKSH I G
Subjt:  MLTLSQLIRHGREEKRLTDSTRASNQC--------------PKKPNSTPRKIAKVRLSNRHDIFTHILGEGHNLQEHSMVLTRGGRVKDLPGVKSHFILG

Query:  VMDLLGISDRRRGRSKIWYSLTCIPIHCKKNLI
        V DLLGI DRRRGRSK       I +    NL+
Subjt:  VMDLLGISDRRRGRSKIWYSLTCIPIHCKKNLI

A0A445BHX1 Uncharacterized protein1.2e-3876.72Show/hide
Query:  MLTLSQLIRHGREEKRLTDSTRASNQC--------------PKKPNSTPRKIAKVRLSNRHDIFTHILGEGHNLQEHSMVLTRGGRVKDLPGVKSHFILG
        M TL+QLIRHGREEKR TD TRAS+QC              PKKPNS PRKIAKVRLSNRHDIF HILGEGHN QEHSMVL RGGRVKDLPGVKSH I G
Subjt:  MLTLSQLIRHGREEKRLTDSTRASNQC--------------PKKPNSTPRKIAKVRLSNRHDIFTHILGEGHNLQEHSMVLTRGGRVKDLPGVKSHFILG

Query:  VMDLLGISDRRRGRSK
        V DLLGI DRRRGRSK
Subjt:  VMDLLGISDRRRGRSK

A0A6H0AJV7 Ribosomal protein S121.6e-3876.72Show/hide
Query:  MLTLSQLIRHGREEKRLTDSTRASNQC--------------PKKPNSTPRKIAKVRLSNRHDIFTHILGEGHNLQEHSMVLTRGGRVKDLPGVKSHFILG
        M TL+QLIRHGREEKR TD TRAS+QC              PKKPNS PRKIAKVRLSNRHDIF HI GEGHNLQEHSMVL RGGRVKDLPGVKSH I G
Subjt:  MLTLSQLIRHGREEKRLTDSTRASNQC--------------PKKPNSTPRKIAKVRLSNRHDIFTHILGEGHNLQEHSMVLTRGGRVKDLPGVKSHFILG

Query:  VMDLLGISDRRRGRSK
        V DLLGI DRRRGRSK
Subjt:  VMDLLGISDRRRGRSK

A0A7L7T789 Ribosomal protein S121.6e-3876.72Show/hide
Query:  MLTLSQLIRHGREEKRLTDSTRASNQC--------------PKKPNSTPRKIAKVRLSNRHDIFTHILGEGHNLQEHSMVLTRGGRVKDLPGVKSHFILG
        M TL+QLIRHGREEKR TD TRAS+QC              PKKPNS PRKIAKVRLSNRHDIF HI GEGHNLQEHSMVL RGGRVKDLPGVKSH I G
Subjt:  MLTLSQLIRHGREEKRLTDSTRASNQC--------------PKKPNSTPRKIAKVRLSNRHDIFTHILGEGHNLQEHSMVLTRGGRVKDLPGVKSHFILG

Query:  VMDLLGISDRRRGRSK
        V DLLGI DRRRGRSK
Subjt:  VMDLLGISDRRRGRSK

Q7YEU1 Ribosomal protein S122.1e-3875.86Show/hide
Query:  MLTLSQLIRHGREEKRLTDSTRASNQC--------------PKKPNSTPRKIAKVRLSNRHDIFTHILGEGHNLQEHSMVLTRGGRVKDLPGVKSHFILG
        M TL+QLIRHGREEKR TD TRAS+QC              PKKPNS PRKIAKVRLSNRHDIF HI GEGHN QEHSMVL RGGRVKDLPGVKSH+I G
Subjt:  MLTLSQLIRHGREEKRLTDSTRASNQC--------------PKKPNSTPRKIAKVRLSNRHDIFTHILGEGHNLQEHSMVLTRGGRVKDLPGVKSHFILG

Query:  VMDLLGISDRRRGRSK
        V DLLGI DRRRGRSK
Subjt:  VMDLLGISDRRRGRSK

SwissProt top hitse value%identityAlignment
P27070 Ribosomal protein S12, mitochondrial3.1e-3974.14Show/hide
Query:  MLTLSQLIRHGREEKRLTDSTRASNQC--------------PKKPNSTPRKIAKVRLSNRHDIFTHILGEGHNLQEHSMVLTRGGRVKDLPGVKSHFILG
        M TL+QLIRHGREEKR TD TRAS+QC              PKKPNS PRKIAKVRL+NRHDIF HI GEGHN QEHSMVL RGGRVKD PGVKSH I G
Subjt:  MLTLSQLIRHGREEKRLTDSTRASNQC--------------PKKPNSTPRKIAKVRLSNRHDIFTHILGEGHNLQEHSMVLTRGGRVKDLPGVKSHFILG

Query:  VMDLLGISDRRRGRSK
        V DLLGI DRRRGRSK
Subjt:  VMDLLGISDRRRGRSK

P60096 Ribosomal protein S12, mitochondrial2.0e-3873.28Show/hide
Query:  MLTLSQLIRHGREEKRLTDSTRASNQC--------------PKKPNSTPRKIAKVRLSNRHDIFTHILGEGHNLQEHSMVLTRGGRVKDLPGVKSHFILG
        M TL+QLIRHGREEKR TD TRAS+QC              PKKPNS PRKIAKVRLSNRHDIF HI GEGHN QEH MVL RGGRVKD PGVKSH I G
Subjt:  MLTLSQLIRHGREEKRLTDSTRASNQC--------------PKKPNSTPRKIAKVRLSNRHDIFTHILGEGHNLQEHSMVLTRGGRVKDLPGVKSHFILG

Query:  VMDLLGISDRRRGRSK
        V DLLGI +RRRGRSK
Subjt:  VMDLLGISDRRRGRSK

P60097 Ribosomal protein S12, mitochondrial2.0e-3873.28Show/hide
Query:  MLTLSQLIRHGREEKRLTDSTRASNQC--------------PKKPNSTPRKIAKVRLSNRHDIFTHILGEGHNLQEHSMVLTRGGRVKDLPGVKSHFILG
        M TL+QLIRHGREEKR TD TRAS+QC              PKKPNS PRKIAKVRLSNRHDIF HI GEGHN QEH MVL RGGRVKD PGVKSH I G
Subjt:  MLTLSQLIRHGREEKRLTDSTRASNQC--------------PKKPNSTPRKIAKVRLSNRHDIFTHILGEGHNLQEHSMVLTRGGRVKDLPGVKSHFILG

Query:  VMDLLGISDRRRGRSK
        V DLLGI +RRRGRSK
Subjt:  VMDLLGISDRRRGRSK

P68535 Ribosomal protein S12, mitochondrial3.1e-3974.14Show/hide
Query:  MLTLSQLIRHGREEKRLTDSTRASNQC--------------PKKPNSTPRKIAKVRLSNRHDIFTHILGEGHNLQEHSMVLTRGGRVKDLPGVKSHFILG
        M +L+QLIRHGREEKR TD TRA +QC              PKKPNS PRKIAKVRLSNRHDIF HI GEGHNLQEHSMVL RGGRVKD PGVKSH I G
Subjt:  MLTLSQLIRHGREEKRLTDSTRASNQC--------------PKKPNSTPRKIAKVRLSNRHDIFTHILGEGHNLQEHSMVLTRGGRVKDLPGVKSHFILG

Query:  VMDLLGISDRRRGRSK
        V DLLGI DRRRGRSK
Subjt:  VMDLLGISDRRRGRSK

P68536 Ribosomal protein S12, mitochondrial3.1e-3974.14Show/hide
Query:  MLTLSQLIRHGREEKRLTDSTRASNQC--------------PKKPNSTPRKIAKVRLSNRHDIFTHILGEGHNLQEHSMVLTRGGRVKDLPGVKSHFILG
        M +L+QLIRHGREEKR TD TRA +QC              PKKPNS PRKIAKVRLSNRHDIF HI GEGHNLQEHSMVL RGGRVKD PGVKSH I G
Subjt:  MLTLSQLIRHGREEKRLTDSTRASNQC--------------PKKPNSTPRKIAKVRLSNRHDIFTHILGEGHNLQEHSMVLTRGGRVKDLPGVKSHFILG

Query:  VMDLLGISDRRRGRSK
        V DLLGI DRRRGRSK
Subjt:  VMDLLGISDRRRGRSK

Arabidopsis top hitse value%identityAlignment
AT2G07675.1 Ribosomal protein S12/S23 family protein1.7e-3769.83Show/hide
Query:  MLTLSQLIRHGREEKRLTDSTRASNQC--------------PKKPNSTPRKIAKVRLSNRHDIFTHILGEGHNLQEHSMVLTRGGRVKDLPGVKSHFILG
        M T +QLIRHGREEKR TD TRA ++C              PKKPNS PRKIAKVRLSNRHDIF HI GEGHN QEHS VL RGGRVKD PGVKSH I G
Subjt:  MLTLSQLIRHGREEKRLTDSTRASNQC--------------PKKPNSTPRKIAKVRLSNRHDIFTHILGEGHNLQEHSMVLTRGGRVKDLPGVKSHFILG

Query:  VMDLLGISDRRRGRSK
        V DL+GI  RRRGRSK
Subjt:  VMDLLGISDRRRGRSK

ATCG00065.1 ribosomal protein S12A3.2e-2348.28Show/hide
Query:  MLTLSQLIRHGREEKRLTDSTRASNQC--------------PKKPNSTPRKIAKVRLSNRHDIFTHILGEGHNLQEHSMVLTRGGRVKDLPGVKSHFILG
        M T+ QLIR+ R+  R    + A   C              PKKPNS  RK+A+VRL++  +I  +I G GHNLQEHS+VL RGGRVKDLPGV+ H + G
Subjt:  MLTLSQLIRHGREEKRLTDSTRASNQC--------------PKKPNSTPRKIAKVRLSNRHDIFTHILGEGHNLQEHSMVLTRGGRVKDLPGVKSHFILG

Query:  VMDLLGISDRRRGRSK
         +D +G+ DR++GRSK
Subjt:  VMDLLGISDRRRGRSK

ATCG00905.1 ribosomal protein S12C3.2e-2348.28Show/hide
Query:  MLTLSQLIRHGREEKRLTDSTRASNQC--------------PKKPNSTPRKIAKVRLSNRHDIFTHILGEGHNLQEHSMVLTRGGRVKDLPGVKSHFILG
        M T+ QLIR+ R+  R    + A   C              PKKPNS  RK+A+VRL++  +I  +I G GHNLQEHS+VL RGGRVKDLPGV+ H + G
Subjt:  MLTLSQLIRHGREEKRLTDSTRASNQC--------------PKKPNSTPRKIAKVRLSNRHDIFTHILGEGHNLQEHSMVLTRGGRVKDLPGVKSHFILG

Query:  VMDLLGISDRRRGRSK
         +D +G+ DR++GRSK
Subjt:  VMDLLGISDRRRGRSK

ATCG01230.1 ribosomal protein S12B3.2e-2348.28Show/hide
Query:  MLTLSQLIRHGREEKRLTDSTRASNQC--------------PKKPNSTPRKIAKVRLSNRHDIFTHILGEGHNLQEHSMVLTRGGRVKDLPGVKSHFILG
        M T+ QLIR+ R+  R    + A   C              PKKPNS  RK+A+VRL++  +I  +I G GHNLQEHS+VL RGGRVKDLPGV+ H + G
Subjt:  MLTLSQLIRHGREEKRLTDSTRASNQC--------------PKKPNSTPRKIAKVRLSNRHDIFTHILGEGHNLQEHSMVLTRGGRVKDLPGVKSHFILG

Query:  VMDLLGISDRRRGRSK
         +D +G+ DR++GRSK
Subjt:  VMDLLGISDRRRGRSK

ATMG00980.1 Ribosomal protein S12/S23 family protein1.7e-3769.83Show/hide
Query:  MLTLSQLIRHGREEKRLTDSTRASNQC--------------PKKPNSTPRKIAKVRLSNRHDIFTHILGEGHNLQEHSMVLTRGGRVKDLPGVKSHFILG
        M T +QLIRHGREEKR TD TRA ++C              PKKPNS PRKIAKVRLSNRHDIF HI GEGHN QEHS VL RGGRVKD PGVKSH I G
Subjt:  MLTLSQLIRHGREEKRLTDSTRASNQC--------------PKKPNSTPRKIAKVRLSNRHDIFTHILGEGHNLQEHSMVLTRGGRVKDLPGVKSHFILG

Query:  VMDLLGISDRRRGRSK
        V DL+GI  RRRGRSK
Subjt:  VMDLLGISDRRRGRSK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTACATTAAGTCAATTGATTCGTCATGGTAGAGAAGAAAAACGGCTTACGGACAGTACTCGAGCTTCAAATCAATGTCCCAAGAAACCTAATTCAACTCCACGTAA
GATAGCCAAAGTACGGTTGAGCAATCGACATGATATATTTACTCACATTCTGGGAGAAGGTCATAATTTGCAGGAACATTCTATGGTGTTAACAAGAGGAGGTAGAGTGA
AAGATTTGCCAGGTGTGAAATCCCATTTTATTCTAGGAGTCATGGATTTACTAGGAATTTCGGATCGAAGAAGAGGCAGATCTAAAATATGGTATTCTTTAACTTGCATA
CCGATCCATTGCAAGAAAAACCTAATCGATAATGAATTGCAAGATGCCTTTCTTCCA
mRNA sequenceShow/hide mRNA sequence
ATGCTTACATTAAGTCAATTGATTCGTCATGGTAGAGAAGAAAAACGGCTTACGGACAGTACTCGAGCTTCAAATCAATGTCCCAAGAAACCTAATTCAACTCCACGTAA
GATAGCCAAAGTACGGTTGAGCAATCGACATGATATATTTACTCACATTCTGGGAGAAGGTCATAATTTGCAGGAACATTCTATGGTGTTAACAAGAGGAGGTAGAGTGA
AAGATTTGCCAGGTGTGAAATCCCATTTTATTCTAGGAGTCATGGATTTACTAGGAATTTCGGATCGAAGAAGAGGCAGATCTAAAATATGGTATTCTTTAACTTGCATA
CCGATCCATTGCAAGAAAAACCTAATCGATAATGAATTGCAAGATGCCTTTCTTCCA
Protein sequenceShow/hide protein sequence
MLTLSQLIRHGREEKRLTDSTRASNQCPKKPNSTPRKIAKVRLSNRHDIFTHILGEGHNLQEHSMVLTRGGRVKDLPGVKSHFILGVMDLLGISDRRRGRSKIWYSLTCI
PIHCKKNLIDNELQDAFLP