; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg28267 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg28267
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationCarg_Chr17:4705086..4706722
RNA-Seq ExpressionCarg28267
SyntenyCarg28267
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575318.1 hypothetical protein SDJN03_25957, partial [Cucurbita argyrosperma subsp. sororia]1.1e-37100Show/hide
Query:  MENEELVILSKKDGECDIVGYEEVETQFQIKLHILPIFLKMASEDEKIWFYRTMNSHCGMFIPTFESLAHYDVIYFPRS
        MENEELVILSKKDGECDIVGYEEVETQFQIKLHILPIFLKMASEDEKIWFYRTMNSHCGMFIPTFESLAHYDVIYFPRS
Subjt:  MENEELVILSKKDGECDIVGYEEVETQFQIKLHILPIFLKMASEDEKIWFYRTMNSHCGMFIPTFESLAHYDVIYFPRS

KAG7013856.1 hypothetical protein SDJN02_24025, partial [Cucurbita argyrosperma subsp. argyrosperma]9.0e-141100Show/hide
Query:  MFLIRLDNFDPFMEAIIQMHQISKYADLKVSPLSFSTSVSHPTHGFAVKLHISPKFFANYSVDKHHRWRISLVSFQDAMFIARKRCLASMNLIFLQNMNQ
        MFLIRLDNFDPFMEAIIQMHQISKYADLKVSPLSFSTSVSHPTHGFAVKLHISPKFFANYSVDKHHRWRISLVSFQDAMFIARKRCLASMNLIFLQNMNQ
Subjt:  MFLIRLDNFDPFMEAIIQMHQISKYADLKVSPLSFSTSVSHPTHGFAVKLHISPKFFANYSVDKHHRWRISLVSFQDAMFIARKRCLASMNLIFLQNMNQ

Query:  LTLIFSTSRNADALQFGLELSPSQQEVDGGAVDFANFFSIYSKDLRRYILINYFPRDPACVTNVTVTNSQVKISMENEELVILSKKDGECDIVGYEEVET
        LTLIFSTSRNADALQFGLELSPSQQEVDGGAVDFANFFSIYSKDLRRYILINYFPRDPACVTNVTVTNSQVKISMENEELVILSKKDGECDIVGYEEVET
Subjt:  LTLIFSTSRNADALQFGLELSPSQQEVDGGAVDFANFFSIYSKDLRRYILINYFPRDPACVTNVTVTNSQVKISMENEELVILSKKDGECDIVGYEEVET

Query:  QFQIKLHILPIFLKMASEDEKIWFYRTMNSHCGMFIPTFESLAHYDVIYFPRS
        QFQIKLHILPIFLKMASEDEKIWFYRTMNSHCGMFIPTFESLAHYDVIYFPRS
Subjt:  QFQIKLHILPIFLKMASEDEKIWFYRTMNSHCGMFIPTFESLAHYDVIYFPRS

XP_022958857.1 uncharacterized protein LOC111460011 [Cucurbita moschata]3.9e-3542.06Show/hide
Query:  MFLIRLDNFDPFMEAIIQMHQISKYADLKVSPLSFSTSVSHPTHGFAVKLHISPKFFANYSVDKHHRWRISLVSFQDAMFIARKRCLASMNLIFLQNMNQ
        MFL+RL +FDP MEA   + QIS  ADLK S   FS   S+P+H F     IS +FFANY VD++H  R+SL SF +AM+       +SM + F +  ++
Subjt:  MFLIRLDNFDPFMEAIIQMHQISKYADLKVSPLSFSTSVSHPTHGFAVKLHISPKFFANYSVDKHHRWRISLVSFQDAMFIARKRCLASMNLIFLQNMNQ

Query:  LTLIFSTSRNAD-ALQFGLELSPSQQEVDGGAVDFANFFSIYSKDLRRYILINYFPRDPACVTNVTVTNSQVKISMENEELVILSKKDGECDIVGYE-EV
        + L F +S +    +   L+LSPSQ+E + G +    FFSI S+D R   +I   P  P     V++T+S+VK    +EE  IL+K+ G C IVGYE + 
Subjt:  LTLIFSTSRNAD-ALQFGLELSPSQQEVDGGAVDFANFFSIYSKDLRRYILINYFPRDPACVTNVTVTNSQVKISMENEELVILSKKDGECDIVGYE-EV

Query:  ETQFQIKLHILPIFLKMASEDEKIWFYRTMNSHCGMFIPTFESLAHYDVIYF
        E  FQI L+    F  ++    +IWFY+T++S C +FIP F   A Y VIYF
Subjt:  ETQFQIKLHILPIFLKMASEDEKIWFYRTMNSHCGMFIPTFESLAHYDVIYF

XP_023006010.1 uncharacterized protein LOC111498887 [Cucurbita maxima]6.7e-3541.67Show/hide
Query:  MFLIRLDNFDPFMEAIIQMHQISKYADLKVSPLSFSTSVSHPTHGFAVKLHISPKFFANYSVDKHHRWRISLVSFQDAMFIARKRCLASMNLIFLQNMNQ
        MFL+RL +FDP  EA   + QIS  ADLK S   FS   S+P+  F     IS +FFANYSVD++H  R+SL SF DAM+       +SM + F +  ++
Subjt:  MFLIRLDNFDPFMEAIIQMHQISKYADLKVSPLSFSTSVSHPTHGFAVKLHISPKFFANYSVDKHHRWRISLVSFQDAMFIARKRCLASMNLIFLQNMNQ

Query:  LTLIFSTSRNAD-ALQFGLELSPSQQEVDGGAVDFANFFSIYSKDLRRYILINYFPRDPACVTNVTVTNSQVKISMENEELVILSKKDGECDIVGYE-EV
        + L F +S +    +   L+LSPSQ+E + G +    FFSI S+D R   +I   P  P     V++T+S+VK    +EE  IL+K+ G C I+GYE E 
Subjt:  LTLIFSTSRNAD-ALQFGLELSPSQQEVDGGAVDFANFFSIYSKDLRRYILINYFPRDPACVTNVTVTNSQVKISMENEELVILSKKDGECDIVGYE-EV

Query:  ETQFQIKLHILPIFLKMASEDEKIWFYRTMNSHCGMFIPTFESLAHYDVIYF
        E  FQI L+    F  ++    +IWFY+T++S C +F+P F   A Y VIYF
Subjt:  ETQFQIKLHILPIFLKMASEDEKIWFYRTMNSHCGMFIPTFESLAHYDVIYF

XP_031744160.1 uncharacterized protein LOC116404808 [Cucumis sativus]9.3e-3742.29Show/hide
Query:  MFLIRLDNFDPFMEAIIQMHQISKYADLKVSPLSFSTSVSHPTHGFAVKLHISPKFFANYSVDKHHRWRISLVSFQDAMFIARKRCLASMNLIFLQNMNQ
        MFL+RL NF+PF  A  ++  I++ AD+K +PL FS +VS+    F   L ++   F NY VD  H  RISL SF DA+         SM +  L N+NQ
Subjt:  MFLIRLDNFDPFMEAIIQMHQISKYADLKVSPLSFSTSVSHPTHGFAVKLHISPKFFANYSVDKHHRWRISLVSFQDAMFIARKRCLASMNLIFLQNMNQ

Query:  LTLIFSTSRNADALQFGLELSPSQQEVDGGAVDFANFFSIYSKDLRRYIL-INYFPRDPACVTNVTVTNSQVKISMENEELVILSKKDGECDIVGYE-EV
        + L F +S +A  ++  L L PSQ+E D G +D+A FFSI SK LRR I  +  F  D  C   VT T SQVK S+ ++E ++L+K++ EC IVGYE E 
Subjt:  LTLIFSTSRNADALQFGLELSPSQQEVDGGAVDFANFFSIYSKDLRRYIL-INYFPRDPACVTNVTVTNSQVKISMENEELVILSKKDGECDIVGYE-EV

Query:  ETQFQIKLHILPIFLKMASEDEKIWFYRTMNSHCGMFIPTFESLAHYDVIYFP
        ET+  I L+ +  FL    +  ++WFY+T   H  M +P+F   + Y VI FP
Subjt:  ETQFQIKLHILPIFLKMASEDEKIWFYRTMNSHCGMFIPTFESLAHYDVIYFP

TrEMBL top hitse value%identityAlignment
A0A1S3C8J1 uncharacterized protein LOC1034980101.1e-2739.01Show/hide
Query:  MFLIRLDNFDPFMEAIIQMHQISKYADLKVSPLSFSTSVSHPTHGFAVKLHISPKFFANYSVDKHHRWRISLVSFQDAMFIARKRCLASMNLIFLQNMNQ
        MFL+RL+ F+P ++A   + Q++K AD+K +PL     VS+ +  F   L +S + F N+SVD +   ++SL  F DAM        +SM +  L   NQ
Subjt:  MFLIRLDNFDPFMEAIIQMHQISKYADLKVSPLSFSTSVSHPTHGFAVKLHISPKFFANYSVDKHHRWRISLVSFQDAMFIARKRCLASMNLIFLQNMNQ

Query:  LTLIFST-SRNADALQFGLELSPSQQEVDGGAVDFANFFSIYSKDLRRYILINYFPRDPACVTNVTVTNSQVKISMENEELVILSKKDGECDIVGYE-EV
        + L F T S +   L   L LSP Q E + G V++ NFF++ S++LRR  +I   P       +VTVT SQVK S++++E +IL+K+ G C IVGYE EV
Subjt:  LTLIFST-SRNADALQFGLELSPSQQEVDGGAVDFANFFSIYSKDLRRYILINYFPRDPACVTNVTVTNSQVKISMENEELVILSKKDGECDIVGYE-EV

Query:  ETQFQIKLHILPIFLKMASEDEK
        ET+ Q+ L  +  FL       K
Subjt:  ETQFQIKLHILPIFLKMASEDEK

A0A1S3CL88 uncharacterized protein LOC1035022504.5e-2938.61Show/hide
Query:  MFLIRLDNFDPFMEAIIQMHQIS-KYADLKVSPLSFSTSVSHPTHGFAVKLHISPKFFANYSVDKHHRWRISLVSFQDAMFIARKRCLASMNLIFLQNMN
        MFL++L NFDP ++A   + QIS   ADLK +P  F    SH +  F   L +SP++F  +SVD  H  ++SL SF DA  I      ASM +  L   N
Subjt:  MFLIRLDNFDPFMEAIIQMHQIS-KYADLKVSPLSFSTSVSHPTHGFAVKLHISPKFFANYSVDKHHRWRISLVSFQDAMFIARKRCLASMNLIFLQNMN

Query:  QLTLIFST-SRNADALQFGLELSPSQQE---VDGGAVDFANFFSIYSKDLRRYIL-INYFPRDPACVTNVTVTNSQVKISMENEELVILSKKDGECDIVG
        Q+ L F T S     L   L LSP Q E   +    +D   +F + SK LRR I  +  F  D   + +V VTNS+VK S+ ++E+++   +   C I G
Subjt:  QLTLIFST-SRNADALQFGLELSPSQQE---VDGGAVDFANFFSIYSKDLRRYIL-INYFPRDPACVTNVTVTNSQVKISMENEELVILSKKDGECDIVG

Query:  Y-EEVETQFQIKLHILPIFLKMASEDEKIWFYRTM-NSHCGMFIPTFESLAHYDVIYFP
        + EEVETQFQI L  +  FL    +  ++WFY+T  N++  M +P +     Y VIYFP
Subjt:  Y-EEVETQFQIKLHILPIFLKMASEDEKIWFYRTM-NSHCGMFIPTFESLAHYDVIYFP

A0A6J1H2Z8 uncharacterized protein LOC1114600111.9e-3542.06Show/hide
Query:  MFLIRLDNFDPFMEAIIQMHQISKYADLKVSPLSFSTSVSHPTHGFAVKLHISPKFFANYSVDKHHRWRISLVSFQDAMFIARKRCLASMNLIFLQNMNQ
        MFL+RL +FDP MEA   + QIS  ADLK S   FS   S+P+H F     IS +FFANY VD++H  R+SL SF +AM+       +SM + F +  ++
Subjt:  MFLIRLDNFDPFMEAIIQMHQISKYADLKVSPLSFSTSVSHPTHGFAVKLHISPKFFANYSVDKHHRWRISLVSFQDAMFIARKRCLASMNLIFLQNMNQ

Query:  LTLIFSTSRNAD-ALQFGLELSPSQQEVDGGAVDFANFFSIYSKDLRRYILINYFPRDPACVTNVTVTNSQVKISMENEELVILSKKDGECDIVGYE-EV
        + L F +S +    +   L+LSPSQ+E + G +    FFSI S+D R   +I   P  P     V++T+S+VK    +EE  IL+K+ G C IVGYE + 
Subjt:  LTLIFSTSRNAD-ALQFGLELSPSQQEVDGGAVDFANFFSIYSKDLRRYILINYFPRDPACVTNVTVTNSQVKISMENEELVILSKKDGECDIVGYE-EV

Query:  ETQFQIKLHILPIFLKMASEDEKIWFYRTMNSHCGMFIPTFESLAHYDVIYF
        E  FQI L+    F  ++    +IWFY+T++S C +FIP F   A Y VIYF
Subjt:  ETQFQIKLHILPIFLKMASEDEKIWFYRTMNSHCGMFIPTFESLAHYDVIYF

A0A6J1KIW5 uncharacterized protein LOC1114948741.5e-2734.51Show/hide
Query:  MFLIRLDNFDPFMEAIIQMHQISKYADLKVSPLSFSTSVSHPTHGFAVKLHISPKFFANYSVDKHHRWRISLVSFQDAMFIARKRCLASMNLIFLQNMNQ
        MFL+RL NF P ++   ++ QI++ +D+  +PLS   + S P+  F   L I  + F  YSV+  H  RISL S  DA+        ++M +  L+N N 
Subjt:  MFLIRLDNFDPFMEAIIQMHQISKYADLKVSPLSFSTSVSHPTHGFAVKLHISPKFFANYSVDKHHRWRISLVSFQDAMFIARKRCLASMNLIFLQNMNQ

Query:  LTLIFSTSRNADALQFGLELSPSQQEVDGGAVDFANFFSIYSKDLRRYIL-INYFPRDPACVTNVTVTNSQVKISMENEELVILSKKDGECDIVGYE-EV
        + L F T  +   L+    L P Q++     ++++   ++ S+DLR+ I  +  F  D  C   VTVT+S+V+ S+ + EL I  K+ G C+I+G++ + 
Subjt:  LTLIFSTSRNADALQFGLELSPSQQEVDGGAVDFANFFSIYSKDLRRYIL-INYFPRDPACVTNVTVTNSQVKISMENEELVILSKKDGECDIVGYE-EV

Query:  ETQFQIKLHILPIFLKMASEDEKIWFYRTM-NSHCGMFIPTFESLAHYDVIYFPR
         T+F+I L+ +  FL +  + + +WF++T+ N+H  M  P FE  A Y VIYFPR
Subjt:  ETQFQIKLHILPIFLKMASEDEKIWFYRTM-NSHCGMFIPTFESLAHYDVIYFPR

A0A6J1KZ05 uncharacterized protein LOC1114988873.2e-3541.67Show/hide
Query:  MFLIRLDNFDPFMEAIIQMHQISKYADLKVSPLSFSTSVSHPTHGFAVKLHISPKFFANYSVDKHHRWRISLVSFQDAMFIARKRCLASMNLIFLQNMNQ
        MFL+RL +FDP  EA   + QIS  ADLK S   FS   S+P+  F     IS +FFANYSVD++H  R+SL SF DAM+       +SM + F +  ++
Subjt:  MFLIRLDNFDPFMEAIIQMHQISKYADLKVSPLSFSTSVSHPTHGFAVKLHISPKFFANYSVDKHHRWRISLVSFQDAMFIARKRCLASMNLIFLQNMNQ

Query:  LTLIFSTSRNAD-ALQFGLELSPSQQEVDGGAVDFANFFSIYSKDLRRYILINYFPRDPACVTNVTVTNSQVKISMENEELVILSKKDGECDIVGYE-EV
        + L F +S +    +   L+LSPSQ+E + G +    FFSI S+D R   +I   P  P     V++T+S+VK    +EE  IL+K+ G C I+GYE E 
Subjt:  LTLIFSTSRNAD-ALQFGLELSPSQQEVDGGAVDFANFFSIYSKDLRRYILINYFPRDPACVTNVTVTNSQVKISMENEELVILSKKDGECDIVGYE-EV

Query:  ETQFQIKLHILPIFLKMASEDEKIWFYRTMNSHCGMFIPTFESLAHYDVIYF
        E  FQI L+    F  ++    +IWFY+T++S C +F+P F   A Y VIYF
Subjt:  ETQFQIKLHILPIFLKMASEDEKIWFYRTMNSHCGMFIPTFESLAHYDVIYF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCTTGATTAGGCTTGACAACTTTGATCCTTTCATGGAAGCAATCATCCAAATGCATCAAATTTCTAAGTACGCCGACCTGAAAGTCTCGCCATTGTCATTCTCCAC
GAGTGTGTCGCACCCTACCCATGGCTTCGCTGTTAAACTGCACATTTCCCCCAAATTCTTCGCTAACTATTCCGTCGATAAGCATCACCGTTGGAGGATTTCCCTCGTAT
CCTTCCAAGATGCCATGTTCATTGCTCGAAAGCGATGTTTGGCTTCAATGAACCTCATTTTTCTCCAAAATATGAACCAATTGACCCTTATATTCTCCACTTCAAGAAAT
GCGGACGCATTGCAATTTGGATTGGAATTGTCACCTTCCCAACAAGAGGTGGATGGAGGAGCAGTTGATTTTGCAAATTTCTTCTCAATTTATTCAAAAGATTTAAGACG
ATATATACTAATAAACTACTTCCCTCGTGATCCAGCTTGTGTTACTAATGTTACTGTGACGAATTCTCAAGTCAAAATCTCTATGGAAAACGAGGAACTTGTTATTTTGA
GCAAGAAGGATGGAGAATGTGATATTGTAGGTTATGAAGAAGTTGAAACTCAATTCCAAATCAAGCTCCATATCTTGCCCATTTTCCTTAAGATGGCATCTGAGGACGAG
AAGATATGGTTTTATAGGACTATGAATTCTCATTGTGGAATGTTTATCCCTACTTTTGAATCTCTTGCTCATTATGATGTCATATATTTTCCTCGAAGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTCTTGATTAGGCTTGACAACTTTGATCCTTTCATGGAAGCAATCATCCAAATGCATCAAATTTCTAAGTACGCCGACCTGAAAGTCTCGCCATTGTCATTCTCCAC
GAGTGTGTCGCACCCTACCCATGGCTTCGCTGTTAAACTGCACATTTCCCCCAAATTCTTCGCTAACTATTCCGTCGATAAGCATCACCGTTGGAGGATTTCCCTCGTAT
CCTTCCAAGATGCCATGTTCATTGCTCGAAAGCGATGTTTGGCTTCAATGAACCTCATTTTTCTCCAAAATATGAACCAATTGACCCTTATATTCTCCACTTCAAGAAAT
GCGGACGCATTGCAATTTGGATTGGAATTGTCACCTTCCCAACAAGAGGTGGATGGAGGAGCAGTTGATTTTGCAAATTTCTTCTCAATTTATTCAAAAGATTTAAGACG
ATATATACTAATAAACTACTTCCCTCGTGATCCAGCTTGTGTTACTAATGTTACTGTGACGAATTCTCAAGTCAAAATCTCTATGGAAAACGAGGAACTTGTTATTTTGA
GCAAGAAGGATGGAGAATGTGATATTGTAGGTTATGAAGAAGTTGAAACTCAATTCCAAATCAAGCTCCATATCTTGCCCATTTTCCTTAAGATGGCATCTGAGGACGAG
AAGATATGGTTTTATAGGACTATGAATTCTCATTGTGGAATGTTTATCCCTACTTTTGAATCTCTTGCTCATTATGATGTCATATATTTTCCTCGAAGCTAA
Protein sequenceShow/hide protein sequence
MFLIRLDNFDPFMEAIIQMHQISKYADLKVSPLSFSTSVSHPTHGFAVKLHISPKFFANYSVDKHHRWRISLVSFQDAMFIARKRCLASMNLIFLQNMNQLTLIFSTSRN
ADALQFGLELSPSQQEVDGGAVDFANFFSIYSKDLRRYILINYFPRDPACVTNVTVTNSQVKISMENEELVILSKKDGECDIVGYEEVETQFQIKLHILPIFLKMASEDE
KIWFYRTMNSHCGMFIPTFESLAHYDVIYFPRS