; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg28266 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg28266
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionChaperone protein ClpB
Genome locationCarg_Chr01:4310410..4312881
RNA-Seq ExpressionCarg28266
SyntenyCarg28266
Gene Ontology termsGO:0006364 - rRNA processing (biological process)
GO:0034605 - cellular response to heat (biological process)
GO:0005730 - nucleolus (cellular component)
GO:0005829 - cytosol (cellular component)
GO:0009570 - chloroplast stroma (cellular component)
GO:0005524 - ATP binding (molecular function)
GO:0016887 - ATPase activity (molecular function)
InterPro domainsIPR003959 - ATPase, AAA-type, core
IPR027417 - P-loop containing nucleoside triphosphate hydrolase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7037090.1 Chaperone protein ClpB1, partial [Cucurbita argyrosperma subsp. argyrosperma]6.9e-72100Show/hide
Query:  MLSNLHILIIISAVRIVWRRTKNNRVVIGEADVGKTAVIEGLAQRIVRGDVPSNLIDVMRLIALDMVAGAKYRGEFEERSKAVLKEVEDVEGGKVILFID
        MLSNLHILIIISAVRIVWRRTKNNRVVIGEADVGKTAVIEGLAQRIVRGDVPSNLIDVMRLIALDMVAGAKYRGEFEERSKAVLKEVEDVEGGKVILFID
Subjt:  MLSNLHILIIISAVRIVWRRTKNNRVVIGEADVGKTAVIEGLAQRIVRGDVPSNLIDVMRLIALDMVAGAKYRGEFEERSKAVLKEVEDVEGGKVILFID

Query:  EIHLVLGAGRTEDESAHGKKIPAKGEKKGEKKENTRETPPRNKLPNQIS
        EIHLVLGAGRTEDESAHGKKIPAKGEKKGEKKENTRETPPRNKLPNQIS
Subjt:  EIHLVLGAGRTEDESAHGKKIPAKGEKKGEKKENTRETPPRNKLPNQIS

KAG7037141.1 Chaperone protein ClpB1, partial [Cucurbita argyrosperma subsp. argyrosperma]2.2e-3386.27Show/hide
Query:  VRIVWRRTKNNRVVIGEADVGKTAVIEGLAQRIVRGDVPSNLIDVMRLIALDM---VAGAKYRGEFEERSKAVLKEVEDVEGGKVILFIDEIHLVLGAGR
        VRI+ RRTKNN V+IGE  VGKTAV+EGLAQRIVRGDVPSNLIDV RLIALDM   VAGAKYRGEFEER KAVLKEVED E GKVILFIDEIHLVLGAGR
Subjt:  VRIVWRRTKNNRVVIGEADVGKTAVIEGLAQRIVRGDVPSNLIDVMRLIALDM---VAGAKYRGEFEERSKAVLKEVEDVEGGKVILFIDEIHLVLGAGR

Query:  TE
        TE
Subjt:  TE

XP_022948754.1 chaperone protein ClpB1 [Cucurbita moschata]2.2e-3386.27Show/hide
Query:  VRIVWRRTKNNRVVIGEADVGKTAVIEGLAQRIVRGDVPSNLIDVMRLIALDM---VAGAKYRGEFEERSKAVLKEVEDVEGGKVILFIDEIHLVLGAGR
        VRI+ RRTKNN V+IGE  VGKTAV+EGLAQRIVRGDVPSNLIDV RLIALDM   VAGAKYRGEFEER KAVLKEVED E GKVILFIDEIHLVLGAGR
Subjt:  VRIVWRRTKNNRVVIGEADVGKTAVIEGLAQRIVRGDVPSNLIDVMRLIALDM---VAGAKYRGEFEERSKAVLKEVEDVEGGKVILFIDEIHLVLGAGR

Query:  TE
        TE
Subjt:  TE

XP_022949085.1 chaperone protein ClpB1-like [Cucurbita moschata]1.5e-4290.18Show/hide
Query:  LHILIIISAVRIVWRRTKNNRVVIGEADVGKTAVIEGLAQRIVRGDVPSNLIDVMRLIALDM---VAGAKYRGEFEERSKAVLKEVEDVEGGKVILFIDE
        LH   I SAVRIVWRRTKNNRVVIGEA VGKTAVIEGLAQRIVRGDVPSNLIDVMRLIALDM   VAGAKYRGEFEERSKAV+KEVEDVEGG VILFIDE
Subjt:  LHILIIISAVRIVWRRTKNNRVVIGEADVGKTAVIEGLAQRIVRGDVPSNLIDVMRLIALDM---VAGAKYRGEFEERSKAVLKEVEDVEGGKVILFIDE

Query:  IHLVLGAGRTED
        IHLVLGAGRTE+
Subjt:  IHLVLGAGRTED

XP_023524480.1 chaperone protein ClpB1 [Cucurbita pepo subsp. pepo]2.2e-3386.27Show/hide
Query:  VRIVWRRTKNNRVVIGEADVGKTAVIEGLAQRIVRGDVPSNLIDVMRLIALDM---VAGAKYRGEFEERSKAVLKEVEDVEGGKVILFIDEIHLVLGAGR
        VRI+ RRTKNN V+IGE  VGKTAV+EGLAQRIVRGDVPSNLIDV RLIALDM   VAGAKYRGEFEER KAVLKEVED E GKVILFIDEIHLVLGAGR
Subjt:  VRIVWRRTKNNRVVIGEADVGKTAVIEGLAQRIVRGDVPSNLIDVMRLIALDM---VAGAKYRGEFEERSKAVLKEVEDVEGGKVILFIDEIHLVLGAGR

Query:  TE
        TE
Subjt:  TE

TrEMBL top hitse value%identityAlignment
A0A0A0LQL1 Clp R domain-containing protein4.0e-3385.29Show/hide
Query:  VRIVWRRTKNNRVVIGEADVGKTAVIEGLAQRIVRGDVPSNLIDVMRLIALDM---VAGAKYRGEFEERSKAVLKEVEDVEGGKVILFIDEIHLVLGAGR
        VRI+ RRTKNN V+IGE  VGKTAV+EGLAQRIVRGDVPSNL DV RLIALDM   VAGAKYRGEFEER KAVLKEVED E GKVILFIDEIHLVLGAGR
Subjt:  VRIVWRRTKNNRVVIGEADVGKTAVIEGLAQRIVRGDVPSNLIDVMRLIALDM---VAGAKYRGEFEERSKAVLKEVEDVEGGKVILFIDEIHLVLGAGR

Query:  TE
        TE
Subjt:  TE

A0A2P2JRF2 Clp R domain-containing protein4.0e-3384.31Show/hide
Query:  VRIVWRRTKNNRVVIGEADVGKTAVIEGLAQRIVRGDVPSNLIDVMRLIALDM---VAGAKYRGEFEERSKAVLKEVEDVEGGKVILFIDEIHLVLGAGR
        VRI+ RRTKNN V+IGE  VGKTAV+EGLAQRIVRGDVPSNL+DV RLIALDM   VAGAKYRGEFEER KAVLKEVE+ E GKVILFIDEIHLVLGAGR
Subjt:  VRIVWRRTKNNRVVIGEADVGKTAVIEGLAQRIVRGDVPSNLIDVMRLIALDM---VAGAKYRGEFEERSKAVLKEVEDVEGGKVILFIDEIHLVLGAGR

Query:  TE
        TE
Subjt:  TE

A0A6J1GAV2 chaperone protein ClpB11.0e-3386.27Show/hide
Query:  VRIVWRRTKNNRVVIGEADVGKTAVIEGLAQRIVRGDVPSNLIDVMRLIALDM---VAGAKYRGEFEERSKAVLKEVEDVEGGKVILFIDEIHLVLGAGR
        VRI+ RRTKNN V+IGE  VGKTAV+EGLAQRIVRGDVPSNLIDV RLIALDM   VAGAKYRGEFEER KAVLKEVED E GKVILFIDEIHLVLGAGR
Subjt:  VRIVWRRTKNNRVVIGEADVGKTAVIEGLAQRIVRGDVPSNLIDVMRLIALDM---VAGAKYRGEFEERSKAVLKEVEDVEGGKVILFIDEIHLVLGAGR

Query:  TE
        TE
Subjt:  TE

A0A6J1GBS8 chaperone protein ClpB1-like7.2e-4390.18Show/hide
Query:  LHILIIISAVRIVWRRTKNNRVVIGEADVGKTAVIEGLAQRIVRGDVPSNLIDVMRLIALDM---VAGAKYRGEFEERSKAVLKEVEDVEGGKVILFIDE
        LH   I SAVRIVWRRTKNNRVVIGEA VGKTAVIEGLAQRIVRGDVPSNLIDVMRLIALDM   VAGAKYRGEFEERSKAV+KEVEDVEGG VILFIDE
Subjt:  LHILIIISAVRIVWRRTKNNRVVIGEADVGKTAVIEGLAQRIVRGDVPSNLIDVMRLIALDM---VAGAKYRGEFEERSKAVLKEVEDVEGGKVILFIDE

Query:  IHLVLGAGRTED
        IHLVLGAGRTE+
Subjt:  IHLVLGAGRTED

A0A6J1KFF5 chaperone protein ClpB11.0e-3386.27Show/hide
Query:  VRIVWRRTKNNRVVIGEADVGKTAVIEGLAQRIVRGDVPSNLIDVMRLIALDM---VAGAKYRGEFEERSKAVLKEVEDVEGGKVILFIDEIHLVLGAGR
        VRI+ RRTKNN V+IGE  VGKTAV+EGLAQRIVRGDVPSNLIDV RLIALDM   VAGAKYRGEFEER KAVLKEVED E GKVILFIDEIHLVLGAGR
Subjt:  VRIVWRRTKNNRVVIGEADVGKTAVIEGLAQRIVRGDVPSNLIDVMRLIALDM---VAGAKYRGEFEERSKAVLKEVEDVEGGKVILFIDEIHLVLGAGR

Query:  TE
        TE
Subjt:  TE

SwissProt top hitse value%identityAlignment
P42730 Chaperone protein ClpB12.2e-3379.41Show/hide
Query:  VRIVWRRTKNNRVVIGEADVGKTAVIEGLAQRIVRGDVPSNLIDVMRLIALDM---VAGAKYRGEFEERSKAVLKEVEDVEGGKVILFIDEIHLVLGAGR
        VRI+ RRTKNN V+IGE  VGKTAV+EGLAQRIV+GDVP++L DV RLI+LDM   VAGAKYRGEFEER K+VLKEVED E GKVILFIDEIHLVLGAG+
Subjt:  VRIVWRRTKNNRVVIGEADVGKTAVIEGLAQRIVRGDVPSNLIDVMRLIALDM---VAGAKYRGEFEERSKAVLKEVEDVEGGKVILFIDEIHLVLGAGR

Query:  TE
        TE
Subjt:  TE

Q6F2Y7 Chaperone protein ClpB11.4e-3584.31Show/hide
Query:  VRIVWRRTKNNRVVIGEADVGKTAVIEGLAQRIVRGDVPSNLIDVMRLIALDM---VAGAKYRGEFEERSKAVLKEVEDVEGGKVILFIDEIHLVLGAGR
        VRI+ RRTKNN V+IGE  VGKTAV+EGLAQRIVRGDVPSNL+DV RLIALDM   VAGAKYRGEFEER KAVLKEVE+ E GKVILFIDEIHLVLGAGR
Subjt:  VRIVWRRTKNNRVVIGEADVGKTAVIEGLAQRIVRGDVPSNLIDVMRLIALDM---VAGAKYRGEFEERSKAVLKEVEDVEGGKVILFIDEIHLVLGAGR

Query:  TE
        TE
Subjt:  TE

Q88VX7 Chaperone protein ClpB1.3e-2859.35Show/hide
Query:  IISAVRIVWRRTKNNRVVIGEADVGKTAVIEGLAQRIVRGDVPSNLIDVMRLIALDM---VAGAKYRGEFEERSKAVLKEVEDVEGGKVILFIDEIHLVL
        I+  +RI+ R+TKNN V+IGE  VGKTA++EGLAQRIVRGDVP NL D   L +LDM   +AGAKYRGEFEER KAVLKE++  + G++I+FIDEIH ++
Subjt:  IISAVRIVWRRTKNNRVVIGEADVGKTAVIEGLAQRIVRGDVPSNLIDVMRLIALDM---VAGAKYRGEFEERSKAVLKEVEDVEGGKVILFIDEIHLVL

Query:  GAGRTEDESAHG---KKIPAKGE
        GAG+TE     G   K + A+GE
Subjt:  GAGRTEDESAHG---KKIPAKGE

Q8XKG8 Chaperone protein ClpB9.8e-2960.83Show/hide
Query:  AVRIVWRRTKNNRVVIGEADVGKTAVIEGLAQRIVRGDVPSNLIDVMRLIALDM---VAGAKYRGEFEERSKAVLKEVEDVEGGKVILFIDEIHLVLGAG
        AVRI+ R+TKNN ++IGE  VGKTA++EGLA+RIVRGDVP  L D + +I+LDM   +AGAKYRGEFEER KAVLKEV+  E GK++LFIDEIH ++GAG
Subjt:  AVRIVWRRTKNNRVVIGEADVGKTAVIEGLAQRIVRGDVPSNLIDVMRLIALDM---VAGAKYRGEFEERSKAVLKEVEDVEGGKVILFIDEIHLVLGAG

Query:  RTEDESAHG---KKIPAKGE
        +T+     G   K + A+GE
Subjt:  RTEDESAHG---KKIPAKGE

Q97KG0 Chaperone protein ClpB2.2e-2863.03Show/hide
Query:  VRIVWRRTKNNRVVIGEADVGKTAVIEGLAQRIVRGDVPSNLIDVMRLIALDM---VAGAKYRGEFEERSKAVLKEVEDVEGGKVILFIDEIHLVLGAGR
        +RI+ RRTKNN V+IGE  VGKTA++EGLA+RIVRGDVP  L + + + +LDM   VAGAKYRGEFEER KAVLKEVE  E GK+ILFIDEIH ++GAG+
Subjt:  VRIVWRRTKNNRVVIGEADVGKTAVIEGLAQRIVRGDVPSNLIDVMRLIALDM---VAGAKYRGEFEERSKAVLKEVEDVEGGKVILFIDEIHLVLGAGR

Query:  TEDESAHG---KKIPAKGE
        TE     G   K + A+GE
Subjt:  TEDESAHG---KKIPAKGE

Arabidopsis top hitse value%identityAlignment
AT1G74310.1 heat shock protein 1011.6e-3479.41Show/hide
Query:  VRIVWRRTKNNRVVIGEADVGKTAVIEGLAQRIVRGDVPSNLIDVMRLIALDM---VAGAKYRGEFEERSKAVLKEVEDVEGGKVILFIDEIHLVLGAGR
        VRI+ RRTKNN V+IGE  VGKTAV+EGLAQRIV+GDVP++L DV RLI+LDM   VAGAKYRGEFEER K+VLKEVED E GKVILFIDEIHLVLGAG+
Subjt:  VRIVWRRTKNNRVVIGEADVGKTAVIEGLAQRIVRGDVPSNLIDVMRLIALDM---VAGAKYRGEFEERSKAVLKEVEDVEGGKVILFIDEIHLVLGAGR

Query:  TE
        TE
Subjt:  TE

AT2G25140.1 casein lytic proteinase B46.1e-2657.98Show/hide
Query:  VRIVWRRTKNNRVVIGEADVGKTAVIEGLAQRIVRGDVPSNLIDVMRLIALDM---VAGAKYRGEFEERSKAVLKEVEDVEGGKVILFIDEIHLVLGAGR
        ++I+ RRTKNN V+IGE  VGKTA+ EGLAQRIVRGDVP  L++  +LI+LDM   +AGAK+RG+FEER KAV+KEV     G+ ILFIDEIH V+GAG 
Subjt:  VRIVWRRTKNNRVVIGEADVGKTAVIEGLAQRIVRGDVPSNLIDVMRLIALDM---VAGAKYRGEFEERSKAVLKEVEDVEGGKVILFIDEIHLVLGAGR

Query:  TE---DESAHGKKIPAKGE
         +   D S   K +  +GE
Subjt:  TE---DESAHGKKIPAKGE

AT4G14670.1 casein lytic proteinase B23.9e-2563.27Show/hide
Query:  VRIVWRRTKNNRVVIGEADVGKTAVIEGLAQRIVRGDVPSNLIDVMRLIALD---MVAGAKYRGEFEERSKAVLKEVEDVEGGKVILFIDEIHLVLGA
        + ++ RRTKNN V+IGE  VGKTAV+EGLAQRI++GDVP NL  V +LI+L+   MVAG   RG+FEER K+VLK VE+ + GKV+LFIDEIH+ LGA
Subjt:  VRIVWRRTKNNRVVIGEADVGKTAVIEGLAQRIVRGDVPSNLIDVMRLIALD---MVAGAKYRGEFEERSKAVLKEVEDVEGGKVILFIDEIHLVLGA

AT5G15450.1 casein lytic proteinase B35.0e-2867.33Show/hide
Query:  VRIVWRRTKNNRVVIGEADVGKTAVIEGLAQRIVRGDVPSNLIDVMRLIALDM---VAGAKYRGEFEERSKAVLKEVEDVEGGKVILFIDEIHLVLGAGR
        ++I+ RRTKNN V+IGE  VGKTA+ EGLAQRIV+GDVP  L++  +LI+LDM   +AGAKYRGEFE+R KAVLKEV D E G++ILFIDEIH V+GAG 
Subjt:  VRIVWRRTKNNRVVIGEADVGKTAVIEGLAQRIVRGDVPSNLIDVMRLIALDM---VAGAKYRGEFEERSKAVLKEVEDVEGGKVILFIDEIHLVLGAGR

Query:  T
        T
Subjt:  T

AT5G50920.1 CLPC homologue 18.2e-2355.88Show/hide
Query:  VRIVWRRTKNNRVVIGEADVGKTAVIEGLAQRIVRGDVPSNLIDVMRLIALDM---VAGAKYRGEFEERSKAVLKEVEDVEGGKVILFIDEIHLVLGAGR
        V+I+ RRTKNN  +IGE  VGKTA+ EGLAQRI  GDVP   I+  ++I LDM   VAG KYRGEFEER K +++E+   +  ++ILFIDE+H ++GAG 
Subjt:  VRIVWRRTKNNRVVIGEADVGKTAVIEGLAQRIVRGDVPSNLIDVMRLIALDM---VAGAKYRGEFEERSKAVLKEVEDVEGGKVILFIDEIHLVLGAGR

Query:  TE
         E
Subjt:  TE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTAAGTAATCTTCACATTCTCATTATTATCAGTGCGGTGAGAATTGTATGGAGAAGGACTAAGAACAACCGAGTTGTTATTGGGGAGGCTGATGTTGGAAAAACTGC
AGTGATTGAAGGATTGGCACAAAGAATTGTAAGAGGGGATGTTCCAAGTAATCTTATTGATGTGATGAGGCTCATAGCTTTGGATATGGTTGCGGGTGCTAAGTACAGGG
GAGAGTTTGAAGAGAGATCGAAGGCTGTATTGAAGGAAGTTGAAGATGTAGAGGGGGGGAAGGTCATACTGTTTATCGATGAGATTCATCTTGTTCTTGGTGCTGGAAGA
ACAGAGGATGAGTCAGCTCATGGAAAGAAAATACCTGCAAAAGGAGAAAAGAAAGGAGAAAAGAAAGAAAATACGAGAGAGACTCCACCTCGCAACAAATTACCTAATCA
AATAAGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTAAGTAATCTTCACATTCTCATTATTATCAGTGCGGTGAGAATTGTATGGAGAAGGACTAAGAACAACCGAGTTGTTATTGGGGAGGCTGATGTTGGAAAAACTGC
AGTGATTGAAGGATTGGCACAAAGAATTGTAAGAGGGGATGTTCCAAGTAATCTTATTGATGTGATGAGGCTCATAGCTTTGGATATGGTTGCGGGTGCTAAGTACAGGG
GAGAGTTTGAAGAGAGATCGAAGGCTGTATTGAAGGAAGTTGAAGATGTAGAGGGGGGGAAGGTCATACTGTTTATCGATGAGATTCATCTTGTTCTTGGTGCTGGAAGA
ACAGAGGATGAGTCAGCTCATGGAAAGAAAATACCTGCAAAAGGAGAAAAGAAAGGAGAAAAGAAAGAAAATACGAGAGAGACTCCACCTCGCAACAAATTACCTAATCA
AATAAGCTAG
Protein sequenceShow/hide protein sequence
MLSNLHILIIISAVRIVWRRTKNNRVVIGEADVGKTAVIEGLAQRIVRGDVPSNLIDVMRLIALDMVAGAKYRGEFEERSKAVLKEVEDVEGGKVILFIDEIHLVLGAGR
TEDESAHGKKIPAKGEKKGEKKENTRETPPRNKLPNQIS